agk (agk)


Basic Information

Item Value
gene id agk
gene name agk
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14325076 ~ 14335323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926924.2
GGAGGGGAAAGAAATTGCTGGTACACCGGTCATCATGCTTTCTGAAAAATGTCAAACCCAGTGTAGAAATAACGCTGCCGTTGAGACATATTGaaggtttttgttttaacaGTCATTGTCATGCTAATGTTGGATGTTTTCTCTTGTAGCTAGCTAGTGATTTACACAGGAACAATGGCCCGAGTTGTGAAAGTGTTACGGACTCTACGAAATCACTGGAAAAAATCGACTTTTGCTGTATGTGTCCTGTCTTATGGTGGACACTGGTTATACGGAAAGCACTGTGACAATGTACTGCGAAGAGAGGCATGTCAGGAGGCTAGGAAATTTGGCCAGAAATTAATTGGACCCCAGGAGTCACTGCAGAAAGCCACAGTAATCCTGAATCCTGCGGCATGCAAAGGaaaGGCTAACAATCTGTTTGAAAAGAACGCAGCCCCTATTCTACATCTTGCTGGCATTGAGGTTAAAGTTATAAAGACAGATTATGAAGGGCAAGCCAAAAAGCTAATGGATCTGATGGAACAGACGGACATGTTGATTGTTGCTGGGGGTGATGGAACCCTGCAGGAGgTGATAACTGGCTTGCTGCGCAGACCTGATGAGGAAGCGTTCAGTAAAACTCCCATTGGCTTCATTCCTCTGGGCTCTCAGAACTCCTTGAGCCAAAGTCTGCATATAGTTACTGATGACAAAGTAAAATGCATCACGTCAGCAACGCTGTCTATTCTGAAAGGGGAGACGGTGCCACTGGATGTCCTTCAGATAAAGAGTGAGAAGGAGCAGCCTGTCTTTGCTCTTTTAAGTTTACGCTGGGGTTCCTTCCGAGATGTTGCGACATCCATTAGCAAATATTGGTATCTTGGACCTTTAAAAACAAGAGCAGCACACTGGTTTAGTACACTAAGGGAATGGCCACAGATGCATCATGCTTCTGTCTCGTACCTGCCTCCCATCCCTCGACCCCCAGATCTGCCCGATGTGAAGCCCGTGAGACCCAGTCTGCTCTATCGCATCTATCGGAGACTTAAAAACTACTGGACGCCTCCTCCAGAAGAGCCGCAAGTAGAGGCAGAACCAGAGCGCTGGGAGGATAAGCAGATCTCTACAATGGAGCTCACAATCAGCACACAGAACAGGAATCCGCGGACAGATGATTCCCTGGTGCTCTCTGTGGAGCCAGACACACTTACAGTTGGACAGTTCATCACAGAAggGATTAAAAAAGCTGAAAACCCATTGGAGTGCACAGAGAAGGCACTTCAGATAGAGGCAAGCGTATGTCGGCTCAGTTTGCCCCAGGAGGGCGCTGGCTTTTTTGACGTTGACAATGAAGAGTTTGAGGCAATGCCAGTGGAAGTGAAGCTTTTGCCAAGGAAACTGAGGTTCTTTTGCAGCTCCGAACGCAGAGACCAGCTGGCACAGATGAACTGACCAAGATGCTGAAGGTGCTGAAACGCACAGTGTGGAAGGTTCAGAGATCTGCTCTCTAATTTATTGGACTTTTAGCCATGTATCACAAACTTTTTCTGCCTGGGTGCTAATTACACAGCATCAGAGCCATATTATGACAGTATAGTGTCATGTTACTTAAATCTGGATTTGATGGTTGAATGTTTTCAATGGATTCTATggctaaaaaaaatgactaatgTATGTTAGAGAACACAAACGCCTCCAAGCTCAGTTAAAAAAGTGTGCTTCAGTACACATAGCACCAGGAAGCTGTATGTGCAATGTTTGCTTTGCTGGACATGAGTGTGATGGtatgaaggaaggaagaggaCGCAACACCGTTGAGCTTCCTTAACATATTACAAACCGTGTTGCTTACATGTGGACCAAGGACCAGGCATAAATGAACCATTATTCCAACTGATTATGTAAGAGAAgttccattaaaaaaacataactaCAAACATGA
