lmo2 (lmo2,LOC107554475)


Basic Information

Item Value
gene id lmo2
gene name lmo2,LOC107554475
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19518603 ~ 19526473 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914425.2
AACGAAAGCAGAACAGCCCAGGTGGGTGGGGCTACTTAAAAATACCTGCAGTACAAAAACGCAGGACACAAGTTCCGCTTGTAGTTGGAGCATACGACAAGAAAATGCCGAGCATTACTCATGATGTTTGACTTTCAGCATTCATAAGCCTGCGATTTCATTACAATAGTTCGGAtgaaaacgtttttttttttctgacagcgTGATATACAGGACGTCTACAGCTGGTGGCGTTACTCTGTTTCATACCCTAGCGGAACCCATCTGTTTATCTTCGGGACGTTGAAACGTGTTACTTGGAAATGGGCGAATTTTACAGCACGCTGTCGACAAGCTGAATGATAGCGGGGCGCAagtgtatttttcctttttttacgCACATTTCGTgcttatttctgtgtgtgagtgtgtatgtttgcCAGAAGTATAAGTACAACGGACGAGTAAGCATTTCCTCTTTGAAGTGTCACCTCCAAATCCACAATAGTGTGTCCTGCTACAACTGGGAATCATAGCCCGACCTAACATGGCATCTACAATTGAGAGGAAGACCATGGAAGTTAACGAAGAACTAGTGGATGAGGTACTCCAGGTGCCTCCGTCAATGCTAATGTGTGGTGGTTGTCAGCAAAGCATTGGAGACCGTTTTTTCCTGAAGGCCATAGAGCAGTACTGGCATGAGGACTGCCTGAGCTGTGACCTTTGCGGCTGCCGCCTGGGTGAGGTCGGCCGAAGATTGTACTACAAGCTCGGTAGGAAGCTGTGTCGAAGAGACTACCTAAGacTGTTTGGTCAGGATGGGCTCTGCGCTTCCTGTGAGAAGAGGATCCGGGCTTTTGAAATGACTATGCGAGTTCGTGACAAAGTGTACCACCTTGAGTGTTTCAAATGTGCAGCCTGTCAGAAGCACTTCTGTGTTGGTGACCGCTACCTGCTTATCAACACAGACATTGTATGTGAGCAGGACATTTTTGAGTGGACCAAACTCAACAGCAACTTACGGTAATGTCGTTTAAAGACTCAAAAGCTGGTGTTGCCAAAATCTACAATTACTACTTTACACAACAGCTACATAACAGTTAAGAAGTGCAGTTCTATAGCATTGAgtttcatataatttttttatattttcagttcaCCAGCACATAACCAAGACTTCATTTACCTTGGGAAAGCTGaagattttttaatgtatgtggGCAATAATAGCTATTTCACagaccccctttttttttttttagatagtcATACACACTGTTAGACAATAGAAATGTTGCTTGTTACAGAGTCACACTTGctacaaatactgtatgtggATACGTtttatagaataataataaaaaaaagccccctttttttttttattagtctaATACCTAGGTCCCATCCTTACCATGTTTCAAAATCAGTAGGTCATATAGCTCTAAACAGGATGCCAGTGGCCtttgattgattttatttaaaatctgaatGCACCGAAAAGTTTTGGTGCCTGTCTAGACATACTTCTAACAGACCCTTTAGGTGCCTTTTGGACAGTTCTAATGCACAATCTAAGACTCTTGAAAATGCACTCTTAACTTTTCATAGTCACCAGCATAGTCAATTCATATCGGCTGAACAGCTGACTCATGCTGCTCCACATTACGCATCTTGTATCAAATAAgtatcaaatgttttttttcaccttgtAATGTTTTCCTTAAGTTTACATCTGCtgtaattttcatttaattgatGTAGATGTTAAGTGGTGTTTATCACAGATAAATCCCAGGACCCAGGACTTTGTATATTAAGTTATACAtaacagaaaatagaaatagaTGGGATGTGTTTAAATCTGTACGGAATATTCTAGGATTTCATTTTTCTCTGGTGGAATTTGTTTTAGTGAGAACTTGTAATTTGGCACACAAttacttcattttatttgatttaattagaGGTCCTTTTTTCAGCATGGGTCATTTGAATAATCATTAATCcatgtaaaacatttatttgtacatGCTTTAGCcctgtctgcttttttttttttattttactttcattaaATCTTATATATTTGTCGCAAAGACCTGTTCAGTaatttgagtttattttatttccctttAATCCATTGTAACAAATTGTAGAATAATAACAAATTGTAGAATAAAAGATGTATAAGGAAATGGGCTCACCTGATAAGCATGCTACAGTGAGTATTGAGTATGCTACTTTTCTAAGTACTAGGTTTAACAGTTctgcaaatatatttttttttgtcagtctttaaattaaaaattctaTTGGATTTTCCACATTAAATTGA
