tcf25 (tcf25,LOC106562269)


Basic Information

Item Value
gene id tcf25
gene name tcf25,LOC106562269
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28098396 ~ 28114961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914374.2
GCAGGATAATGACGCAACTTCCGGTATGGACTGCAAGTGCTTCCGCATGAATGTCCAATCAGATCCGCTTGTCAGTCCTGACTTTTGTTGTGGTCGTGTTTGTGTTTGGCCCTGAGCTTCCCCGAAGCAGCTGTTTGTGAGCCGGTGTGTGAGAAAATGTCGAGCCGAGCgctgaggagactgaaggggAAACAGCGGGGACAAGAGGATATAAACATCCGAGACCTGAAACTGACTGATGGAGAAGGGAAAGGAGTGGAActagaggaggaagaggagcaggaggaggaagaggaggaggaggaagaggttTTACAGCCGGCTAAGAGCAGCAACCAGAAagcgaagaagaagaagaagagcaaaaatcagaaaaacatcaGCAACATTTATGAACTGATTGGCGAAGCTGCTGATACTGATGGCAACAAAACTCAGAGTGACGAGGAGAGCATCCCAGCACCAGGAAATCAAGAAAAGtcTGACTCTAACGAAAAGACAAgcaataagaaaaagaagaagaagaagagaaaaaaggcttCTGCTGCAGATCCACTGgaggAGCCAGTTAAAGGTGATGACATAGACGCGTTGCTGGAGACCATAGAGAAGCAGAACGGTTTGTCTGTTCAGAGTGAGGATGGTGGAGTTTCAGGAAACAGACCTGTGCTTTATGTGGAACACAGGAATCTTAACCCTGAGAATGAACTAAAGAGATATTTTGGAGCTCGGGCTGTGCTTGGAGACCAAAGACCCAGGCAAAGACAGAGGCAGTTTCATCGCAGCACGTGGATGACCTCCCCTAAAGACACATGGGCTCGCTTTAGTCGACCGGGTATCTCCATGAGTCTGCTGGAGTCAAAAGATGGCCTCCACTTCTTTGCTTTCGAGCACAGTCGCGATTACCAGCAAGTCCAGTTCAAGTTCTTCGATGCTGTGGAATCTATGGATCCTAATAACATTGTGGCCCTGCTACAGCTTAATCCCTACCACATCGACTCTCTGCTGCAACTCTCCGATGTGTGTCGCATTCAGGAGGACCAGGAGACGGCCAGAGACCTGATCGAGAGGGCTTTGTACAGCTTTGAGTGTGCATTCCACCCCGTGTTCAGCCTCACCTCAGGAACCAGCAGGTTGGACTACCGGAGAGCAGAGAACAGAGCTTTTTATCTGGCGGTTTATAAGCACATGATGTTCCTGGAGAAAAGAGGATGTCCACGCACGGCTCTGGAGTACTGCAAACTCATCCTGAGtcTGGACCCGGATAATGATCCTCTGTGCATGCTGCTGCTGATTGATTTTCTGTGTCTGCGCTGTCGAGAATACACCTTTCTCATCCGACTGTATGATGAGTGGGAGgTACATCGGAACCTGTCCCAGCTGCCTAACTTTGCCTTCTCATTAGCTCTGGCTTGCTACCACGTGAGTCAGCAAGAGGAGACGCCACCTGAGGAGAGCCAACGCATGAAGCTCAGATCTGACACACTGCTGCAGGATGCTCTCATCTTCTTTCCTGgagtgttgATGCCTTTGTTGGACCACTGCTCAGTCCAGCCCGATGCTGCCGTGTCCTCCCATGCATTCTTTGGTCCCAAGAGCCGTTTGGGGCAGCCCCCTGCTCTGTTGGAGCTCATGGGTCTGTACGTGGGCCGCTGTCACAGCCTGTGGAAGGAGGCAGGAGTGATGCTGTGGATGGAGGGAAACGTTCGGGAGGTGTTGAGGAGGGTCGATGTTAAGGACCCAGTGGTGGAGGACTGCCAGAACAAGAGGAAGCAGAGATACCAGAGCGCTCCCAGGAACATTCACAGACATGTACTTCTTTCTGAGATTAAGGAGGCTACATCTGCACTGCCTCtgGAAGTGACCACACAGCCAGTGATGAGTTATGATCCACTTCCTCCTCTAGATGCTGTCGTCTCCTACACCAGGCCAGAGAGGCAGAATCCGCGAGCCTCAAATGAGAGCACTTTGTCGCTGTTGTTCCGCTCTTTGTTGCCCAACTTCAACCTGCAGGGTGAACAGAGGCCTGAAGATGACCTGGAAGTGGCACGTGCAGGTCGGGAACTGAACCAGGAAGTGAACCGATTGATGGTGGCCATGAGGGACATGCTGGCTAACATCCAATTCCAGGATCCGCCGAGGGATGACAACCAAGACCGAGACGAAGAGGAGTGGGACTGAGACAGGGAATGAGagcagaaaaggagaaaatgatAACTAAAGACAATGGGACAAAGATTAGATGTGGTGGATTGATGTGGAGAACAAGAAATCTGTACATTCGCAATCAGTATATTTCTATCCTTTGTCTCCTTCCAAGATTAAACCTAAAGTTGTCGATTGACTCTTAATTATGCTGAATCCTCCAGACAGTACGTTTATATTTGAGATCGACGGATGCTTTTACCCAGAGTGACTTATAACTTCGATATAATGGTGTTAATCTCAGCATAATGCTATGCAACCGAGGGTTAAGGGTTTTCCTCAAAGACCCAACGCCGGTTTCTAGATTTGAACAATCTATCAAACACTAGCTCGGATATCAGATATCATTACTTTGCGCGATTCCTTCTGACCTCGTGATCTGAGTCATTCATCGGCCCATAAAATATCCTAGTCGTAAATAGGACTGTTGAATTAAGAAATTCTctcaattaatatttttattcattaaaagacTTTTGCCTGGG

