chka (chka,LOC108424340,LOC107738676,LOC107726368)


Basic Information

Item Value
gene id chka
gene name chka,LOC108424340,LOC107738676,LOC107726368
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14695777 ~ 14709427 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927058.2
CCACTAAAGCGCCATACGCACAGCCATTCTTCTGCACGTAGCCAGCCAGTGAGCAGACTCTCACCCACAGCAGACGACTTCGTTCAATTTGGCAGTTGCAGAATCTTCTTGTTTCCCTTAACCATCACACGAATTGATCTCTTGTGTCAAATAAATTCGGTCTTAtctacattccagaaagatgaAGACTAAGTTCATCAACGGGGTGTCCTCCTCCCCCTCCATGTCTCTGGGTTTACTGGTGACCGAGAACGCGCTTCAGGTCCAGCCTGATACCGAGCCAGCCTGCAAAGCTCTGCGCGCAGAGGAACCCGACCATGAGACCAAGCACAAGGCGTATCTGTGGTGCAAAGAGTTTCTGCACGGAGCCTGGAAGTCCATTGATGAGGAGGATTTTCATATAACTGTGATCAGAGGGGGTCTCAGCAACAAGCTGTTCCTCTGCGCATTACCCGAGGAGCAGCAGAGCGTTGGGGACGAGCCAAGAAACGTGTTGCTTCGCCTCTATGGAGCCATACTGCAGATGTCCTGTAATAAAGGAGACTCTGGACAGTCAAACACGGAAAATCACTTTCAAGGAGCTGAAGCTATGGTCCTGGAAAGTGTGATGTTTGCCATCCTGGCAGAGAGGCAGCTTGGGCCTAAGCTCTATGGCATCTTTCCTCAGGGGAGACTAGAACAGTATGTCCCGAGCCGCAAACTTGCCACAGAGGAGCTGGGAATTCCCAGTTTATCTGCTGAGATTGCAGAGAAAATCGCTAAGTTCCACAAGATGAGGATGCCTTTTAACAAAGAGCCCAAATGGCTGTTTGGCACAATGGAAAAATACATGACTCAAGTGCAAAGGGTGACCTTCACCAGAGAGATCCACCTCCATAAGTTTAACCTTCTTATGAGCTACAACCTGCCTCAGGAGATGGAGAACCTCAgGTGTCTCCTGGAATCCACCCCATCTCCTGTTGTTTTCTGCCACAATGATTTACAAGAAGGAAACATCCTTCTTCTAAGTGGCCGGGAGAACATGGAAAAGCAGAAACTTATGCTGATTGACTTTGAGTACAGCAGCTACAACTACAGAGGATTTGACATAGGAAACTTCTTCTGTGAATGGATGTACGACTACAACTGTGACACACCTCCGTTCTTCAGCAGCAATACCAAGAATTATCCAACCAAAGTTCAGCAGATGCATTTCTTTGAAAGCTATCTGTCTGAATATGACCCTGGAGTGGCAAACCTGAGCAAGGAAGCCCAGCTAAAAATCAAAGAGGACATGTTGGTGGAGGTTAACAGGTTTGCCCTCGCTTCACACTTCTTCTGGGGCCTGTGGTCCATAATTCAGGCGAGACTTTCCACTATCGAGTTTGGCTACCTGGACTATGCCATAGCCAGATTTGACACATACTTTGAGCTCAAAAAGGAGCTAGGAGTTTAAATGCTGTGTTATTACACAAGGGACAGAGAAGCTAAGAAGAGTGAAGTGGAGACTGCAGACCTGGCTTTTGAATCCAGTAGAAGCAGATGCTTTGCAACTGTGATGATTATATGGTGCCGCATGGTCCAAAATCGACAACACTCACATTTACTTGGCCtaatgtgttcagtagtgtaccATGCTAGTTCTCAGAGTTTATCTCAGTGTTTCAGCTCCAAAAGCTCAACACATTTTCGTGATGCTGAAAGCTTCTGGGCagcttaaaaaaacacaaacaaacaaaaaaagcatacaTGTAAAATTACCATTACAGAGTCCTAAGTgggcttttgaaaaaaaatctagaataAACTGCGCCACTAACATGTAGAAGCGAGTCTCTGCCAGATTTGGTGGAGACACTTGACCCCAAAGAGCCACATTTGTCTGCTTTTATTATGGCAGGTAATCTCTGCTGCATTATCTTTACAACCTGTGCTaggaaatgtgaaaaagtgAGGTTCATAAGCGTGGACCTTGAGCTATAGTGCGATACAACAGACCAAACTCATGTGGCACTGTGAATTTTCAGTGCTGTGAGACATGTATACACTCATCCAATTTTTTTAGTGAAGCCTTATGATCctttttgtggtttgtttacTTCTCTTTCTCTACTTGAACAACTActagactgactgtttttttttttttaacggtaATAAGTCAAGAAGGCAATAGTGTGGAAATCAGATGCCTTATGGGACCTGGCCACCTGTGTACACTTGAGAAAATGACATGATGCATATGATCTGATTTTAAATTTTGAACTGGAGTCAAAAAAGTTAGTTCTGTTTGCTTACTGGCTCTGTTTCACGTCGTGGATACAGTGGTCACTATCAACTTGTATTACATACTGACAATCCTTCCctttttttcataattagcACATGTACTAATTTGTTTCCCACGTgagataaattttttttttgccatgtaaTAACATTTGTTATTTCTctgaatttattatatttcattatcaTTTGCCTGGTATATAGGCTAAACTGTGAGaatctttttaaatcttttacaATCTTAGCTACTATTTTTGAGTATCACATTCGTTATATTTAGCTGCAGATGTATATTATAGTGATGGTATATTAATCTGTTAACATTACTGTGTCACTCTATATGAGTCATGTAAACAGTATTTCTAAGTggaacttttcttttttttcctttaatggaagttgtttttttcttaataagaAAGCTGTGTTTTGTGAAGGGATTTAAATATTGCTAATTACTTTTTCTTCTACAtcttcagtgttcttcagtgtgACATGTAagtgactttgtttagttttacACCCTTTTGAAGCTGTAAGTAATTCATACACATTCTGGCAATTTAATCACAAATTCCAGTATAATAACAAGGAGCCAATGGAAAACCAAGAGTTGTATATGAGTGAATGTAATGACGTATAAATCATATACTGCAATTTCAGACATTATTTTGTCCCTGACTTCGTCATGTATGTACAATACTACAGGACAATTCAAAACCAATCTACAGTGTGCTCTACAGTTTGCTCTTTTTGTATTGTaataaaaggagaaagaaggTTTTGATTTGACATTAATTAACCTTGTTCTGTAGAAAATGCTTTGCTcatgaacaataaataaaagtatgtaAAACTA

