tph2 (LOC108263971,LOC108423504,LOC107749937,LOC107686260)


Basic Information

Item Value
gene id tph2
gene name LOC108263971,LOC108423504,LOC107749937,LOC107686260
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12458515 ~ 12463241 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926945.1
GTAGAGCAGCGCACTCAGCTTTCAATGGCTTCACAGGTGCAAAAGAAGAAGGGGTCCGAAGCAGTCGCTGTGCAGTCTGAAGTGCAAGGCAAAACCAAGCCTCAAGAAACAATGTCTATGCCGTCTGACCCTCAGAATCAGAAAAAGGGTCCGGAGATCCCAAAGTCACCGGTGGGGTTGCTGAGGAAGAGGGGTAAGGAAGCAATTCCAAAGATGCAACCAGCAATGATGATGTTCTCCAGCAAATACTGGGCACGTCGAGGATTATCTCTGGATTCAGCTATGCTTGATCAGCAGCACCTAGGAAATAATATGCTTCGTAGGACATCTTTTAGTCGCATAGATGAGAAACCGGACAAAGAGGATACAGGCTCGGCTTATGACAGCAGTAAAACAGCAGTGATCTTCTCTCTGAAGAACGAGGTGGGATGTCTGGTGAAGGCTCTTCGGCTGTTTCAGGAGAAGCATGTCAATTTGGCCCACATTGAATCACGCAAATCAAAGCGAGTCTCCACAGAGGTGGAGATATATGCAGAGTGTAGCTGCACTAAAAAGGAATTCAACGAGCTGGTGCAGCACCTTAAAGACCATGTCAACATTGTCTCATATAACACACCTCAAAACGTGTGGTCTGTAGAGACTGACTgtttggactgtgtgtgtgttttgggtggcTTGCCAGATGTAGAAGGAGTCCCTTGGTTTCCCCAGAAGATCTCTGAATTGGACCAGTGCTCACACAGAGTGCTCATGTATGGCTCAGAGCTGGACGCCGATCATCCGGGATTTAAAGACAACATCTATAGGCAGAGGAGGAAGTACTTTGTAGAAGTCGCAATGAACTACAAATTTGGCCAACCCATCCCACGCATTGAGTACACACCAGAAGAGGTGAAGACTTGGGGAGTGGTGTTCCGGGAGCTCACTAAACTTTATCCCACCCATGCCTGCCGCGAGTACATGAAAAACCTCCCATTGCTCACAAAACATTGTGGATACCGTGAGGACAATATTCCCCAGCTGGAGgatgtctctctcttcctaaGAGAGAGGTCAGGGTTCACAGTGCGACCTGTAGCAGGTTATCTGTCACCTAGAGACTTCCTGGCTGGTCTGGCATATCGAGTGTTCAACTGCACTCAGTATGTACGCCACAGCACTGACCCACTCTACACACCAGAGCCGGACACTTGCCATGAGCTTCTGGGTCATGTCCCACTCTTAGCAGATCCCAAGTTTGCTCAGTTCTCACAGGAAATTGGCCTAGCCTCTCTTGGGGCTTCGGACGAAGACGTGCAGAAGTTGGCTACAtGCTATTTCTTCACCATTGAGTTTGGTCTTTGCAAACAAGATGGCCAGTTGAGAGCCTATGGAGCAGGACTGCTTTCTTCAATTGGAGAGCTAAGGCATGCATTATCAGACAAAGCTGTAGTGAAGCAGTTTGATCCCAAAACCACATGCTACCAGGAGTGCCTCATCACAACTTTCCAAGATGTTTACTTTGTCTCAGAGAGTTTTGAAGAGGCCAAAGAAAAGATGAGGGACTTTGCCAAAACGATCAAGAGGCCCTTCTCTGTCTACTATAACCCATACACCCAGAGTATTGACCTGCTGAAGGACACCAGGAGCATTGAGAATGTGGTGCAGGACCTCCGCAGTGACCTCACCACAGTCTGTGATGCACTGGGGAAAATGAACAAGTACCTGGGCATCTAGAAGCACACAAATTAGTTTTAGCCACACTTTTTTCTGCTTtgaacaaaaaaaccaaactgCAATTACATTACCTAGTGGCTAAAGGTGTTTAATGTATAACCTGAACCCAAAGTCAAACAGAGCTTGGTCTTCCTGTCTGGTGTCTTCATGTATTTGCCAGCTTTCATAGTCAGTTATTCATATGTGCATGACTGCCATTGCTGCAGAAGCTACAGGATGCATCCGTTTGTGGTTGCTGATTGTAATTTGCTAATCATAGTATTCTGTAATTCAATTGCCCAAGTTCCTGACTAGGTCCAACTTCATTATGAGAGAGCAAACAGGAAGTTTGAGATGGATGATTCCAGATGCTAAGGCAGAAATATACCCCACTTTGTTCTAGTCAATTAGCAGCACAGTCTGCTTCACAGACCCTCTGACAGTCTAAAGTCACAACACGATGAATGATATGGAATGAATGCTGGTACATTATCATTGAATCATATGGAACTGTTTTGTTGCTTTTGACTGAAGAAAACGATTGGgcaatgaaaataaatctaTCCAATATATTA