Function

symbol description
tcf25 Predicted to be part of RQC complex. Is expressed in lens; mesoderm; notochord; and somite. Orthologous to human TCF25 (transcription factor 25).

NR:

description
transcription factor 25-like

GO: NA

KEGG:

id description
K24970 TCF25, RQC1; transcription factor 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914374.2 True 2690 mRNA 0.49 18 28098396 28114961

Neighbor

gene id symbol gene type direction distance location
LOC113526918 LOC108264585,LOC107550118,LOC107661987,LOC107698019,LOC107715044,LOC107571231 coding upstream 2570 28089378 ~ 28095826 (+)
mvda mvd,LOC106562275 coding upstream 9971 28080997 ~ 28088425 (+)
pdcd5 pdcd5,LOC106587385,LOC107550119,LOC107690755,LOC107571235 coding upstream 19509 28071684 ~ 28078887 (+)
LOC113526465 LOC108263904,LOC103040524,LOC108435460 coding upstream 35247 27990564 ~ 28063149 (+)
pdpr pdpr coding upstream 180248 27902771 ~ 27918148 (+)
mc1r tubb3,mc1r,LOC107662306,LOC107706122,LOC103037812 coding downstream 4063 28119024 ~ 28123920 (+)
LOC113526844 tubb3,tbb3,LOC108431516,LOC107552791 coding downstream 18881 28133842 ~ 28141732 (+)
LOC113526563 LOC108264624 coding downstream 48724 28163685 ~ 28181203 (+)
gas8 gas8,LOC108276428 coding downstream 91792 28206753 ~ 28215082 (+)
mthfsd mthfsd coding downstream 100826 28215787 ~ 28223504 (+)
G106343 NA non-coding upstream 395 28097729 ~ 28098001 (+)
G106118 NA non-coding upstream 369235 27726402 ~ 27729161 (+)
G106064 NA non-coding upstream 495662 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 599766 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 864172 27229784 ~ 27234224 (+)
LOC117597547 NA non-coding downstream 118846 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 275237 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 315042 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 454509 28569470 ~ 28571760 (+)
G106527 NA non-coding downstream 457718 28572679 ~ 28573466 (+)
uraha LOC108264586,LOC108417536 other upstream 27711 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 132088 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 552870 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 883826 27211389 ~ 27214570 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 1264969 26830978 ~ 26833427 (+)
def8 def8 other downstream 31302 28146263 ~ 28161869 (+)
cmc2 cmc2,LOC107711752 other downstream 684503 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2279299 30394260 ~ 30498315 (+)

Expression


Co-expression Network