>XM_034305515.1
gaaatgaatactaaatgaaaaaagatcTTTTAACAAACTAATAACAATcatgatcatccaggtaacaacacacattATTAAGAATCAGGTGTATGTAAAGTATGGTTTAGTATGGTTCATTtctgtaaattcagttataattTTGTCCGCATCACAATGCCCCTGTAGAAAGCAAGGTCAtttaagacatggtttgccaaagctgatgtggaagaacttgagtggcctgcacagtgAGACAGAATAAGTGaagaaattgtttaaaaaaaaaaaaaatcaatgtatCCATGATGTACAGCTTTCCATAAGAGCTCCACAACTCCTTCCAATAACCTGCATTATATACCGAACAAACCGACACTGAACAGACGAACAGAAGCACACAGCAGGATGTGAACCCTGACATGTGTATCTTATACACAATTAACTAGCCAATAGTCTTAAAAACTCAGGCTGTTAGACTGTCAAATTCCTCAGTATGAACCAGTGATTACAGGCTAAAATTATATACTAATGAGTCTGAAACAATATACATCtataggcttgtgtgatattgaatttttaaaaatattgcgATAAACAATTTAATCGTCCAAAATGGATAACCCAAAAAAGACAGGAAACTAGCATGTCCataatttcaggtttaaggagagcAGCGGAGGCataatattaccagctgtgAAGTCAGGAACAGTGGTAAGCTGGATTCTGCAGAAATGTGagAGAACTAGTGGATGAGGTACTCCAGGTGCCTCCGTCAATGCTAATGTGTGGTGGTTGTCAGCAAAGCATTGGAGACCGTTTTTTCCTGAAGGCCATAGAGCAGTACTGGCATGAGGACTGCCTGAGCTGTGACCTTTGCGGCTGCCGCCTGGGTGAGGTCGGCCGAAGATTGTACTACAAGCTCGGTAGGAAGCTGTGTCGAAGAGACTACCTAAGacTGTTTGGTCAGGATGGGCTCTGCGCTTCCTGTGAGAAGAGGATCCGGGCTTTTGAAATGACTATGCGAGTTCGTGACAAAGTGTACCACCTTGAGTGTTTCAAATGTGCAGCCTGTCAGAAGCACTTCTGTGTTGGTGACCGCTACCTGCTTATCAACACAGACATTGTATGTGAGCAGGACATTTTTGAGTGGACCAAACTCAACAGCAACTTACGGTAATGTCGTTTAAAGACTCAAAAGCTGGTGTTGCCAAAATCTACAATTACTACTTTACACAACAGCTACATAACAGTTAAGAAGTGCAGTTCTATAGCATTGAgtttcatataatttttttatattttcagttcaCCAGCACATAACCAAGACTTCATTTACCTTGGGAAAGCTGaagattttttaatgtatgtggGCAATAATAGCTATTTCACagaccccctttttttttttttagatagtcATACACACTGTTAGACAATAGAAATGTTGCTTGTTACAGAGTCACACTTGctacaaatactgtatgtggATACGTtttatagaataataataaaaaaaagccccctttttttttttattagtctaATACCTAGGTCCCATCCTTACCATGTTTCAAAATCAGTAGGTCATATAGCTCTAAACAGGATGCCAGTGGCCtttgattgattttatttaaaatctgaatGCACCGAAAAGTTTTGGTGCCTGTCTAGACATACTTCTAACAGACCCTTTAGGTGCCTTTTGGACAGTTCTAATGCACAATCTAAGACTCTTGAAAATGCACTCTTAACTTTTCATAGTCACCAGCATAGTCAATTCATATCGGCTGAACAGCTGACTCATGCTGCTCCACATTACGCATCTTGTATCAAATAAgtatcaaatgttttttttcaccttgtAATGTTTTCCTTAAGTTTACATCTGCtgtaattttcatttaattgatGTAGATGTTAAGTGGTGTTTATCACAGATAAATCCCAGGACCCAGGACTTTGTATATTAAGTTATACAtaacagaaaatagaaatagaTGGGATGTGTTTAAATCTGTACGGAATATTCTAGGATTTCATTTTTCTCTGGTGGAATTTGTTTTAGTGAGAACTTGTAATTTGGCACACAAttacttcattttatttgatttaattagaGGTCCTTTTTTCAGCATGGGTCATTTGAATAATCATTAATCcatgtaaaacatttatttgtacatGCTTTAGCcctgtctgcttttttttttttattttactttcattaaATCTTATATATTTGTCGCAAAGACCTGTTCAGTaatttgagtttattttatttccctttAATCCATTGTAACAAATTGTAGAATAATAACAAATTGTAGAATAAAAGATGTATAAGGAAATGGGCTCACCTGATAAGCATGCTACAGTGAGTATTGAGTATGCTACTTTTCTAAGTACTAGGTTTAACAGTTctgcaaatatatttttttttgtcagtctttaaattaaaaattctaTTGGATTTTCCACATTAAATTGA

