necab2 (necab2,LOC107672281,LOC106573751)


Basic Information

Item Value
gene id necab2
gene name necab2,LOC107672281,LOC106573751
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14885256 ~ 14969007 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926982.2
TTCATGTAATAAAACTATGTTCTGTTCAATTTGTAAAGTACACTCTGCGCTTTCATTGGATATATATTTAGTTAGTATCAGTTATTTGATTCAAGAGATATGAGAGCCAAACTGACCAAACCCGTGTTCAGTACAAAAACTGTACATAGCCTAAACACACAATTACTGCTGCAATAAGGTAGCTTACAGAGAGCAAAGAGAGATCTCCAGAAGAATAACCAAAATGATCTTTTTAGTGAAATTATGGGTTATGAGACCCACTCCTCACAAAGCAGCAGCTGTACGTTTTCagaggttagtgtgtgtgtgtgtgtgtgtgtcgtgagCTCTGATGTCAGAGGGGGGGAGGGCATCGCCCCCATAGCGCGCAGCATGAACGCAGCGCGGCAAAGAGGATGTGCGAGCAAGCAGCGCGCTACTGCAGGGACGGTGTCCACAAGCTGCTCCACAAGGACCAAGCCAAGCTGCGGGCGCAGGACAGCGGCGAGCAGACTAGATTCCCCGCGCAGAGCAGCGAGACCGCGACGGCGGCGCAGCCCGGGAACGGCGGCTCACAGCCCGGCGCCATAGACGGGCTTGTGCGCTGGATCGTCACCAAGATGAGCGACAACAAGAGCATCTCGACGCGCGAGTACGGCAAGGAGGAAGCGGCTGCGGCGCAAGAGCAATTCTTCGCTCCGGAGCCGCGCAAAGGCATTTCAGTCATCCTAGACATATTCCGGAGAGCTGATAaggatgATGACGGAAAGCTTTCCCTGGATGAGTTCCAGGCCTTCTTCTCCGATGGGACCCTGAATGAAGAAGAACTGGAGAATCTTTTCCACACCATTGATTCTGATAACACCAGTAATGTTGACACTAAGGAACTTTGTGACTACTTTGCCAAACACATGGGGGATTATGAAGGTGTGCTTGCATCCCTGGAGACACTCAACCTTTCCATCCTTAAAGCCATGGATTTCACCAAGAAGGTGTATGAAAGAGGAACTAATATTGAACAGTTTGTGACTCGCTTCTTGTTGAAGgaatcagccaatcaaatcCAGTCTTTGCTCAACTCTGTGGAGAGCGCAGTGGATGCTATTGATGAACAGCATTGCCCTCCGGGATCTTACCACAGTAAGACCAGTCCACGTGTTACCGAGAGGCACTATGAAGCTCCAGTGCCAGACTACCCACCCAATAACAGAGTTAGTGCCAAGGACAGCATGAGGAATCTGAATGTGGGCTCAGGACCTGTCGAGGTGAGGAAAGAAGGCCTGGAAATGCAGATCAACCGTCTGGCTGAGCTGATTGGACGCCTGGAGAACAAGACAGTCTGGTTTGACCTGCATCAGCGGCTAACCGACACTGATGGTACAGCTAGCGCATCCCTCTACCTGATTCGCCAAGAGATGAAGGTATCCCAGAAGCAGCTGGGAGAGTTCTGTGAGGCTCTGAAGCAGTATCTGAAGAATGTCTCTGCCCAGAGGGACTGTTtccaCGTGACTGCAGTGCGGCTTCCTGACGGCCTCTCTTTCGTTGTGTATGAGTTCTGGGATGGGGAGGAGGAATGGAAAAGACACCTCCAGAGTGCAGCCTGCAAGGCCTTCCAGCATGTGAAAGTGGACACACTGTGCCAGCCTGAGGTCATGTCCACTGTGGCTGTGCCAGCCGCTTGGTGCAGCCTTAGCCGAGACTGATTGGAGCCAGTGTGGACGGCCAGGGTGGAAGGCCTCATCTTACACCTGAATAGCCACGCGCCTCCTCTTTCCCTTCATATATACCCCTCTCCTTAAGCCTCTATATCTCCCATGATCTCTCTAAGCTCCCTCTATCTCTGCTcccctttctccctctcttttgtAACTACTGTTTACATGCTGTTGGTTTGACTGCAAAGAATGTGAAATATCATAGCAGTCCTCCTTAATGCTGTTAAGGTTGCTTTCAGGAATAGTATGTAATACTCTCTGGACTGTTTTATGGCTTCTGGGTGGatcaaaacagtgaaaatgaaagtaTACATATTAGTAATCTCTGGTTACAATAACAGAAATCTGAGTAATTTTAATCCCTGTTTGGTAAACTGCAAATGCACAAACATGCATTGCATTGCTGGTCCATTGCTCTGCTTCTCTGAGAACATCCAGCAGCTGAAGGTTTTAACATGTTATGGATGCTAATATCCGGCAGGGTGTAATGGCCAATTGATCTGCAGTTTTCAGCTAATAGTATTTAATCTACTTGGGCAAAGTGCACAACCAGAGACCCAGAGCAGCAGcatcaaataaatgaaagaattgtgtaataaatgtttACTTAAATGAAGTTTACAGATCTAGACAAAACCTGACATGCTGAGAGAAAATAGTCTTGAAATATTTTAGCTTAAAACAGAACTATATGGATTGTTTATTGATAGTAAATATATTGGTTGTGGAACATTTATACTGAGTGAAATGAACTCATGTCCTCTAACACTAATTCCCATAAATCTTTTGTTGTGCATTTCATAACCTAATTTAGTGAACAGTTCACTGTTTACAAAGAGACTTACACAACATGATATGAAAATGAACTGTTAATCCTTATGAATTATATAACAATCAAAATCTCACCACCTCGAACCAAACAGCCTCATTACTAATTACGGCATGTAGGCTTGATGTATTTGTGAATGGAAATTTGTCAAATTGCTTGTGGGCTCCTGTATGATGTGAACCGGTCCAAACGAAGGTGAAGCAAATGTCCACAATACTGTGGAACATTCCTTGCCGTTTCCTTCCCCATGAAACTTGGCTTCACTTTCCCCATCCCTCATGTGAGTGCATGTTCCAATGAATGTCCAGTAACTTATCTGCTGtagtatttagatatgctacTTTCAATGGATTTTGTGCATTTCTTAATTTTGTATTACTTAaattaggaacacctgaactgagaaatacataaacataaGAAATCAAGTATGAACAGGCACTTTTATGGCATTGTTTAACAAAACACTAATTCTTATACCTGTGTATGTTTCCGTAAAAACTAGCTTTCTCTTAAAATTGATTGTAGAGACTTATTGCAGGGATGCAAATATTATATTTGTCTTAACTTTGTTAACCTAGATTATGTAGTGATGTAATTCTATAGAATTAAAGGTCTAACGTGAATGAAAA
>XM_026926983.2
ATTCATGTAATAAAACTATGTTCTGTTCAATTTGTAAAGTACACTCTGCGCTTTCATTGGATATATATTTAGTTAGTATCAGTTATTTGATTCAAGAGATATGAGAGCCAAACTGACCAAACCCGTGTTCAGTACAAAAACTGTACATAGCCTAAACACACAATTACTGCTGCAATAAGGTAGCTTACAGAGAGCAAAGAGAGATCTCCAGAAGAATAACCAAAATGATCTTTTTAGTGAAATTATGGGTTATGAGACCCACTCCTCACAAAGCAGCAGCTGTACGTTTTCagaggttagtgtgtgtgtgtgtgtgtgtgtcgtgagCTCTGATGTCAGAGGGGGGGAGGGCATCGCCCCCATAGCGCGCAGCATGAACGCAGCGCGGCAAAGAGGATGTGCGAGCAAGCAGCGCGCTACTGCAGGGACGGTGTCCACAAGCTGCTCCACAAGGACCAAGCCAAGCTGCGGGCGCAGGACAGCGGCGAGCAGACTAGATTCCCCGCGCAGAGCAGCGAGACCGCGACGGCGGCGCAGCCCGGGAACGGCGGCTCACAGCCCGGCGCCATAGACGGGCTTGTGCGCTGGATCGTCACCAAGATGAGCGACAACAAGAGCATCTCGACGCGCGAGTACGGCAAGGAGGAAGCGGCTGCGGCGCAAGAGCAATTCTTCGCTCCGGAGCCGCGCAAAGGCATTTCAGTCATCCTAGACATATTCCGGAGAGCTGATAaggatgATGACGGAAAGCTTTCCCTGGATGAGTTCCAGGCCTTCTTCTCCGATGGGACCCTGAATGAAGAAGAACTGGAGAATCTTTTCCACACCATTGATTCTGATAACACCAGTAATGTTGACACTAAGGAACTTTGTGACTACTTTGCCAAACACATGGGGGATTATGAAGGTGTGCTTGCATCCCTGGAGACACTCAACCTTTCCATCCTTAAAGCCATGGATTTCACCAAGAAGGTGTATGAAAGAGGAACTAATATTGAACAGTTTGTGACTCGCTTCTTGTTGAAGgaatcagccaatcaaatcCAGTCTTTGCTCAACTCTGTGGAGAGCGCAGTGGATGCTATTGATGAACAGCATTGCCCTCCGGGATCTTACCACAGTAAGACCAGTCCACGTGTTACCGAGAGGCACTATGAAGCTCCAGTGCCAGACTACCCACCCAATAACAGAGTTAGTGCCAAGGACAGCATGAGGAATCTGAATGTGGGCTCAGGACCTGTCGAGGTGAGGAAAGAAGGCCTGGAAATGCAGATCAACCGTCTGGCTGAGCTGATTGGACGCCTGGAGAACAAGTCCCTCTACCTGATTCGCCAAGAGATGAAGGTATCCCAGAAGCAGCTGGGAGAGTTCTGTGAGGCTCTGAAGCAGTATCTGAAGAATGTCTCTGCCCAGAGGGACTGTTtccaCGTGACTGCAGTGCGGCTTCCTGACGGCCTCTCTTTCGTTGTGTATGAGTTCTGGGATGGGGAGGAGGAATGGAAAAGACACCTCCAGAGTGCAGCCTGCAAGGCCTTCCAGCATGTGAAAGTGGACACACTGTGCCAGCCTGAGGTCATGTCCACTGTGGCTGTGCCAGCCGCTTGGTGCAGCCTTAGCCGAGACTGATTGGAGCCAGTGTGGACGGCCAGGGTGGAAGGCCTCATCTTACACCTGAATAGCCACGCGCCTCCTCTTTCCCTTCATATATACCCCTCTCCTTAAGCCTCTATATCTCCCATGATCTCTCTAAGCTCCCTCTATCTCTGCTcccctttctccctctcttttgtAACTACTGTTTACATGCTGTTGGTTTGACTGCAAAGAATGTGAAATATCATAGCAGTCCTCCTTAATGCTGTTAAGGTTGCTTTCAGGAATAGTATGTAATACTCTCTGGACTGTTTTATGGCTTCTGGGTGGatcaaaacagtgaaaatgaaagtaTACATATTAGTAATCTCTGGTTACAATAACAGAAATCTGAGTAATTTTAATCCCTGTTTGGTAAACTGCAAATGCACAAACATGCATTGCATTGCTGGTCCATTGCTCTGCTTCTCTGAGAACATCCAGCAGCTGAAGGTTTTAACATGTTATGGATGCTAATATCCGGCAGGGTGTAATGGCCAATTGATCTGCAGTTTTCAGCTAATAGTATTTAATCTACTTGGGCAAAGTGCACAACCAGAGACCCAGAGCAGCAGcatcaaataaatgaaagaattgtgtaataaatgtttACTTAAATGAAGTTTACAGATCTAGACAAAACCTGACATGCTGAGAGAAAATAGTCTTGAAATATTTTAGCTTAAAACAGAACTATATGGATTGTTTATTGATAGTAAATATATTGGTTGTGGAACATTTATACTGAGTGAAATGAACTCATGTCCTCTAACACTAATTCCCATAAATCTTTTGTTGTGCATTTCATAACCTAATTTAGTGAACAGTTCACTGTTTACAAAGAGACTTACACAACATGATATGAAAATGAACTGTTAATCCTTATGAATTATATAACAATCAAAATCTCACCACCTCGAACCAAACAGCCTCATTACTAATTACGGCATGTAGGCTTGATGTATTTGTGAATGGAAATTTGTCAAATTGCTTGTGGGCTCCTGTATGATGTGAACCGGTCCAAACGAAGGTGAAGCAAATGTCCACAATACTGTGGAACATTCCTTGCCGTTTCCTTCCCCATGAAACTTGGCTTCACTTTCCCCATCCCTCATGTGAGTGCATGTTCCAATGAATGTCCAGTAACTTATCTGCTGtagtatttagatatgctacTTTCAATGGATTTTGTGCATTTCTTAATTTTGTATTACTTAaattaggaacacctgaactgagaaatacataaacataaGAAATCAAGTATGAACAGGCACTTTTATGGCATTGTTTAACAAAACACTAATTCTTATACCTGTGTATGTTTCCGTAAAAACTAGCTTTCTCTTAAAATTGATTGTAGAGACTTATTGCAGGGATGCAAATATTATATTTGTCTTAACTTTGTTAACCTAGATTATGTAGTGATGTAATTCTATAGAATTAAAGGTCTAACGTGAATGAAAA