>XM_034305307.1
GGAGGGGAAAGAAATTGCTGGTACACCGGTCATCATGCTTTCTGAAAAATGTCAAACCCAGTGTAGAAATAACGCTGCCGTTGAGACATATTGaaggtttttgttttaacaGTCATTGTCATGCTAATGTTGGATGTTTTCTCTTGTAGCTAGCTAGTGATTTACACAGGAACAATGGCCCGAGTTGTGAAAGTGTTACGGACTCTACGAAATCACTGGAAAAAATCGACTTTTGCTGTATGTGTCCTGTCTTATGGTGGACACTGGTTATACGGAAAGCACTGTGACAATGTACTGCGAAGAGAGGCATGTCAGGAGGCTAGGAAATTTGGCCAGAAATTAATTGGACCCCAGGAGTCACTGCAGAAAGCCACAGTAATCCTGAATCCTGCGGCATGCAAAGGaaaGGCTAACAATCTGTTTGAAAAGAACGCAGCCCCTATTCTACATCTTGCTGGCATTGAGGTTAAAGTTATAAAGACAGATTATGAAGGGCAAGCCAAAAAGCTAATGGATCTGATGGAACAGACGGACATGTTGATTGTTGCTGGGGGTGATGGAACCCTGCAGGAGgTGATAACTGGCTTGCTGCGCAGACCTGATGAGGAAGCGTTCAGTAAAACTCCCATTGGCTTCATTCCTCTGGGCTCTCAGAACTCCTTGAGCCAAAGTCTGCATATAGTTACTGATGACAAAGTAAAATGCATCACGTCAGCAACGCTGTCTATTCTGAAAGGGGAGACGGTGCCACTGGATGTCCTTCAGATAAAGAGTGAGAAGGAGCAGCCTGTCTTTGCTCTTTTAAGTTTACGCTGGGGTTCCTTCCGAGATGTTGCGACATCCATTAGCAAATATTGGTATCTTGGACCTTTAAAAACAAGAGCAGCACACTGGTTTAGTACACTAAGGGAATGGCCACAGATGCATCATGCTTCTGTCTCGTACCTGCCTCCCATCCCTCGACCCCCAGATCTGCCCGATGTGAAGCCCGTGAGACCCAGTCTGCTCTATCGCATCTATCGGAGACTTAAAAACTACTGGACGCCTCCTCCAGAAGAGCCGCAAGTAGAGGCAGAACCAGAGCGCTGGGAGGATAAGCAGATCTCTACAATGGAGCTCACAATCAGCACACAGAACAGGAATCCGGTGAAAAGGCGGACAGATGATTCCCTGGTGCTCTCTGTGGAGCCAGACACACTTACAGTTGGACAGTTCATCACAGAAggGATTAAAAAAGCTGAAAACCCATTGGAGTGCACAGAGAAGGCACTTCAGATAGAGGCAAGCGTATGTCGGCTCAGTTTGCCCCAGGAGGGCGCTGGCTTTTTTGACGTTGACAATGAAGAGTTTGAGGCAATGCCAGTGGAAGTGAAGCTTTTGCCAAGGAAACTGAGGTTCTTTTGCAGCTCCGAACGCAGAGACCAGCTGGCACAGATGAACTGACCAAGATGCTGAAGGTGCTGAAACGCACAGTGTGGAAGGTTCAGAGATCTGCTCTCTAATTTATTGGACTTTTAGCCATGTATCACAAACTTTTTCTGCCTGGGTGCTAATTACACAGCATCAGAGCCATATTATGACAGTATAGTGTCATGTTACTTAAATCTGGATTTGATGGTTGAATGTTTTCAATGGATTCTATggctaaaaaaaatgactaatgTATGTTAGAGAACACAAACGCCTCCAAGCTCAGTTAAAAAAGTGTGCTTCAGTACACATAGCACCAGGAAGCTGTATGTGCAATGTTTGCTTTGCTGGACATGAGTGTGATGGtatgaaggaaggaagaggaCGCAACACCGTTGAGCTTCCTTAACATATTACAAACCGTGTTGCTTACATGTGGACCAAGGACCAGGCATAAATGAACCATTATTCCAACTGATTATGTAAGAGAAgttccattaaaaaaacataactaCAAACATGA

