has3 (has3,LOC107740342,LOC107672271,LOC107707223)


Basic Information

Item Value
gene id has3
gene name has3,LOC107740342,LOC107672271,LOC107707223
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12482231 ~ 12489322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926986.2
AAGAGGCgggatggataaataaataagtgcataAAGGAGGCATTGAGAAGGGGTTCTGAGTCTTGTGGTAGCTGGCTGCACTGCAGAAAAGAGCAGCAAAAGGAGACAGAGTGGAGAAGTGAAGGTGAAGAtatgaggaggagaggagagcagTGTGCtttgcagagagagacagaaaaccaGGACAGTGTGATAACAGAAGGGGGTGCTAAGATTTAGGTTACACTACATTGCAGAGATGCACAAAGGAAAGCAGCTACCGCTGCAGCACAGCACTGACTAAGTAAGTGCGAGGGAAAGAGATAAAGCACCCTCACCATGCAGGGCGCTCTTGCCGCAGGCATGCTGGAGCCAGGACCAGGTGAGACACAACCAGGCTGTACCACCCTCAACCTACCAGCCTACTAGCACTGCCTTCTGAACTGAAAGGCCTTCATGCCTCGCGAGTGTGGAAGACGACAGGAGTTaaggaggagggagagaaagggagagggagGTGGAACCAGAGAAGGAGGAGGCCGGGGTGCTGTATTTTTGGATGAGGGAGCTCCTGAATTAAGAGCTGGTGAAATAAAGATGTAGTGTGAGCAAGAGGCAGAACAAGGAGCGTGCTGTGCTGCAGTGGAGAGGAGTGGAGTAGACGCcgggtgaacacacacacaccaccactcgCATATCCAGCAAGACTCTGCCTGGACAGAGAGAACCCACCGTTGCTGCCGCAGGGCTTGGAAGATGCCCTCTCGCTGTGGAACAGCGGTGCGGATCTTCATCACCACTCTATTTGCCGCTGTGGTGCTCTTTGCCATCCTGCTAGCCTATGTGACTGGCTACCAGTTCATCCACACTGAGCAGCACCACCTCTCCTTTGGCCTGTATGGCGCCATCCTGTCACTACATCTGCTGCTGCAGAGCCTCTTTGCTTACCTGGAACACCGGCGCATGCGAGCACCTTCACGGCCACAGCACCTGCGCTGCACTGTTGCCCTGTGCATCGCTGCTTATCAGGAGGACCCAGACTACCTACGCAAATGCCTGCGCAGCGTACGCCGCATCTCCTTCCCCAGTCTAAAAGTGGTGCTTGTTGTAGATGGTAACCGGCCCGAGGATGCCTACATGATGGACATCTTCCGGGAGGTAATGGGGGGAACAGAGCAGGCCGGATGCATGGTGTGGAAGGGGAACTACCATAGCAACGGGGCTGGAGGTGCAGGTACGGGCTCAGTGAATATGGACGAGGCTATTCGGGTGGCCAGGATAGTGCGCAGCTGCCGCTACTCCTGCATCATGCAGGAGTGGGGCGGGAAGAGGGAAGTGATGTATACGGCTTTCAAAGCACTGGGGAACTCTGTGGATTATGTGCAGGTATGTGATTCGGACACGGTTCTGGATCCAGCCTGCACAATTGAGCTGCTGAAGGTTCTGGAGGAGGACCCAAAGGTGGGAGGAGTAGGAGGAGATGTACAGATCCTGAACAAATATGATTCCTGGATATCTTTTCTGAGCAGTGTAAGGTACTGGATGGCCTTCAACGTGGAGCGTGCCTGTCAGTCGTACTTTGGCTGTGTTCAGTGTATCAGTGGGCCTCTGGGAATGTACCGCAACTCCCTCCTCCAGCAGTTCTTGGAACCCTGGTACCGCCAGACCTTCCTGGGCAGCAAATGTAGCTTTGGTGATGACCGGCACCTTACCAACCGAGTCCTCAGCTTCGGCTACAAGACTAAGTTTACTGCACGCTCACAATGCCAGACTGAGACACCTACTCACTACCTCCGCTGGCTCAACCAGCAGACCCGCTGGAGCAAGTCGTACTTCCGGGAGTGGCTCTACAATGCTCTCTGGTTCCACAAACACAGCCTCTGGATGACCTATGAGTCTGTGGTCACTGGattctttccctttttcctgGTGGCTACAGTAATCCACTTGTTCTACCGTGGACGGCTGTGGAACATCCTGCTATTTCTGCTAACAGTTCAGCTGGTGGGAATGGTGAAGGCCACCTATGCCTGTTTCCTGAGAGGCAGCCTGGTCATGATCTTTATGTCCCTCTATTCCCTGTTGTACATGTCTAGCCTCTTGCCAGCTAAGATCTTTGCCCTGTTGACTATCAATAAAGCAGGTTGGGGCACATCTGGGAGGAAGAAGATTGTAGTGAACTTAATTGGGGCTGTACCTGTAACTGTTTGGGCACTTCTTTTGCTTGGTGGAGTAGCTTATACCATTTACTGTGAGACGCAGGAACCTTTTAGTGAAACTGAGAAGGTTCTGCTCATTAGTGGGGGTATCCTCTATGCCTGCTACTGGCTTATACTTCTGGTGCTCTACTTGGCTATTGTGGCTAAGCGCTGTAACAAGAGGGAGGAGCAGTACCACCTGCCCTATGCTGAGGCCTAGAATGCCTTAATGATGTTGCTGGATAAACTTTATGGGACTGGTTTGAATCAGTCTTCTACCTCTCTGGTGCTAAGCTCAGTTTCATACTGGCAAATGATGCATACTCACTTCATTTGCAAGACTATGGAGCTTTCCCCACCAGTTGAGATATATTACTGGCCTTCCAAGAAGGTACAATTGAGCTGTGCAGTATTTTGCTTCTTAAATATAAAGCATAGATCAGAGGAAATGTTCAATCATGGTGCTGAGCTCACACCATCATACATGAATAGAGTGGTGTGGGTCCTTGGACTCAAATATGAATCACACACTGTGGTGAAACGTGTACCGTTCCTGGGAAGAACCCCGTATTAGACACTGCAAACTTAAATCGAAAATTATCTGTCGtgattttcatgaaattttacataATTTGCCTTAGTTTTAACAGTGGTAAATGCAGTATTAATCAATATTTTGTTGGGGTTTGTACTATACCAAAAGTTtctgttatttcattttattttatttcattccttAAACTTCTTCAGGAAACATTCTTTTACACCGTACTGGGaacaaccaaagagttttttaGGGTTTATCTGCTTATACTTAATGGTACACCACAAACTTTTTCATATTTGCTGTTACTGTAAATGCAGCTGCAAATTGCAACTAAACACACCAACCATATTCTCCTTAAGAAAAAATGCATCAAGCTTGACTGTGCAACCTAAAACTTGAATGTGCAAAGATGAAACAAGTTGCTCTTTGTTTACAAGTTAATAgtaatgtgacattttattagCTAGAATTCCTTTTATagattattctattttttttctttatatagaTAAAAGATTAGAAAAGTACTGCACATTGACTTCATGTTAACCATGTAATTTTTCATACCAGCAAAATGTTAACCCTACAGACACTCAAAAGTAATTATGTTTACACACAATTcagttaattaaatgttttgtaaCACTTGTAGAATTACAATCTGTTAAAAATGCAAGGCTTTGGATTTATGTTTTTGCCCTCTCTATGGCTAGAGCCTGCACAAATACCAAATTAGCAGACAGGATGTGTTGTAGAGTGTTTAATCACGTTTAAACACTGATTTACTGTTCCAAATCAGCCCCTTTTGCTCTCCCAGTGCCAGCGTATGGATTTCCTGATTTATTACATAAGcacaacacactcagaggagGAGTAATCTCTGGCAATTACTGTGTAGTGTGTTATGGTGTACATTAAAGAATTTCAGCAGAGAAATTATGAATTCATGAAATGGCTATCTGCACAAGTGCTTCTCATAAAGACAAGTTCCTCGGTTAAGGCATTCTAATATCCAGCGCAATGGTTTTATTCTTGAGCAATGGACAGCCATCATGCATATGCTGTGTTCACTTTTCATGTGCACATGAGGTTTAGTTGTAAAATGTGTAGAGCAGAAATTAAGTAAATAACTAAAACTTTGATATGCTTTTGAGAACAGTTTTCCAATCATTGCTTCAACAGAATACTATAGAGAGGGAAAATATTAGGCATTATAGAGTTTATCAACAAAATTAAAGCTTGCAGGACATGTTATAATGATGCGGCAGGAATAGACAAATCACTAGCCTG

