pex16 (pex16,LOC107758067)


Basic Information

Item Value
gene id pex16
gene name pex16,LOC107758067
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24323720 ~ 24335065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914329.2
GCTGTTGCCGGAAGCGCATTGCTTTGCGGAAGTATCATTCACATTCTGTTGCGTGGTCTAATTAATGGGTTTTCCTGTGATGTTGCGCTAATTAGGCTGCACAGATGTCTGGAGTGTATTTAGAGAAGATTGCACGTGTGTATGAGCGCTACCGGGATTATGTGACCCGGAACCCGGGCGTTACGGCGCAGCTGGAGAGCGCAGTGCGGACTCTGTCTTATCTCATAGCAGGCCGCTTTTCAGACTCTCATGAACTTTCCGAGTTGGtgtatTCAGCATCAAACCTGCTGGTGTTGCTGAATGATGACATTCTAAGGAAGGCTCTCTCCAAGACTCTGCCTGTGTCTCTCTCCCAGCAGAGGCTGCTAACTTGGCTTTCAGTCCTGGAGTATGTGGAGGTCTTCACTGAGATGGCAGCCGCTAAGCTGTGGAAAGAACCCGGGCGCTGGCTGGTCGTCGTCCTCATTCAGATTGCAAAAGCCATCCTGCGCATCCTGCTGCTCTTCTGGTACAAATCAGGCATCCAGACATCACCTCCCATAATCCCTTTGGATAgagacacacagctgtacaaCAGAGATCAGAGCAGCGTGGAGGAAGATGTCACATTCGTTGGACAGCGCTCAGGGAGAGTGGTGAGACCTTTGAGAAGTGTGTCTTCACTGCAGAGTCGACTGTGGGGAGATCCTCACAGAGAGAGGAAGCGGAGGGAGCAGGAGGAGGACCTACAGGCAAGCCCCACCCCTCTGGGCCTGCAGGAGACTATTGCAGAATCACTGTACATCGCTCGACCCTTAGTGCACTTGACCGCTCTAGGACTCTGTGGCAGACGCTCCTGGAAGCCATGGCTCATCTCTGGCATCTTGGAGATAACAAGTTTCAGTTTGTTGTCTGACACAATGAAGACACTGAACCGCAGAGAGAGGGCCGAGATGAGGAGAAGAGCTTTCCTCCTGCTCTACTACCTACTCCGCTCACCTTTCTATGACAGATACTCTGAAGCAAAGATCCTCTTCCTTCTCCGGTTCTTGGCCGATTACATTCCTGGAGTAGGCTTAGTTGCACGCCCACTGATGGAATACTTACCCATTTGGCAGAAGATCTACTTTTATAACTGGGGCTGAGGCTGAACAGGCGGAAAAGGTCATACAAACCTGTATATATAAAGGACTCAGAAAGTGCTTACGTCTGCTGCAAAACCACATGGGGACAGACggacgcacgcacacgcacaagcacacacacacacgaacatcCTGTGACAATCTGAGTTGAAGATGAGTTGTACAACACattatttcagtttgtttagCTAGCATGATTGAGTTTCATAAAATGGACAGTTTAATCCAGTTCAGAAAATCATTGTTGTCTTTATCttgtttctttttgctttcagttttcatgattttttttttttgttattattttgtataatataATTCATCAAATCTCTCAGTGCCACATTTTACACCATTCTTTGTTCATGTAATGTTTTCTTATGAGAACACAAATCTATTCTGttcagttagatttttttttttttttttaaagagataatGGTTTCACGCAACAGGACAGTGATTCAACCTGACTTGCTGAGCTTGAGTCATTATTGCTGTTGAGATATTTTTTTCAACTGAGGTATTACATTGAGTTGagtagaaatgataaaaagcTATAAGGCCTTTTCAGAGGACATCCTGTCTTTCTGGACCCCCTTTACTTCAAACCAGCATTATAAGCAGTAAACTGATGAATGTCCTCTGTTTTTCACTGTGAACTAACTAAAAGCTCATTTTGGTAATTGAGTAAACCTGACTTTTGTGCAATGGCTGGAAATGCTCtatgtgattataaatattcatgattttattaaaggcatctgaaaaaaaaagaagactagAAATCCAATGTGAGAAATGGATGATGGATTTTGTACACacctttatgcatttaataaatCAGCCAGTGATGGGAAAAGCAA

Function

symbol description
pex16 Predicted to be involved in peroxisome organization. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 8A. Orthologous to human PEX16 (peroxisomal biogenesis factor 16).

NR:

description
PREDICTED: peroxisomal biogenesis factor 16

GO:

id name namespace
GO:0007031 peroxisome organization biological_process
GO:0005778 peroxisomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13335 PEX16; peroxin-16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914329.2 True 1987 mRNA 0.44 11 24323720 24335065

Neighbor

gene id symbol gene type direction distance location
wt1b wt1,LOC108264570 coding upstream 447675 23856438 ~ 23876045 (+)
pcyt1ab LOC108264716,LOC108440592,LOC107717621,LOC107670596,LOC107758059,LOC107575479 coding upstream 731939 23582140 ~ 23591781 (+)
LOC113526461 NA coding upstream 777849 23541234 ~ 23545871 (+)
ompa omp,LOC107735103 coding upstream 801464 23521335 ~ 23522256 (+)
gdpd4a gdpd4a,LOC108264809,LOC108431176,LOC107660699 coding upstream 871160 23429156 ~ 23452560 (+)
si:ch211-71n6.4 LOC108264393 coding downstream 4570 24339635 ~ 24349296 (+)
cep126 NA coding downstream 33014 24368079 ~ 24384446 (+)
yap1 yap1,LOC107746561,LOC107662128,LOC107758259,LOC107687356 coding downstream 57233 24392298 ~ 24427128 (+)
six5 LOC108264811 coding downstream 113276 24448341 ~ 24461703 (+)
six9 six9,LOC108263903,LOC108433455,LOC107554476,LOC107736748,LOC107687364,LOC107758232 coding downstream 127761 24462826 ~ 24467476 (+)
G103896 NA non-coding upstream 569460 23749063 ~ 23754260 (+)
G103889 NA non-coding upstream 584967 23729878 ~ 23738753 (+)
G103832 NA non-coding upstream 618492 23703588 ~ 23705228 (+)
G103828 rnpepl1 non-coding upstream 620756 23698852 ~ 23702964 (+)
G103688 NA non-coding upstream 777330 23546117 ~ 23546390 (+)
G104257 NA non-coding downstream 145300 24480365 ~ 24484096 (+)
G104284 NA non-coding downstream 229567 24564632 ~ 24571887 (+)
G104325 NA non-coding downstream 240427 24575492 ~ 24634405 (+)
G104429 NA non-coding downstream 427577 24762642 ~ 24764112 (+)
G104509 NA non-coding downstream 491701 24826766 ~ 24827147 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 560675 23739502 ~ 23763045 (+)
G103830 NA other upstream 693997 23615103 ~ 23629723 (+)
serp1 NA other upstream 748007 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1064463 23163646 ~ 23259257 (+)
relt relt other upstream 1174848 23113084 ~ 23148872 (+)
LOC113526839 NA other downstream 898560 25233625 ~ 25240213 (+)
G104781 NA other downstream 959834 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 2495913 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 2876324 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 3191058 27526123 ~ 27545526 (+)

Expression


Co-expression Network