wfdc1 (wfdc1,LOC102778323,LOC107553961)


Basic Information

Item Value
gene id wfdc1
gene name wfdc1,LOC102778323,LOC107553961
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 10425740 ~ 10439871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926925.2
GTTCCCTCATTCTTCCCTCTCTTTTCTCCACTCCTCTTACTTTCCTTCCCTTTTTTCTCCCCACCCCACACTGCTTCTCCTCTCACCTTCCCTCTAGTTTGTTCTCCCAGATGTAAAGCACTCTTCCGTACGAGCAAGCTCGTGTAAGTGCACAAGGACAGAGACCAGCACTGGTGTACAGGCTGTGGGGCAACCACAAGGAAATACACGCATTCACTCACACGCTCACTTACACACAAACTCCAAAAGGAAACCGCAGtgtaaacacacaaagacaataaaaaattGTCAAGAGTCTAGACAGCAGGACGAAACTTCAAAGCGTGGGAGTCGAGAGGAGAGCgagaagaggagagaggcaAGAAAAGAGAGGAGCGAGTGAAGGAGAAGAGCCATGGCAGCCACTCAGATCCCAAGCCGGCTAGCTCTGCTCGTCTGTCTGCTGCTGCTCGTCACCGGCACAGAGAGCAAACGCAGACTCAGGAGGAGAGGACTCAGCCAGAAGGATTACGAGTACCCAAACCACTCCCAGTCCAATCAACACCAGAAGAATGATCGGTGCCCACCTCCGCCTCAGATGCTTCCCGAGAGGGCGTGTGAGGTGCCCGTCTGCCGCTCAGACTCAGAATGTGAGAGACACAAACGCTGCTGTTACAATGGCTGTATCTACGCCTGTCTGGAGTCAGTTCAGCCTCCACCTGTGCTGGACTGGTTGGTGCAGCCAAAGCCACGGTGGCTTGGTGGAAACGGCTGGCTCTTAGATGGACCAGAGGAGGTTCTCCAGGCTGAGGCCTGCAGCACCACAGAGGACGGGGATGAGCCTTTACATTGTCCTACTGGATACGAATGCCACATCATTAACCCTGGAAACCCCTCTGCGGGCATCCCCAACCGAGGCCAGTGTATCAAACAACGGGGAAACTCAGATGGTCGTAGCCTGAGGCACAAGTACTTCAAAGATCACAAGGATTATTTAGGAAGCAACTCCAACATTGCAGTGGGTTATGAGAAACATCACAAGCACTTAGGCTGAAAAGCagGTGACCTTCATAGCCCTACAGAATctacacaacaaaacaaaaccagtcAACATTTCTGCGGAAACTAGATGTCCTTATTTCACAGGTCACAAAGCTGTTATTTGGTGCTTTATGTTCGAGGTGCTATAACACGGAAAAATCAACATTTCCTACCTCTTCCAAACAGCACACAGAATCTTATAACCTGCCAGCTCAACTTCACGACTTTCTCCTAGAAACTCACTGTTTAGTAAAAATAGTATTTGTTCTCatagtatttaaaatatttaaagtaagCTAAACCTGAGAATGTACCAAAGATACATGTACCCTTACACACTTTACCAGGCTACGGGACAACCAAAGAATACGTCTGCACACAGACATCTCAGGCATAATTTTAACATAACAAAGCCACGTTACATAGATTCCTCCATTGAAATACTGCAAATTAAGTCATTTGGCTCGGGAATGTTCGGGGATCCTCTAGGAGGAGCTGTAATCTGCAGCCAGGGACAGAGAACTTCAGACTCAACTTCTCATCCTGTTCTCACTTTGAACCTCAGCAGGAAAAGTggaaagaaaattaatgaaaaaaaaattacagtttccttaattacaacaaagaaaaatatgggCTATTAATCCtgtattcataatgcattatatagacacatttataatgtgtg
>XM_026926926.2
AGTTCCCTCATTCTTCCCTCTCTTTTCTCCACTCCTCTTACTTTCCTTCCCTTTTTTCTCCCCACCCCACACTGCTTCTCCTCTCACCTTCCCTCTAGTTTGTTCTCCCAGATGTAAAGCACTCTTCCGTACGAGCAAGCTCGTGTAAGTGCACAAGGACAGAGACCAGCACTGGTGTACAGGCTGTGGGGCAACCACAAGGAAATACACGCATTCACTCACACGCTCACTTACACACAAACTCCAAAAGGAAACCGCAGtgtaaacacacaaagacaataaaaaattGTCAAGAGTCTAGACAGCAGGACGAAACTTCAAAGCGTGGGAGTCGAGAGGAGAGCgagaagaggagagaggcaAGAAAAGAGAGGAGCGAGTGAAGGAGAAGAGCCATGGCAGCCACTCAGATCCCAAGCCGGCTAGCTCTGCTCGTCTGTCTGCTGCTGCTCGTCACCGGCACAGAGAGCAAACGCAGACTCAGGAGGAGAGGACTCAGCCAGAAGGATTACGAGTACCCAAACCACTCCCAGTCCAATCAACACCAGAAGAATGATCGGTGCCCACCTCCGCCTCAGATGCTTCCCGAGAGGGCGTGTGAGGTGCCCGTCTGCCGCTCAGACTCAGAATGTGAGAGACACAAACGCTGCTGTTACAATGGCTGTATCTACGCCTGTCTGGAGTCAGTTCAGCCTCCACCTGTGCTGGACTGGTTGGTGCAGCCAAAGCCACGGTGGCTTGGTGGAAACGGCTGGCTCTTAGATGGACCAGAGGAGGTTCTCCAGGCTGAGGCCTGCAGCACCACAGAGGACGGGGATGAGCCTTTACATTGTCCTACTGGATACGAATGCCACATCATTAACCCTGGAAACCCCTCTGCGGGCATCCCCAACCGAGGCCAGTGTATCAAACAACGGGGAAACTCAGGAAGCAACTCCAACATTGCAGTGGGTTATGAGAAACATCACAAGCACTTAGGCTGAAAAGCagGTGACCTTCATAGCCCTACAGAATctacacaacaaaacaaaaccagtcAACATTTCTGCGGAAACTAGATGTCCTTATTTCACAGGTCACAAAGCTGTTATTTGGTGCTTTATGTTCGAGGTGCTATAACACGGAAAAATCAACATTTCCTACCTCTTCCAAACAGCACACAGAATCTTATAACCTGCCAGCTCAACTTCACGACTTTCTCCTAGAAACTCACTGTTTAGTAAAAATAGTATTTGTTCTCatagtatttaaaatatttaaagtaagCTAAACCTGAGAATGTACCAAAGATACATGTACCCTTACACACTTTACCAGGCTACGGGACAACCAAAGAATACGTCTGCACACAGACATCTCAGGCATAATTTTAACATAACAAAGCCACGTTACATAGATTCCTCCATTGAAATACTGCAAATTAAGTCATTTGGCTCGGGAATGTTCGGGGATCCTCTAGGAGGAGCTGTAATCTGCAGCCAGGGACAGAGAACTTCAGACTCAACTTCTCATCCTGTTCTCACTTTGAACCTCAGCAGGAAAAGTggaaagaaaattaatgaaaaaaaaattacagtttccttaattacaacaaagaaaaatatgggCTATTAATCCtgtattcataatgcattatatagacacatttataatgtgtg

