taldo1 (taldo1,LOC107711369,LOC107599753)


Basic Information

Item Value
gene id taldo1
gene name taldo1,LOC107711369,LOC107599753
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30258068 ~ 30265561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914447.2
ctgtgctgttttgttttttttaaacccccgTGGCCGTGTCCTCGTGCTCGGAGCTGAAATTCTGTTGCGTCTCACGCGCGCACCTCGGTAACGGTATAAAAGGGTCCCCCTCGCAGCGCCATGTCCCAGTCGCCTGACAAACGCCGAAAGATGGAGTCTGCGCTCGAGCAGCTGAAGAAGCACACGGTAGTCGTTGCTGATACGGGAGATTTTAACGCGATCGAAGAGTACAAGCCTCAGGATGCCACCACGAACCCGTCGCTCATCCTGGCAGCGGCAAAGATGCCCACTTACCAGCACCTCGTGGACCAGGCGATTAAATATGGCATCGCTAACGGCGGGACCGAAGAGGAGCAGATCACGAACACGATGGACAAGCTGTTCGTCAGCTTCGGTGTGGAGATCCTGAAGAAGATCCCCGGTCGAGTCTCCACAGAGGTGGACGCCAGgTTATCGTTCGATAAAGACGAGATGGTGGCTCGCGCACGGCGGCTCATCTCTCTGTACGAGGAGGCCGGAGTGAGCAAGGACCGAGTGCTCATCAAGCTTTCTTCCACGTGGGAGGGCATCCAGGCCGGGCGGGAGCTGGAGGAGAAATATGGCATCCACTGCAACATGACCCTGCTGTTCTCCTTCGCGCAGGCGGTGGCTTGCGCCGAGGCAAAGGTCACGCTCATTTCACCTTTCGTCGGCCGCATACTGGACTGGTACAAAGAAAACACCGAGCGCAAAACCTACGAGCCGCACGAGGACCCCGGTGTGATAAGCGTCACGAAGATCTATAACTACTACAAGAAGTTTGATTACAGCACCGTGGTGATGGGCGCGTCCTTCAGGAACACCGGAGAGGTCAAGGCGTTGGCTGGATGTGATCTTCTCACCATTTCTCCAGGGCTGCTGGGAGAACTGAGCCAGGATCACGCCGCTGTGTCCTGCACTCTCGCTCCGGAGAAAGCGAAGGCTTGTGATCTGGAGAAGCTCCACCTGGATGAGAAGACCTTCCGCTGGCTGCACAACGAGGACCGCATGGCCGTGGAGAAGCTCTCAGACGGCATCCGGAAATTTGCAGCGGACGCGGTGAAGCTCGAGGGCATGATCAAGGAGAAGATGCTCGGTGTGAAAAACGGACAGTAACGCCGATTAAAACCCGAGAAACTCCTGATGAGCCTGTCGCTATTGGCTGAAACGCTGAACTTGCTTCCGAAGCTGAAACTCATTCCGTAGTCTTAAACCTCAGACCACTAAGAGCTCCTGCACTAATCATAAACTGTGTGTCTGTTCAGGGATAAAGTCCTCCAAGAATCAAACATTCctatttttactattattattattattattattattattattaaaaactggGATATTAATAGAAGAACCAAAAACAATAATGTGTGTTTAAGGGGAAAACACGGTACCCAAGGGACTAAAGACAACATGGTGTCCAcatctgttatgttttttattattatcagtttaTAACAAATCAACCAATCACCCTTCAGATCCACTCTTGCTTCACGGTTTCAATAAAGAAACGATATCGCGAAAA

Function

symbol description
taldo1 Predicted to enable transaldolase activity. Predicted to be involved in pentose-phosphate shunt, non-oxidative branch. Predicted to act upstream of or within carbohydrate metabolic process and pentose-phosphate shunt. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder. Orthologous to human TALDO1 (transaldolase 1).

NR:

description
PREDICTED: transaldolase

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0005737 cytoplasm cellular_component
GO:0004801 sedoheptulose-7-phosphate molecular_function

KEGG:

id description
K00616 E2.2.1.2, talA, talB; transaldolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914447.2 True 1552 mRNA 0.51 8 30258068 30265561

Neighbor

gene id symbol gene type direction distance location
ddb1 ddb1 coding upstream 131846 30106693 ~ 30126222 (+)
iqcg NA coding upstream 534001 29716593 ~ 29724067 (+)
LOC117597519 NA coding upstream 707772 29520447 ~ 29550296 (+)
si:ch73-103b9.2 c4h16orf46 coding upstream 1480051 28774321 ~ 28778017 (+)
cibar2 fam92b,LOC108442585 coding upstream 1507327 28742035 ~ 28750741 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding downstream 6983 30272544 ~ 30285534 (+)
LOC117597588 NA coding downstream 39071 30304632 ~ 30305794 (+)
b4galnt3b NA coding downstream 45672 30311233 ~ 30353488 (+)
c2cd5 c2cd5,LOC107686569 coding downstream 100058 30365619 ~ 30408560 (+)
LOC117597544 NA coding downstream 113142 30378703 ~ 30379745 (+)
G107223 NA non-coding upstream 193630 29971482 ~ 30064438 (+)
G107222 NA non-coding upstream 286975 29970878 ~ 29971093 (+)
G107216 NA non-coding upstream 334996 29922752 ~ 29923072 (+)
G107140 NA non-coding upstream 568252 29685374 ~ 29689816 (+)
G107075 NA non-coding upstream 775604 29482234 ~ 29482464 (+)
G107387 NA non-coding downstream 96029 30361590 ~ 30429223 (+)
G107382 LOC108264175,LOC108437702 non-coding downstream 187295 30452856 ~ 30455383 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding downstream 292062 30557623 ~ 30562901 (+)
G107629 bbs10 non-coding downstream 463273 30728834 ~ 30729657 (+)
LOC113526871 NA non-coding downstream 562515 30828076 ~ 30829663 (+)
cmc2 cmc2,LOC107711752 other upstream 1453996 28799464 ~ 28804072 (+)
def8 def8 other upstream 2096199 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2187383 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2291760 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 2712542 27526123 ~ 27545526 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 128699 30394260 ~ 30498315 (+)

Expression


Co-expression Network