rps3 (rps3,LOC102795110)


Basic Information

Item Value
gene id rps3
gene name rps3,LOC102795110
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23270093 ~ 23274655 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914322.2
AAAACTACAACTCCCACCAGCGCTAGAGGTCAAGCGGAAGTGCAATGTCACCATAAATTGATTTCCGCTTTGGTCAACATTCCTTTCCTGTCTGCGGCCTTCGGCAAGATGGCGGTGCAAATTTCTAAGAAGAGAAAGTTTGTCTCAGACGGTATCTTCAAAGCCGAGCTGAATGAGTTCCTGACCCGAGAGCTTGCCGAGGATGGGTACTCCGGTGTGGAGGTCCGGGTCACTCCAACAAGGACAGAGATCATCATTCTTGCCACCAGGACCCAGAATGTCCTGGGAGAGAAAGGCCGTCGCATTAGGGAACTGACGGCTGTTGTTCAGAAGAGGTTTGGGTTCCCAGAGGGCAGCGTGGAGctcTATGCTGAGAAGGTGGCCACCAGGGGTTTGTGTGCCATCGCTCAGGCTGAATCTCTGCGCTACAAGCTGCTCGGAGGTCTGGCTGTCCGCAGGGCCTGCTATGGTGTTCTCCGCTTCATCATGGAGAGTGGCGCCAAGGGCTGCGAGGTGGTCGTGTCCGGCAAGCTCAGGGGTCAGAGGGCCAAGTCCATGAAGTTCGTGGACGGTCTGATGATCCACAGCGGAGACCCCGTCAACTATTACGTGGACACCGCTGTCCGCCACGTCCTGCTCCGCCAAGGTGTGCTCGGTATCAAGGTTAAGATCATGCTTCCCTGGGACCCCAGCGGCAAGATCGGCCCCAAGAAGCCTCTGCCTGACCACGTCAGCATCGTGGAGCCCAAAGAGGAGATCCTCCCCACCACCCCTGTGTCTGAACAGAAGGGGGCCAAGCCTGAAGTCCCAGTCATGCCCCAGGGAGCTCCTGTACCCACAGCATAAAGGGTGTTCACCATTGGATGATGAGGTTttctgtacaaaaataaaaggataaatacattta

Function

symbol description
rps3 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and erythrocyte differentiation. Predicted to be located in mitochondrial inner membrane; ribosome; and spindle. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleus. Orthologous to human RPS3 (ribosomal protein S3).

NR:

description
40S ribosomal protein S3

GO:

id name namespace
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02985 RP-S3e, RPS3; small subunit ribosomal protein S3e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914322.2 True 907 mRNA 0.55 7 23270093 23274655

Neighbor

gene id symbol gene type direction distance location
LOC113526446 LOC108264850 coding upstream 2273 23260622 ~ 23267820 (+)
trnak-cuu_22 NA coding upstream 106914 23163107 ~ 23163179 (+)
LOC113526468 arhgef17,si:ch211-248g20.5,LOC107660677,LOC107658857 coding upstream 170202 22985409 ~ 23099891 (+)
fam168a fam168a,LOC108264593,LOC107594362,LOC107600264 coding upstream 336068 22883271 ~ 22934025 (+)
LOC113526346 wdr49,LOC108264614 coding upstream 1536522 21689428 ~ 21733571 (+)
kctd14 kctd14 coding downstream 1060 23275715 ~ 23280561 (+)
ints4 ints4 coding downstream 6764 23281419 ~ 23297448 (+)
rsf1a rsf1 coding downstream 24901 23299556 ~ 23316798 (+)
clns1a clns1a coding downstream 46972 23321627 ~ 23328390 (+)
pak1 pak1,LOC100698864 coding downstream 72175 23346830 ~ 23414735 (+)
G103376 NA non-coding upstream 82430 23187152 ~ 23187663 (+)
G103327 NA non-coding upstream 163852 23106142 ~ 23106241 (+)
G103331 NA non-coding upstream 263453 23000367 ~ 23006640 (+)
G103301 NA non-coding upstream 370656 22899063 ~ 22899437 (+)
G103297 NA non-coding upstream 400810 22866740 ~ 22869283 (+)
G103606 NA non-coding downstream 140840 23415495 ~ 23416103 (+)
G103688 NA non-coding downstream 271462 23546117 ~ 23546390 (+)
G103828 rnpepl1 non-coding downstream 424197 23698852 ~ 23702964 (+)
G103832 NA non-coding downstream 428933 23703588 ~ 23705228 (+)
G103889 NA non-coding downstream 455223 23729878 ~ 23738753 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 10836 23163646 ~ 23259257 (+)
relt relt other upstream 121221 23113084 ~ 23148872 (+)
LOC113526422 p2ry6 other upstream 286494 22942709 ~ 22983599 (+)
zbbx zbbx other upstream 1456883 21762447 ~ 21813210 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other upstream 2167877 21026027 ~ 21102216 (+)
serp1 NA other downstream 297896 23572551 ~ 23575713 (+)
G103830 NA other downstream 340448 23615103 ~ 23629723 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other downstream 464847 23739502 ~ 23763045 (+)
LOC113526839 NA other downstream 1958970 25233625 ~ 25240213 (+)
G104781 NA other downstream 2020244 25294899 ~ 25315213 (+)

Expression


Co-expression Network