Function

symbol description
agk Predicted to enable acylglycerol kinase activity; ceramide kinase activity; and diacylglycerol kinase activity. Predicted to be involved in ceramide biosynthetic process; phosphorylation; and protein insertion into mitochondrial inner membrane. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Predicted to be integral component of mitochondrial inner membrane. Predicted to be part of TIM22 mitochondrial import inner membrane insertion complex. Predicted to be active in membrane and mitochondrion. Human ortholog(s) of this gene implicated in Sengers syndrome and cataract 38. Orthologous to human AGK (acylglycerol kinase).

NR:

description
acylglycerol kinase, mitochondrial-like

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0046486 glycerolipid metabolic process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0047620 acylglycerol kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG:

id description
K09881 AGK; acylglycerol kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926924.2 False 1924 mRNA 0.45 15 14325076 14335323
XM_034305307.1 True 1933 mRNA 0.45 15 14325076 14335323

Neighbor

gene id symbol gene type direction distance location
rapsn rapsn coding upstream 10259 14304663 ~ 14314817 (+)
kbtbd4 kbtbd4,LOC107596956,LOC107738697,LOC107686314,LOC107708223,LOC107672308 coding upstream 24412 14295711 ~ 14300664 (+)
tle3a LOC108264729,LOC108424090,LOC107596960,LOC107686309 coding upstream 139392 14164588 ~ 14185684 (+)
uacaa LOC108264780 coding upstream 218727 14091750 ~ 14106349 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding upstream 236177 14078741 ~ 14088899 (+)
wee2 wee2 coding downstream 13844 14349167 ~ 14354920 (+)
bida NA coding downstream 20570 14355893 ~ 14364805 (+)
cftr cftr,LOC107738689,LOC107596947,LOC107583749 coding downstream 91209 14426532 ~ 14453076 (+)
pgpep1l pgpep1l coding downstream 193553 14528876 ~ 14533258 (+)
fam169b fam169b coding downstream 305637 14640960 ~ 14648967 (+)
G99276 ighmbp2 non-coding upstream 6422 14317597 ~ 14318654 (+)
G99261 NA non-coding upstream 62559 14261441 ~ 14262517 (+)
G99260 kif23 non-coding upstream 64334 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 334923 13989942 ~ 13990153 (+)
G98996 NA non-coding upstream 400763 13891424 ~ 13924313 (+)
G99362 NA non-coding downstream 295012 14630335 ~ 14631361 (+)
G99516 LOC108263939 non-coding downstream 390295 14725618 ~ 14725938 (+)
G99518 NA non-coding downstream 394661 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 691164 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 719944 15055267 ~ 15058771 (+)
skor1b skor1 other upstream 282624 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 368725 13932539 ~ 13956351 (+)
G98972 NA other upstream 535686 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 609310 13691607 ~ 13715766 (+)
nlrc5 nlrc5 other upstream 1466542 12837299 ~ 12858534 (+)
G99341 synm other downstream 185478 14520801 ~ 14524480 (+)
carmil2 carmil2,rltpr other downstream 965159 15300482 ~ 15346146 (+)
G100306 NA other downstream 2014134 16349457 ~ 16349787 (+)
G100345 NA other downstream 2264934 16600257 ~ 16601067 (+)
rgma NA other downstream 2322278 16657601 ~ 16680793 (+)

Expression


Co-expression Network