Function

symbol description
wfdc1 Predicted to enable peptidase inhibitor activity. Predicted to be involved in regulation of cell growth. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human WFDC1 (WAP four-disulfide core domain 1).

NR:

description
PREDICTED: WAP four-disulfide core domain protein 1-like

GO:

id name namespace
GO:0010466 negative regulation of peptidase activity biological_process
GO:0005576 extracellular region cellular_component
GO:0030414 peptidase inhibitor activity molecular_function

KEGG:

id description
K23635 WFDC1; WAP four-disulfide core domain protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926925.2 True 1708 mRNA 0.46 7 10425740 10439870
XM_026926926.2 False 1658 mRNA 0.47 6 10425740 10439871

Neighbor

gene id symbol gene type direction distance location
mical3a mical3a,LOC108264267,LOC108414616,LOC107673136,LOC107559327 coding downstream 26865 10295851 ~ 10398875 (-)
LOC113534539 LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 coding downstream 407057 9997813 ~ 10018683 (-)
bicd1a bicd1,LOC107722484 coding downstream 692962 9694077 ~ 9732778 (-)
fgd4a fgd4 coding downstream 733655 9625063 ~ 9692085 (-)
tbxas1 tbxas1 coding downstream 1011353 9349891 ~ 9414387 (-)
si:dkey-246g23.4 NA coding upstream 9115 10448986 ~ 10453158 (-)
kcng4a kcng4,kcng4a,LOC107553964,LOC107738382,LOC107749318,LOC107670163,LOC107684667 coding upstream 37315 10477186 ~ 10505123 (-)
zgc:173742 zgc:173742,LOC108264272,LOC108415671,LOC107684664,LOC107749320,LOC107553995 coding upstream 147051 10586922 ~ 10642050 (-)
cdh13 cdh13,LOC107684661,LOC107722459,LOC107738387 coding upstream 267000 10706871 ~ 11042272 (-)
si:dkey-238o13.4 pecr,LOC108263951,LOC108425018,LOC107553987,LOC107670155,LOC107684673,LOC107583841,LOC107749293 coding upstream 729931 11169802 ~ 11172027 (-)
G97173 NA non-coding downstream 54415 10370748 ~ 10371325 (-)
G97172 NA non-coding downstream 55323 10369263 ~ 10370417 (-)
G97054 NA non-coding downstream 330382 10071553 ~ 10095358 (-)
G96840 NA non-coding downstream 541285 9819387 ~ 9884455 (-)
G96677 hipk2 non-coding downstream 921799 9417586 ~ 9503941 (-)
G97204 NA non-coding upstream 39196 10479067 ~ 10479287 (-)
G97224 NA non-coding upstream 79226 10519097 ~ 10519305 (-)
G97225 NA non-coding upstream 80924 10520795 ~ 10520997 (-)
G97246 mlycd non-coding upstream 217321 10657192 ~ 10661052 (-)
G97601 NA non-coding upstream 747624 11187495 ~ 11188023 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 130917 10266978 ~ 10294823 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other downstream 507259 9822233 ~ 9918481 (-)
LOC113534661 NA other downstream 653720 9750882 ~ 9772020 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other downstream 1209925 9174655 ~ 9215815 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 1947403 8395812 ~ 8478337 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 87239 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 732816 11172687 ~ 11179608 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 1146186 11586057 ~ 11610964 (-)
plekhg7 plekhg7,LOC107583891 other upstream 1312654 11752525 ~ 11769986 (-)
sspn sspn other upstream 1431037 11870908 ~ 11878204 (-)

Expression


Co-expression Network