LOC113526868 (rgs9bp,si:ch73-167i17.6,LOC107736378,LOC107601053,LOC107561069,LOC107705791,LOC107662858)


Basic Information

Item Value
gene id LOC113526868
gene name rgs9bp,si:ch73-167i17.6,LOC107736378,LOC107601053,LOC107561069,LOC107705791,LOC107662858
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27889761 ~ 27891260 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914289.2
GATGCGCGTCCACGTGAGCTTCTAGCGGTATTTAATGGGCAGCGGCTCTGAAGTGAACATctttctgctgaaaaaaaaaaaacactaaataaccCAGAACACTAAGGagaaaagacaataaataaGCATTTGAACGATTTTCGGACCCAAGAGTAAGCGCAAGGGCGGTTTATTGCGCATACGCGGATGGTCTCCTGTAGATTTTTGTCCATCAGAAGGATTTTATTAGCATGTAAGATGTTTTTGTGAGCAGATGAGGACACGTTGcgtgttttttttaaggattatGAGCCAGGGATTGTGTAGGATATATTCATGACGGTGAAAAACATTGAACTTTGTCGTGTTGGGCATTAAGGTGTAACGCGTAAACGCCGCGGCGCAccgtagtgtagtgtagtgtgtagtgtagtgtgtagtgtagtgtgtagtttagtgtgtagtgtagtagtttagtgtgtagtgtagtgtaggcCACTGACGCCGACTTTAATCTCCGAGGGCAAAAGTAAAGCTGTTTGCAGATCCGGTTACTGCTAAGCCTGTGCGCTGTCTCGTCGGGAGCATGCGGGGAAACATGGCTGGAGAGGAGCTGAGCGAGACCAGAGCGCTGAGTGGATCTGCGTGGCTGTGGCGCTGCCGTGGAAACTGAGGACGAGCGAGGCGCAGGTTTCCACCCGACACATCCCTCCAGGAgaacttttcatccatttttctCCACAAATATGGGCAAAGACGAGTGCAAAACCATGCTGGACGCTTTAAACAAGGTGACCGCCTGCTACAGGCACCTGGTGTCCGCTTTAGGGAGCACGTCGGACTCGCAGAACCTGCGGGAAGAGCTGAAGAAGACGCGGCGGAAAGCGCAGGAGCTGGCGGCGGCCAACCGGACCAGACTGACCGCGCTGCTCAAAGACAAGAGCATCAGCAACGACGACCGCGCCGAGTACGAGCGCCTGTGGGTGCTCTTCACCAGCAGCATGGAGATCCTGGAGGTGGACATGAGGAGGTCGCTGGAGATCGGGCAGGATTTCCCGCTCAAGGTGCCCACGCGCCACTTCATCCAGACCGGCATGACCGGGAGCACGAGCACGGTGGCGGCTCGGGCCATGAGCATGCAGAACATGAAATACGAATCGGACGCGGGCATCGACACGGCCGATCTGAAAGACCTGGAGGCCGAGATCGCTCAGCTCGACCAGAtgatggaggagatggagatgaAGGTGCAGGTGGCGCCGTGGGCGGTGGAGGCCAAGCAGGAAGCGGGAGCTGAACTCAAATCCACAGTCAGCGTGGGAAACTCATCCGTCGGTGTCATCTCCATCTGCGAAGAGGAACCCAAAGATGGGGGCGAAGGTGAAGCTGGTGTCATGAGGATCTTCGCGGGCATCATTTTCACTGTGGTTTTACTCATTGCAGGAATTCTGGGATATCTGGTCGTCAATCTTTGAAGTAGGATCTTATTAGAGTTGTGtgcacactaaaaaaaaaaaaaaa

Function

symbol description
rgs9bp Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Human ortholog(s) of this gene implicated in bradyopsia. Orthologous to human RGS9BP (regulator of G protein signaling 9 binding protein).
si:ch73-167i17.6 Predicted to be involved in G protein-coupled receptor signaling pathway and detection of light stimulus involved in visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Human ortholog(s) of this gene implicated in bradyopsia. Orthologous to human RGS9BP (regulator of G protein signaling 9 binding protein).

NR:

description
PREDICTED: regulator of G-protein signaling 9-binding protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914289.2 True 1500 mRNA 0.52 1 27889761 27891260

Neighbor

gene id symbol gene type direction distance location
nip7 nip7 coding upstream 26343 27860028 ~ 27863418 (+)
nob1 nob1 coding upstream 34996 27846818 ~ 27854765 (+)
gcsha gcsh,LOC108421035 coding upstream 176191 27710176 ~ 27713570 (+)
iqsec3b iqsec3b,iqsec3,LOC108263995,LOC108413205,LOC107735425 coding upstream 289192 27558440 ~ 27600569 (+)
pdpr pdpr coding downstream 11511 27902771 ~ 27918148 (+)
LOC113526465 LOC108263904,LOC103040524,LOC108435460 coding downstream 99304 27990564 ~ 28063149 (+)
pdcd5 pdcd5,LOC106587385,LOC107550119,LOC107690755,LOC107571235 coding downstream 180424 28071684 ~ 28078887 (+)
mvda mvd,LOC106562275 coding downstream 189737 28080997 ~ 28088425 (+)
LOC113526918 LOC108264585,LOC107550118,LOC107661987,LOC107698019,LOC107715044,LOC107571231 coding downstream 198118 28089378 ~ 28095826 (+)
G106118 NA non-coding upstream 160600 27726402 ~ 27729161 (+)
G106064 NA non-coding upstream 287027 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 391131 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 655537 27229784 ~ 27234224 (+)
G105855 NA non-coding upstream 744730 27141845 ~ 27145031 (+)
G106343 NA non-coding downstream 206469 28097729 ~ 28098001 (+)
LOC117597547 NA non-coding downstream 342547 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 498938 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 538743 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 678210 28569470 ~ 28571760 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 344235 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 675191 27211389 ~ 27214570 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 1056334 26830978 ~ 26833427 (+)
G104781 NA other upstream 2574548 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 2649548 25233625 ~ 25240213 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 53530 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 175622 28066882 ~ 28070685 (+)
def8 def8 other downstream 255003 28146263 ~ 28161869 (+)
cmc2 cmc2,LOC107711752 other downstream 908204 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2503000 30394260 ~ 30498315 (+)

Expression


Co-expression Network