si:ch211-151h10.2 (LOC108264443)


Basic Information

Item Value
gene id si:ch211-151h10.2
gene name LOC108264443
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19835533 ~ 19845837 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914298.2
AGTATGAGAGCATGTGGTGTTATGCAGATTGTacttaatattaatgtttttatctgtattatgtaagaaaaatgataaaaactcTTTAGTAATTTTAATACTCAATTGATGCTAGAGATGAGAGTTGTTAAAGTTTACTTCACGGTGATTGCCACGTAAGGCTGAGTGACTATTAAGTACATTTGGGCTCTGTGTCACACCACATTCCACACATTCTTCTGTAGATTGAACAAAGCTTCAAAACAAAAGCAACTAGAAGACGTAGCTGCTAAGCTGGTGTTACAGGACAGACAAGTCTTTTGCCTCGGCTTAACTGATGGAGAACAGATGCACAGACATACGGTTTGCCAATCAATATGTTAACACCAATGCCTCAGCTGACGACGGTGGATGTGAGGGACCTGAATGAGTACAGAAAGggggaaagagaaggaaagaggagaGGGGAAGATGATAGTGAGATGGAGGATGGTGTGGTTCATGAGCAGAAATGGTGCTGGAAGAATCTGAGGTGGGGGCACTGTCCCAGATGGATTCGGTGTCTGGCTCCAGTAGCAGCATTGTGGTTGGTGAGTCAGGAAGAGATGCACCTTCTCAAGGTTGGAGGCTGGCTGCTGCTGGCTTGGATGCTGTGGGCAGGCCTTATCCTCTGTGTTTCTCTACTCAAGTTCCTTTACCAATACAGAAGGCAATATAAGCAGaagaaGGTCTCAGAGAAGTGTGAGATTGTTGGGAAAAGGACTGGCCAACTTCATCAGGCGTGTCTCATCAGTCAGCAAGATGCAGGTCATCTGCTATCTATAGTGAGGGCTCTCCTGGATGGCTTAGTGGTCACCCTTCTCCAGGAACCAGTCTCAGATCCAAGGGTTTCCCAGATACAAGGTCTCCTCACCAAGCTGGAGGTATTGTCTGAATCAATAATAGTGCCATTAAACAATAGTTTCCTTACTGAGGAGCGACTGCTGCAGGCTGATAAGGACGACAAAGTGATCAAGACTAGAGTAGAAGACAGAGTGAAACATATTTGTACTTACCTGCAAGAGAGGGTGAGTACCCTGCACTTTCTTCTTCAGACCCAGGATCAGTATGGGGTATGCATAGCTAATGTTCAGCAGGAGTTGCAGGAATACTGGGAGCAGCTAGAGGATCTGCACACCAAAGTGACCCTGCAGCCAGAAAAGTGTCAGGGCCCTGAGGATCCTCACACTGTCCTCACTGACACTGAGGGCCTATACACAAAGCTGGGTTTGTTTCAGAGTAGGATTAATGAGTGTCAGTTGCACCTGAGCAAAAGTGCACAGCTTCTTGAGGAGCTGGAAAATAGGCAGCAGGATTTGGCTCAGACTATGGGCCGAACGCTGGAGTCTACTTGGACCAAAGACCTCCTGCAGTGTAACACTCACCAGTTTAAAAAAGTCTTCAAGGATTTCACATCCCTGGCGCAACAGACCCTGACCTTTGTGATGCATCTGCAAGACCTAAGTGTATCACAAGAGAAGAATAGCATTGAAACTTCTGATGTTGAACATGTGCAGAGCTCTTTATCACCTCTCTCATCACTTCCTGTGTACAGTATTGCTCTGGCCACAGAAAATACCCCCTTGGAACCTGCCCCAAGACCCCCCCACACACCCAGCTCCAAATTCTCAGTGATAAACTTGCTTTGTGGGGTGAGACGACGGAGATGAACTTTGTATCATTTAACACtttgtaaatgaatgaaagacaTGATTgtaaaatgaatatgaaaatgtataaatacttaatttatgaatta

Function

NR:

description
PREDICTED: uncharacterized protein LOC108264443 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914298.2 True 1777 mRNA 0.45 9 19835533 19845837

Neighbor

gene id symbol gene type direction distance location
prdm10 prdm10 coding upstream 104 19801828 ~ 19835429 (+)
LOC113526906 LOC108264037 coding upstream 47641 19782594 ~ 19787892 (+)
aplp2 aplp2 coding upstream 62091 19682060 ~ 19773442 (+)
st14a st14 coding upstream 174542 19635451 ~ 19660991 (+)
napab napa,LOC108264617,LOC108413256,LOC107668964 coding upstream 225735 19589527 ~ 19609798 (+)
treh treh coding downstream 251858 20097695 ~ 20115417 (+)
ttc36 ttc36 coding downstream 512376 20358213 ~ 20360195 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 727444 20573281 ~ 20630604 (+)
dner dner coding downstream 789191 20635028 ~ 20657916 (+)
sphkap sphkap coding downstream 927767 20773604 ~ 20819328 (+)
G101990 NA non-coding upstream 127960 19706351 ~ 19707573 (+)
G101919 NA non-coding upstream 250098 19585185 ~ 19585435 (+)
G101904 NA non-coding upstream 348251 19486401 ~ 19487282 (+)
LOC117597585 NA non-coding upstream 448596 19362733 ~ 19386937 (+)
LOC117597536 NA non-coding upstream 495734 19335998 ~ 19339799 (+)
G102050 NA non-coding downstream 8680 19854517 ~ 19854743 (+)
LOC113527003 NA non-coding downstream 47318 19893155 ~ 19897283 (+)
G102091 NA non-coding downstream 78425 19924262 ~ 19928951 (+)
G102093 NA non-coding downstream 90326 19936163 ~ 19936424 (+)
G102089 NA non-coding downstream 125856 19971693 ~ 19972119 (+)
G101602 NA other upstream 711656 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 713036 18957428 ~ 19122497 (+)
G101466 NA other upstream 1041260 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 1095535 18738343 ~ 18739998 (+)
G101419 NA other upstream 1236158 18598714 ~ 18599375 (+)
cdon cdon other downstream 74212 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 158519 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 231128 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 792923 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 998837 20844674 ~ 20849338 (+)

Expression


Co-expression Network