bida


Basic Information

Item Value
gene id bida
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14355893 ~ 14364805 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926947.2
ATCGCTCATGCTCTGTGTTTGCGTTAACGCTGAACTGCACTGGTACTTCAGGTGGCGATATAAACTTGTCGCGGGAGAGAGAGCTGTAAAGGATGTGTAGCTCGCACTCAGAGGGTTCGACGAATTATGAACGAGTAGTACAAAGGAAAAGGGTCAACAGCATGATGGACGTTCACTCATTTTCACAAactcctctcctcttcctgaCATTCCTCCAGCAAAGGCCTTGTCTGAACAGTGAGCTACAGAGGGAGCTAGAgaatctgcactgtgaagtgaaACTCAGTGCAGCTCTGAGTGGATTAAATGACCACATAGCGTATCCCCAGTACCATGGCTTTGACTCCGACATTGAATGTGATGGCGAGCTGCAAACAGATGGACACTCATTTCACAGAGGTCTACTACATGATGTTCCTCAAGTTGATCTTGTATTACCAGtaccTGTCGAAGAAGCGAATGCAGTAAGGGAGGTGGCTGCTGAGCTCATTAGAATGGCAGATGAATTCAATCACAGCATTGTCTCTCAAGCCGCTGAGCATCTGACCAAGAAACTTTGCAATTCTTCTCCACAGTACTGGTGGACCTGCTTGTCTCAGGGTGTTGACAGCATACTCAAGGACATGCCTGGTGTGCACAATGAGCGAATGGTGATGGCACTCACCTTCTCCCTGGTGAAGGCAGTCTGTGAACGTGCACCTCGTCTGCTTCGTGAGCTCTGGAACACCTTCACTAGACCTCAGTGACTCATTTCTTTTACACAATGTGACTTACATTCTCAGGTTAccgttgtttgtttgtttttgttttcaactCTGATAAATGTGTACTTTTTCTTACTAGTAGTAGTTCATGTGTACTGTTTCTTAGTAGAAAAACAGTACctgattgttgttttttgtttgttttgtcggTCTGAACCTTTTTGGATGTTTCAATGTGTTATTGTTGTGGAAGTAAACACAAAAATGGATGAACTGTGA
>XM_026926948.2
TGAACTGCACTGGTACTTCAGGTGGCGATATAAACTTGTCGCGGGAGAGAGAGCTGTAAAGGATGTGTAGCTCGCACTCAGAGGGTTCGACGAATTATGAACGAGTcAAAGCAGCATCACGTTCGGACTAAAGAGTACAAAGGAAAAGGGTCAACAGCATGATGGACGTTCACTCATTTTCACAAactcctctcctcttcctgaCATTCCTCCAGCAAAGGCCTTGTCTGAACAGTGAGCTACAGAGGGAGCTAGAgaatctgcactgtgaagtgaaACTCAGTGCAGCTCTGAGTGGATTAAATGACCACATAGCGTATCCCCAGTACCATGGCTTTGACTCCGACATTGAATGTGATGGCGAGCTGCAAACAGATGGACACTCATTTCACAGAGGTCTACTACATGATGTTCCTCAAGTTGATCTTGTATTACCAGtaccTGTCGAAGAAGCGAATGCAGTAAGGGAGGTGGCTGCTGAGCTCATTAGAATGGCAGATGAATTCAATCACAGCATTGTCTCTCAAGCCGCTGAGCATCTGACCAAGAAACTTTGCAATTCTTCTCCACAGTACTGGTGGACCTGCTTGTCTCAGGGTGTTGACAGCATACTCAAGGACATGCCTGGTGTGCACAATGAGCGAATGGTGATGGCACTCACCTTCTCCCTGGTGAAGGCAGTCTGTGAACGTGCACCTCGTCTGCTTCGTGAGCTCTGGAACACCTTCACTAGACCTCAGTGACTCATTTCTTTTACACAATGTGACTTACATTCTCAGGTTAccgttgtttgtttgtttttgttttcaactCTGATAAATGTGTACTTTTTCTTACTAGTAGTAGTTCATGTGTACTGTTTCTTAGTAGAAAAACAGTACctgattgttgttttttgtttgttttgtcggTCTGAACCTTTTTGGATGTTTCAATGTGTTATTGTTGTGGAAGTAAACACAAAAATGGATGAACTGTGA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926947.2 True 983 mRNA 0.45 4 14355893 14364805
XM_026926948.2 False 980 mRNA 0.44 5 14355923 14364805

Neighbor

gene id symbol gene type direction distance location
wee2 wee2 coding upstream 973 14349167 ~ 14354920 (+)
agk agk coding upstream 20570 14325076 ~ 14335323 (+)
rapsn rapsn coding upstream 41076 14304663 ~ 14314817 (+)
kbtbd4 kbtbd4,LOC107596956,LOC107738697,LOC107686314,LOC107708223,LOC107672308 coding upstream 55229 14295711 ~ 14300664 (+)
tle3a LOC108264729,LOC108424090,LOC107596960,LOC107686309 coding upstream 170209 14164588 ~ 14185684 (+)
cftr cftr,LOC107738689,LOC107596947,LOC107583749 coding downstream 61727 14426532 ~ 14453076 (+)
pgpep1l pgpep1l coding downstream 164071 14528876 ~ 14533258 (+)
fam169b fam169b coding downstream 276155 14640960 ~ 14648967 (+)
arpin arpin coding downstream 289110 14653915 ~ 14657137 (+)
kmt5b kmt5b,LOC108264420 coding downstream 311739 14676544 ~ 14686478 (+)
G99276 ighmbp2 non-coding upstream 37239 14317597 ~ 14318654 (+)
G99261 NA non-coding upstream 93376 14261441 ~ 14262517 (+)
G99260 kif23 non-coding upstream 95151 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 365740 13989942 ~ 13990153 (+)
G98996 NA non-coding upstream 431580 13891424 ~ 13924313 (+)
G99362 NA non-coding downstream 265530 14630335 ~ 14631361 (+)
G99516 LOC108263939 non-coding downstream 360813 14725618 ~ 14725938 (+)
G99518 NA non-coding downstream 365179 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 661682 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 690462 15055267 ~ 15058771 (+)
skor1b skor1 other upstream 313441 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 399542 13932539 ~ 13956351 (+)
G98972 NA other upstream 566503 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 640127 13691607 ~ 13715766 (+)
nlrc5 nlrc5 other upstream 1497359 12837299 ~ 12858534 (+)
G99341 synm other downstream 155996 14520801 ~ 14524480 (+)
carmil2 carmil2,rltpr other downstream 935677 15300482 ~ 15346146 (+)
G100306 NA other downstream 1984652 16349457 ~ 16349787 (+)
G100345 NA other downstream 2235452 16600257 ~ 16601067 (+)
rgma NA other downstream 2292796 16657601 ~ 16680793 (+)

Expression


Co-expression Network