>XM_026926946.1
GTAGAGCAGCGCACTCAGCTTTCAATGGCTTCACAGGTGCAAAAGAAGAAGGGGTCCGAAGCAGTCGCTGTGCAGTCTGAAGTGCAAGGCAAAACCAAGCCTCAAGAAACAATGTCTATGCCGTCTGACCCTCAGAATCAGAAAAAGGGTCCGGAGATCCCAAAGTCACCGGTGGGGTTGCTGAGGAAGAGGGGTAAGGAAGCAATTCCAAAGATGCAACCAGCAATGATGATGTTCTCCAGCAAATACTGGGCACGTCGAGGATTATCTCTGGATTCAGCTATGCTTGATCAGCAGCACCTAGGAAATAATATGCTTCGTAGGACATCTTTTAGTCGCATAGATGAGAAACCGGACAAAGAGGATACAGGCTCGGCTTATGACAGCAGTAAAACAGCAGTGATCTTCTCTCTGAAGAACGAGGTGGGATGTCTGGTGAAGGCTCTTCGGCTGTTTCAGGAGAAGCATGTCAATTTGGCCCACATTGAATCACGCAAATCAAAGCGAGTCTCCACAGAGGTGGAGATATATGCAGAGTGTAGCTGCACTAAAAAGGAATTCAACGAGCTGGTGCAGCACCTTAAAGACCATGTCAACATTGTCTCATATAACACACCTCAAAACGTGTGGTCTGTAGAGACTGATGTAGAAGGAGTCCCTTGGTTTCCCCAGAAGATCTCTGAATTGGACCAGTGCTCACACAGAGTGCTCATGTATGGCTCAGAGCTGGACGCCGATCATCCGGGATTTAAAGACAACATCTATAGGCAGAGGAGGAAGTACTTTGTAGAAGTCGCAATGAACTACAAATTTGGCCAACCCATCCCACGCATTGAGTACACACCAGAAGAGGTGAAGACTTGGGGAGTGGTGTTCCGGGAGCTCACTAAACTTTATCCCACCCATGCCTGCCGCGAGTACATGAAAAACCTCCCATTGCTCACAAAACATTGTGGATACCGTGAGGACAATATTCCCCAGCTGGAGgatgtctctctcttcctaaGAGAGAGGTCAGGGTTCACAGTGCGACCTGTAGCAGGTTATCTGTCACCTAGAGACTTCCTGGCTGGTCTGGCATATCGAGTGTTCAACTGCACTCAGTATGTACGCCACAGCACTGACCCACTCTACACACCAGAGCCGGACACTTGCCATGAGCTTCTGGGTCATGTCCCACTCTTAGCAGATCCCAAGTTTGCTCAGTTCTCACAGGAAATTGGCCTAGCCTCTCTTGGGGCTTCGGACGAAGACGTGCAGAAGTTGGCTACAtGCTATTTCTTCACCATTGAGTTTGGTCTTTGCAAACAAGATGGCCAGTTGAGAGCCTATGGAGCAGGACTGCTTTCTTCAATTGGAGAGCTAAGGCATGCATTATCAGACAAAGCTGTAGTGAAGCAGTTTGATCCCAAAACCACATGCTACCAGGAGTGCCTCATCACAACTTTCCAAGATGTTTACTTTGTCTCAGAGAGTTTTGAAGAGGCCAAAGAAAAGATGAGGGACTTTGCCAAAACGATCAAGAGGCCCTTCTCTGTCTACTATAACCCATACACCCAGAGTATTGACCTGCTGAAGGACACCAGGAGCATTGAGAATGTGGTGCAGGACCTCCGCAGTGACCTCACCACAGTCTGTGATGCACTGGGGAAAATGAACAAGTACCTGGGCATCTAGAAGCACACAAATTAGTTTTAGCCACACTTTTTTCTGCTTtgaacaaaaaaaccaaactgCAATTACATTACCTAGTGGCTAAAGGTGTTTAATGTATAACCTGAACCCAAAGTCAAACAGAGCTTGGTCTTCCTGTCTGGTGTCTTCATGTATTTGCCAGCTTTCATAGTCAGTTATTCATATGTGCATGACTGCCATTGCTGCAGAAGCTACAGGATGCATCCGTTTGTGGTTGCTGATTGTAATTTGCTAATCATAGTATTCTGTAATTCAATTGCCCAAGTTCCTGACTAGGTCCAACTTCATTATGAGAGAGCAAACAGGAAGTTTGAGATGGATGATTCCAGATGCTAAGGCAGAAATATACCCCACTTTGTTCTAGTCAATTAGCAGCACAGTCTGCTTCACAGACCCTCTGACAGTCTAAAGTCACAACACGATGAATGATATGGAATGAATGCTGGTACATTATCATTGAATCATATGGAACTGTTTTGTTGCTTTTGACTGAAGAAAACGATTGGgcaatgaaaataaatctaTCCAATATATTA