Function

symbol description
has3 Predicted to enable hyaluronan synthase activity. Predicted to be involved in extracellular matrix assembly; extracellular polysaccharide biosynthetic process; and hyaluronan biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in hypochord; median fin fold; nervous system; otic vesicle; and pectoral fin. Orthologous to human HAS3 (hyaluronan synthase 3).

NR:

description
PREDICTED: hyaluronan synthase 3

GO:

id name namespace
GO:0030213 hyaluronan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0050501 hyaluronan synthase activity molecular_function

KEGG:

id description
K00752 hasA; hyaluronan synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926986.2 True 4014 mRNA 0.46 4 12482231 12489322

Neighbor

gene id symbol gene type direction distance location
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding downstream 5333 12466146 ~ 12476898 (-)
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding downstream 18990 12458515 ~ 12463241 (-)
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding downstream 86569 12388873 ~ 12395662 (-)
swap70b swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307 coding downstream 96878 12363559 ~ 12385353 (-)
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding downstream 178534 12282297 ~ 12303697 (-)
tango6 tango6 coding upstream 2073 12491395 ~ 12518992 (-)
il17c il17c coding upstream 30223 12519545 ~ 12522723 (-)
zc3h18 zc3h18,LOC106573693 coding upstream 34937 12524259 ~ 12552261 (-)
zfpm1 zfpm1 coding upstream 118551 12607873 ~ 12680438 (-)
foxl1 foxl1,LOC102233982 coding upstream 232424 12721746 ~ 12724527 (-)
G98383 NA non-coding downstream 3954 12477903 ~ 12478277 (-)
G98343 NA non-coding downstream 206002 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 206820 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 785566 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 789152 11690997 ~ 11693079 (-)
G98551 NA non-coding upstream 222772 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 239122 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 249627 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 274577 12763899 ~ 12774207 (-)
G98588 NA non-coding upstream 313476 12802798 ~ 12803608 (-)
akip1 LOC108264820 other downstream 58253 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 76950 12396507 ~ 12405281 (-)
admb NA other downstream 136779 12311822 ~ 12345452 (-)
sspn sspn other downstream 604027 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 712245 11752525 ~ 11769986 (-)
G98770 NA other upstream 556501 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1061358 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1846614 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2857844 15347166 ~ 15357563 (-)
G101178 NA other upstream 5698125 18187447 ~ 18196806 (-)

Expression


Co-expression Network