Function

symbol description
chka Is expressed in swim bladder. Orthologous to human CHKA (choline kinase alpha).

NR:

description
choline kinase alpha-like isoform X1

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K14156 CHK; choline/ethanolamine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927058.2 True 3127 mRNA 0.41 12 14695777 14709427

Neighbor

gene id symbol gene type direction distance location
kmt5b kmt5b,LOC108264420 coding upstream 9299 14676544 ~ 14686478 (+)
arpin arpin coding upstream 38640 14653915 ~ 14657137 (+)
fam169b fam169b coding upstream 46810 14640960 ~ 14648967 (+)
pgpep1l pgpep1l coding upstream 162519 14528876 ~ 14533258 (+)
cftr cftr,LOC107738689,LOC107596947,LOC107583749 coding upstream 242701 14426532 ~ 14453076 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding downstream 75513 14784940 ~ 14877479 (+)
necab2 necab2,LOC107672281,LOC106573751 coding downstream 175829 14885256 ~ 14969007 (+)
ranbp10 ranbp10,LOC107583731 coding downstream 421838 15131265 ~ 15170919 (+)
ripor1 fam65a coding downstream 505623 15215050 ~ 15291450 (+)
ctcf ctcf,LOC107583725 coding downstream 582497 15291924 ~ 15299579 (+)
G99362 NA non-coding upstream 64416 14630335 ~ 14631361 (+)
G99276 ighmbp2 non-coding upstream 377123 14317597 ~ 14318654 (+)
G99261 NA non-coding upstream 433260 14261441 ~ 14262517 (+)
G99260 kif23 non-coding upstream 435035 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 705624 13989942 ~ 13990153 (+)
G99516 LOC108263939 non-coding downstream 16191 14725618 ~ 14725938 (+)
G99518 NA non-coding downstream 20557 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 317060 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 345840 15055267 ~ 15058771 (+)
G99766 NA non-coding downstream 461905 15171332 ~ 15173435 (+)
G99341 synm other upstream 171297 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 653325 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 739426 13932539 ~ 13956351 (+)
G98972 NA other upstream 906387 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 980011 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 591055 15300482 ~ 15346146 (+)
G100306 NA other downstream 1640030 16349457 ~ 16349787 (+)
G100345 NA other downstream 1890830 16600257 ~ 16601067 (+)
rgma NA other downstream 1948174 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2690999 17400426 ~ 17443468 (+)

Expression


Co-expression Network