kcnk6 (LOC108264595)


Basic Information

Item Value
gene id kcnk6
gene name LOC108264595
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20990984 ~ 21003744 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914458.2
tccaatctggcaaccctgttgcTTAGTTTCACATCAAGGCGAGAGATCAaaagtgtgcgtgtgcatgtataaagaagaagaagaagcagaagaagcagaagtAGGAGGCTGGATAAGCTTTGTGTGTATCCTCTGAGCGTCATTTTGCCATTATGTCCACTTCATCCAGGTCGTGTTTTGTGGTGCTggctctggtgtgtgtgtatgtggcgtATCTGGTGCTCGGAGGTTTTGTGTTTTCGGCACTGGAGAAGCCGCTGGAGGAGAAAGTTCAGGCCGAGCTGAATCTTCTCAAACAGCAGCTTATCAGTAACATGAGCTGCGTTAACATCTCCACACTGGAGCAGCTCTTACAGATACTCCTCAACGCGAACAAATACGGAGTGTCACTAGAGCAAAACTCCTCCGACAACTCCAACTGGGACCTGGCGTCCGCGTTGTTTTTCTCCAACACTCTGGTCACCACCATCGGTTATGGCCACACCACTCCGCTGTCTGATGTGGGGAAAGCGTTCGCCATTGTGTATGCCTTATTCGGCGTCCCCTTCACCATGCTGGTGCTGACGGCATGTGTGCAGCGCCTCATGGTGCCGCTGAACCTACGGCCGGTGGCGTCATGGCGTCGGCGGTTCGGCTGGCATCCTCACACTGCCAGCACCATCCACTTTGTCCTCCTGCTCCTGGTGGTCATTGTGTTGTTCTTTTTGGTGCCAGCTACTGTTTTCAGCATCATTGAGGACTCGTGGTCATTTCTGGAggctttttatttctgcttcATCTCCCTTTGCACCATCGGGTTAGGCGACTTTGTCCCAGGAGAGCAGCCCAATCAGAAACTCCGACCACTCTACAAGATCTCTGTTATGGtctACCTGTTTTTAGGTTTAATGGCAATGTACTTTGTCCTCCGTTCTTTCCATAAACTGGCTGATGTTCAGGGATGGACAGCATTTTTCCATTTGCCCAGCTGCGACGACGAAtgtgaagaagagaaagaaaactctGCTGAGGAACCTAACGAGTGTGAGACGGACACAAAGCCACTGGACCCAAGCGCTCGTGTCTCCTACAACTCCATTAGCAAATAGACACCTCCAGACTGACACTCTGTTCGCTGAGCAGCGGAGGATGAGGGAAGTGTAGATTCTGTGTGTGGGGGTCTTCACTTGTAATTTTGCAGACCAGTGCAATGGTAACGCATGTTACAATGGTAATTTTGCATTATTGATAAAGTTATAGGGGAACAACAAAGGACTGTTTCATCTGGTAAGGTTTTCTTTACTAGATTTTCATGTTAACTGGACcaattttaggttttttttttcttctagtaACCAAAACCAGCAATAAATTGTTGAAGTTTGTTTTTCTGCTATCTTGGACCACATTGGACAGGTACATTTTGGGTACATACCAATGTTTTTTGAAACCAGAACAAATTGAAATATCAGGCAGTCAGAGTGGATTTCTGCTTCCATGCGTTATATTTATATCCGAAATGTGGAGAATTTTTTACTTTCCCTCCTTTCTTCTCTTTATAATTTTTCAGGAGTGTGTGGTTTCTAGAATTTTTCTGAATGACCTTATGAACTATGAAAAtctaaaatgaaatcattttagtTTTCCTACTTGTTGGCTGTTTGGACCACTTGTGCCTTACTCTAAGATTATAAATTTGGCTTCTTTTAgtattatttacagaaatttgTCACTTTCTTTCCAGTTCAGTCTTTGGCTCTTGGGTGCATTATGGGTGAACATATTATTTAAAGGTATTAGATAAAGGTGACGTTGGACATTTAACACAGTGCAATATCAGTCAGTCTGTATGGAGCTGTGCTTACACAcgtttgtattttttaatttttttttaatcacatcacTTTTCCGGAGACATCTTCGATCTGAGGCCTACTGTTTCTGTAGGGCCTCTGTGTAAACTATGCAAcagttaaatataataaagattagaaataattttattttgtatcacTACTTGTTTGGACCACTTGTGCCTTATTCTGGTGTTCTGAGGTTTTACATTTGCAGTGACAATCTGTGAAACTtgatatttatgttatttatatatggCTGACCATTTTTTGCTTCTTATCAGCTAataaaatttgttcattttttcagta

Function

NR:

description
PREDICTED: potassium channel subfamily K member 6

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K04912 KCNK1, K2P1.1; potassium channel subfamily K member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914458.2 True 2144 mRNA 0.43 3 20990984 21003744

Neighbor

gene id symbol gene type direction distance location
si:ch211-14c7.2 LOC108264030 coding upstream 5888 20971589 ~ 20985096 (+)
pld3 pld3 coding upstream 66695 20906063 ~ 20924289 (+)
foxa3 foxa3 coding upstream 126790 20860782 ~ 20864194 (+)
sphkap sphkap coding upstream 171656 20773604 ~ 20819328 (+)
dner dner coding upstream 333068 20635028 ~ 20657916 (+)
shkbp1 shkbp1,LOC107692479,LOC107656962,LOC107724139 coding downstream 105169 21108913 ~ 21124986 (+)
LOC113526806 LOC108264295 coding downstream 251320 21255064 ~ 21311506 (+)
LOC113526557 zgc:86725,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding downstream 314441 21318185 ~ 21325267 (+)
LOC113526575 LOC108264858,LOC108440598 coding downstream 336652 21340396 ~ 21463432 (+)
golim4a golim4 coding downstream 586882 21590626 ~ 21618336 (+)
G102415 NA non-coding upstream 56890 20930187 ~ 20934094 (+)
G102374 NA non-coding upstream 383390 20606602 ~ 20607594 (+)
G102370 NA non-coding upstream 409039 20578618 ~ 20581945 (+)
G102327 NA non-coding upstream 514813 20475804 ~ 20476171 (+)
G102325 NA non-coding upstream 517247 20473342 ~ 20473737 (+)
G102585 NA non-coding downstream 592 21004336 ~ 21004721 (+)
G102703 NA non-coding downstream 145340 21149084 ~ 21194404 (+)
G102903 NA non-coding downstream 501000 21504744 ~ 21505622 (+)
G103130 NA non-coding downstream 1045430 22049174 ~ 22049382 (+)
G103140 NA non-coding downstream 1124625 22128369 ~ 22170834 (+)
prx NA other upstream 23713 20939413 ~ 20967271 (+)
irf2bp1 irf2bp1 other upstream 141646 20844674 ~ 20849338 (+)
pid1 pid1 other upstream 304796 20638760 ~ 20686188 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other upstream 898052 20076965 ~ 20092932 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other upstream 937842 20004356 ~ 20053142 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other downstream 22283 21026027 ~ 21102216 (+)
zbbx zbbx other downstream 758703 21762447 ~ 21813210 (+)
LOC113526422 p2ry6 other downstream 1938965 22942709 ~ 22983599 (+)
relt relt other downstream 2109340 23113084 ~ 23148872 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other downstream 2159902 23163646 ~ 23259257 (+)

Expression


Co-expression Network