Function

NR:

description
tryptophan 5-hydroxylase 2-like

GO:

id name namespace
GO:0042427 serotonin biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0004510 tryptophan 5-monooxygenase activity molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
K00502 TPH1_2; tryptophan 5-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926945.1 True 2270 mRNA 0.46 11 12458515 12463241
XM_026926946.1 False 2231 mRNA 0.46 11 12458515 12463241

Neighbor

gene id symbol gene type direction distance location
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding downstream 62853 12388873 ~ 12395662 (-)
swap70b swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307 coding downstream 73162 12363559 ~ 12385353 (-)
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding downstream 154818 12282297 ~ 12303697 (-)
LOC113534448 NA coding downstream 189398 12267333 ~ 12269117 (-)
mgat4c mgat4c,LOC107740326,LOC107553950 coding downstream 267154 12067030 ~ 12191361 (-)
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding upstream 2905 12466146 ~ 12476898 (-)
has3 has3,LOC107740342,LOC107672271,LOC107707223 coding upstream 18990 12482231 ~ 12489322 (-)
tango6 tango6 coding upstream 28154 12491395 ~ 12518992 (-)
il17c il17c coding upstream 56304 12519545 ~ 12522723 (-)
zc3h18 zc3h18,LOC106573693 coding upstream 61018 12524259 ~ 12552261 (-)
G98343 NA non-coding downstream 182286 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 183104 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 761850 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 765436 11690997 ~ 11693079 (-)
G97831 NA non-coding downstream 981401 11396116 ~ 11477114 (-)
G98383 NA non-coding upstream 14662 12477903 ~ 12478277 (-)
G98551 NA non-coding upstream 248853 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 265203 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 275708 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 300658 12763899 ~ 12774207 (-)
akip1 LOC108264820 other downstream 34537 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 53234 12396507 ~ 12405281 (-)
admb NA other downstream 113063 12311822 ~ 12345452 (-)
sspn sspn other downstream 580311 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 688529 11752525 ~ 11769986 (-)
G98770 NA other upstream 582582 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1087439 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1872695 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2883925 15347166 ~ 15357563 (-)
G101178 NA other upstream 5724206 18187447 ~ 18196806 (-)

Expression


Co-expression Network