Function

symbol description
necab2 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of amyloid precursor protein biosynthetic process. Predicted to be active in cytoplasm. Is expressed in brain; central nervous system; cranial ganglion; and neurons. Orthologous to human NECAB2 (N-terminal EF-hand calcium binding protein 2).

NR:

description
PREDICTED: N-terminal EF-hand calcium-binding protein 2-like isoform X2

GO: NA

KEGG:

id description
K23854 NECAB; N-terminal EF-hand calcium-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926982.2 True 3155 mRNA 0.44 13 14885257 14969007
XM_026926983.2 False 3099 mRNA 0.44 12 14885256 14969007

Neighbor

gene id symbol gene type direction distance location
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding upstream 7777 14784940 ~ 14877479 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368 coding upstream 175829 14695777 ~ 14709427 (+)
kmt5b kmt5b,LOC108264420 coding upstream 198778 14676544 ~ 14686478 (+)
arpin arpin coding upstream 228119 14653915 ~ 14657137 (+)
fam169b fam169b coding upstream 236289 14640960 ~ 14648967 (+)
ranbp10 ranbp10,LOC107583731 coding downstream 162258 15131265 ~ 15170919 (+)
ripor1 fam65a coding downstream 246043 15215050 ~ 15291450 (+)
ctcf ctcf,LOC107583725 coding downstream 322917 15291924 ~ 15299579 (+)
cfdp1 cfdp1,LOC105419833 coding downstream 389396 15358403 ~ 15388947 (+)
bcar1 bcar1 coding downstream 426096 15395103 ~ 15467776 (+)
G99518 NA non-coding upstream 155073 14729984 ~ 14730183 (+)
G99516 LOC108263939 non-coding upstream 159318 14725618 ~ 14725938 (+)
G99362 NA non-coding upstream 253895 14630335 ~ 14631361 (+)
G99276 ighmbp2 non-coding upstream 566602 14317597 ~ 14318654 (+)
G99261 NA non-coding upstream 622739 14261441 ~ 14262517 (+)
G99704 NA non-coding downstream 57480 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 86260 15055267 ~ 15058771 (+)
G99766 NA non-coding downstream 202325 15171332 ~ 15173435 (+)
G99786 NA non-coding downstream 207229 15176236 ~ 15180771 (+)
G99813 NA non-coding downstream 246384 15215391 ~ 15215716 (+)
G99341 synm other upstream 360776 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 842804 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 928905 13932539 ~ 13956351 (+)
G98972 NA other upstream 1095866 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 1169490 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 331475 15300482 ~ 15346146 (+)
G100306 NA other downstream 1380450 16349457 ~ 16349787 (+)
G100345 NA other downstream 1631250 16600257 ~ 16601067 (+)
rgma NA other downstream 1688594 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2431419 17400426 ~ 17443468 (+)

Expression


Co-expression Network