LOC113534316 (LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720)


Basic Information

Item Value
gene id LOC113534316
gene name LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9217244 ~ 9220204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927009.2
GTGTCGTGTGGAAGGCCCTTAGCAGGGTCGGCTGCTGTGACCGAAATCTTCAACTGCAGAAGATGGTGTCCTTGGTCGGTCGTTCTGGGTTTTTGTACCCTTACTTACACACAACTAACTTTATCATATCCAGACCCCTGACAGCTGTAGTTCCTGCAGCTGTAAACTCGGGAGATGCCTTGGTGAATCAGAGAAAATCTGCCAGAAGTCAGTCTGTCTCAGGTCTTCTGCATGGACATTTTGGAGTGCGTTTTGCACACACTGATATCAGGATCCCTGACTTCTCTGACTATCGTCGTCCTGAGGTACAGGATCCTAAAGCGTCCTCACAAGAGAGCAGCGAGGCTCGCAGGGCTTTCTCCTACCTGATCACTGGCTCCACTGCTGTGGTGGGGGTTTACGCCGCCAAGACAGCGGTTACTCAGTTCATCTCTTCCATGAGCGCCTCTGCAGATGTCCTGGCCTTGTCCAAAATTGAGATCAAGCTGAGCGATATTCCAGAGGGGAAGAACATGACATTCAAATGGAGAGGAAAGCCCCTGTTTGTTCGCCACAGAACCGAGAAGGAGATCGCAACTGAGGCTAACGTGGATCTGTCAGAGCTCCGCGACCCACAGCACGACACAGACCGAGTCGTCAAACCTTCCTGGGTCATCGTCATTGGGGTGTGCACTCATCTTGGCTGCGTTCCTATCGCAAACGCTGGGGAGTACGGCGGTTACTACTGCCCCTGTCACGGCTCACATTACGACGCCTCTGGGAGGATCAGGAAGGGACCTGCACCCCTCAACTTAGAGGTGCCGTACTATGAGTTTCCTGATGAAGATACAGTGGTCGTTGGTTAGATGTGGACGTTTCCTAATTGCTAAATATTAGTATGTGTGTCTGGCCAaactaataaatattttaaaccacTCAAA
>XM_026927010.2
CGGTGTCGTGTGGAAGGCCCTTAGCAGGGTCGGCTGCTGTGACCGAAATCTTCAACTGCAGAAGATGGTGTCCTTGGTCGGTCGTTCTGGGTTTTTGTACCCTTACTTACACACAACTAACTTTATCATATCCAGACCCCTGACAGCTGTAGTTCCTGCAGCTGTAAACTCGGGAGATGCCTTGGTGAATCAGAGAAAATCTGCCAGAAGACATTTTGGAGTGCGTTTTGCACACACTGATATCAGGATCCCTGACTTCTCTGACTATCGTCGTCCTGAGGTACAGGATCCTAAAGCGTCCTCACAAGAGAGCAGCGAGGCTCGCAGGGCTTTCTCCTACCTGATCACTGGCTCCACTGCTGTGGTGGGGGTTTACGCCGCCAAGACAGCGGTTACTCAGTTCATCTCTTCCATGAGCGCCTCTGCAGATGTCCTGGCCTTGTCCAAAATTGAGATCAAGCTGAGCGATATTCCAGAGGGGAAGAACATGACATTCAAATGGAGAGGAAAGCCCCTGTTTGTTCGCCACAGAACCGAGAAGGAGATCGCAACTGAGGCTAACGTGGATCTGTCAGAGCTCCGCGACCCACAGCACGACACAGACCGAGTCGTCAAACCTTCCTGGGTCATCGTCATTGGGGTGTGCACTCATCTTGGCTGCGTTCCTATCGCAAACGCTGGGGAGTACGGCGGTTACTACTGCCCCTGTCACGGCTCACATTACGACGCCTCTGGGAGGATCAGGAAGGGACCTGCACCCCTCAACTTAGAGGTGCCGTACTATGAGTTTCCTGATGAAGATACAGTGGTCGTTGGTTAGATGTGGACGTTTCCTAATTGCTAAATATTAGTATGTGTGTCTGGCCAaactaataaatattttaaaccacTCAAA

Function

NR:

description
PREDICTED: cytochrome b-c1 complex subunit Rieske, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008121 ubiquinol-cytochrome-c reductase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors molecular_function

KEGG:

id description
K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927009.2 True 920 mRNA 0.51 2 9217244 9220202
XM_026927010.2 False 895 mRNA 0.51 2 9217244 9220204

Neighbor

gene id symbol gene type direction distance location
LOC113534306 LOC108264223 coding downstream 6314 9205345 ~ 9210930 (-)
tat tat,LOC106573680 coding downstream 15427 9193351 ~ 9201817 (-)
zgc:56622 LOC108264227,LOC108411019 coding downstream 26172 9186380 ~ 9191072 (-)
meak7 tldc1,LOC104945682 coding downstream 48970 9162522 ~ 9168274 (-)
plcg2 plcg2 coding downstream 55414 9134196 ~ 9161830 (-)
tbxas1 tbxas1 coding upstream 129687 9349891 ~ 9414387 (-)
fgd4a fgd4 coding upstream 404859 9625063 ~ 9692085 (-)
bicd1a bicd1,LOC107722484 coding upstream 473873 9694077 ~ 9732778 (-)
LOC113534539 LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 coding upstream 777609 9997813 ~ 10018683 (-)
mical3a mical3a,LOC108264267,LOC108414616,LOC107673136,LOC107559327 coding upstream 1075647 10295851 ~ 10398875 (-)
G96421 NA non-coding downstream 130573 9084327 ~ 9086671 (-)
G96220 NA non-coding downstream 454648 8754558 ~ 8762596 (-)
G96170 NA non-coding downstream 587121 8629900 ~ 8630123 (-)
G96166 NA non-coding downstream 604230 8612815 ~ 8613014 (-)
LOC113534629 NA non-coding downstream 872586 8326831 ~ 8344658 (-)
G96484 NA non-coding upstream 106477 9326681 ~ 9338784 (-)
G96679 NA non-coding upstream 196818 9417022 ~ 9417414 (-)
G96677 hipk2 non-coding upstream 197382 9417586 ~ 9503941 (-)
G96840 NA non-coding upstream 599183 9819387 ~ 9884455 (-)
G97054 NA non-coding upstream 851349 10071553 ~ 10095358 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other downstream 1429 9174655 ~ 9215815 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 738907 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 1522817 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 2059756 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 2935714 6197243 ~ 6281530 (-)
LOC113534661 NA other upstream 530678 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 602029 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 1046774 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 1306906 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 1952483 11172687 ~ 11179608 (-)

Expression


Co-expression Network