Function

symbol description
lmo2 Predicted to enable metal ion binding activity. Predicted to contribute to DNA binding activity. Involved in hemopoiesis. Acts upstream of or within several processes, including fin regeneration; hemopoiesis; and retinal blood vessel morphogenesis. Predicted to be located in nucleus. Predicted to be part of protein-containing complex. Is expressed in several structures, including angioblastic mesenchymal cell; hematopoietic system; mesoderm; pronephros; and vasculature. Orthologous to human LMO2 (LIM domain only 2).

NR:

description
rhombotin-2

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process
GO:0061304 retinal blood vessel morphogenesis biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15612 LMO2; rhombotin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914425.2 False 2317 mRNA 0.38 3 19518603 19526473
XM_034305515.1 True 2476 mRNA 0.36 3 19520380 19526473

Neighbor

gene id symbol gene type direction distance location
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding upstream 158280 19354126 ~ 19360323 (+)
spred3 spred3,LOC108264009,LOC107554984 coding upstream 209802 19295492 ~ 19308801 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding upstream 234900 19279150 ~ 19283703 (+)
zgc:162879 NA coding upstream 278626 19159986 ~ 19239977 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 785789 18681517 ~ 18732814 (+)
bicra gltscr1,LOC108413251 coding downstream 31547 19558020 ~ 19572869 (+)
ehd2b ehd2,ehd2b,LOC101154661,LOC108413254,LOC103039027,LOC107565090,LOC107668886,LOC107670629 coding downstream 46830 19573303 ~ 19581510 (+)
napab napa,LOC108264617,LOC108413256,LOC107668964 coding downstream 63054 19589527 ~ 19609798 (+)
st14a st14 coding downstream 108978 19635451 ~ 19660991 (+)
aplp2 aplp2 coding downstream 155587 19682060 ~ 19773442 (+)
G101904 NA non-coding upstream 31321 19486401 ~ 19487282 (+)
LOC117597585 NA non-coding upstream 131666 19362733 ~ 19386937 (+)
LOC117597536 NA non-coding upstream 178804 19335998 ~ 19339799 (+)
G101855 NA non-coding upstream 182821 19335581 ~ 19335782 (+)
G101824 NA non-coding upstream 216642 19301254 ~ 19301961 (+)
G101919 NA non-coding downstream 58712 19585185 ~ 19585435 (+)
G101990 NA non-coding downstream 179878 19706351 ~ 19707573 (+)
G102050 NA non-coding downstream 328044 19854517 ~ 19854743 (+)
LOC113527003 NA non-coding downstream 366682 19893155 ~ 19897283 (+)
G102091 NA non-coding downstream 397789 19924262 ~ 19928951 (+)
G101602 NA other upstream 394726 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 396106 18957428 ~ 19122497 (+)
G101466 NA other upstream 724330 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 778605 18738343 ~ 18739998 (+)
G101419 NA other upstream 919228 18598714 ~ 18599375 (+)
cdon cdon other downstream 393576 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 477883 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 550492 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 1112287 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 1318201 20844674 ~ 20849338 (+)

Expression


Co-expression Network