swap70b (swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307)


Basic Information

Item Value
gene id swap70b
gene name swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12363559 ~ 12385353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927106.2
GCTTGTGTTCAGAGCAGAGCAGAAGTGCGTCAAGCTTCAGCCGGGCTGTACCTCTCGAAATGGGACTAAGAGACGAACTTCTAAAGTCGATATGGCATGCCTTCACAGCGCTGGATTTGGACAAAAGTGGGAAAGTGTCAAAGTCTCAGTTAAAGGTGCTATCCCATAGCCTGTGCACTGTGATGAAGATTCCTCATGATCCAGTGGCTCTGGAGGAGCACttcagagatgatgatgagggacCGGTCTCCAATCAGGGATACATGCCCTACCTGAACAAATTCATCCTGGACAAGGTACAGGACAACTTTGATCGAGTGGACtttaacaggatgtgctggacgCTGTGTGCCAGGAAAAACCTCAACAGAAATCACTTACTCATCTCTGATGATGACGCATTTAAGATCTGGTGCATATTTAACTTTCTCTCTGAGGACCGGTACCCCTTGGTCATAGTCACAGAGGAGATTGAGTATTTTCTGCGTAAGTTGACAGAGGCGATGGGAGGTAGCTGGATCGAGGAGAAGTTTGAGGACTACAAGATGCAGCTGAGCTTCAAACAGCAGTGCCTGAATGTGTGGGAGCTAATCGAGCTGGTCGGCATGGGCCACTTCAGCAAAGGGATGGACCGCCAGACCCTCTCCATGGGCATCAGTGAGGTCTTCCAGGAGCTCATATTGGATGTGTTGAAACAGGGTTATATGATGAAAAAAGGCCACAAACGGAAAAACTGGACTGAGCGGTGGTTTCTGCTCCGCCCCAATTCAATCGCATACTATGTGAGTGAAGATCTagcagagaaaaaaggagacatACTGCTGGATGGAAACTGCTGTGTTGAGTCTTTACCAGATAAGGAGGGGAAGAAATGCCTTTTCTTTGTCAAGTGCTCAGACAAGAGTTATGAGATCAGTGCCTCtgataaaaagaagaaacaggaaTGGATCCAAGCCATACAGACATGTATCTCTCTGCTGAAGATAGGCCGTCCAGCACCACATCATGAAGCTCGGCAAAAGCGGCGAGAGCTGCGGCAGAAGCAGCAAGCTGAGCAGGAACAGTTGGAGCTTAGGATGAAAGAACTCCAGACAGCCAACGAGAACAAGCAGAGAGAGCTTGAGGCCATGAGAAAGAAACTGGAGGAGGCAGCAGCCACGGCAGCTGAGGAGGAACATAGGCGTCTGCAGACCCAGAACCAATTGGAGGACCTTTACAGAGCTGAAatggagaaggagaaaatgGTGAGGCTGCAGATGGAGGAGCAGGTGGCGCAAAAGTCCAGTGAGCTAGAGCAGTATCTGCAGCGTGTCCGGGAGCTGGAGGATATGTACCATCGTCTGGAGGAAGCACTGGAGGAAGAGAGGCAGGCCAGGCAGGATGAAGAGACTGTTCGCAAACTGCAGGCCAGATTGCTGGAGGAGGAGGCAGCAAAGCGCTCAGAGCTGGAGCAGATCCACCTGCAGCAACAGCAGGCTATCTCTCAGACGAAGGCCGAGAAGgaggagctggagaaagcacgacTGGAAAAGGAGAGTGCGCTGGAGGATGCCATGCAGCAGCTACAGAGGctggagacagagaggcagagcgCACTGGAGCAGTATGAGGAAGTAATGAAGAAACTGGAGGATGCTGCTAATAACACAAAAAGCTGGAAAGACAAGGTGGCCCAACATGAGGGACTCATACGTCTTATACAGCCAGgcCCAAAAGGCCCTCAGAAGATCACCAACTGGGGTCCTGCAGCCTTCACAGAAACAGAACTGAGTCTGAGAGAGAAGGACTGGCAGGAGAAGAAAAACAGGCCTGCTCAGACTCAGTAAGGCATTGCTGTTCTGCCTGCGTTACTGCAAAGCATTCTTAACCACTACTGAATGGGGAAACACTGGCCAAGTGGGCTGCGTTCCACTCAAACGGACCTTTGAAACACCTTGTGTGACTGTGTAGTAGACTCTAATTTCGCTGTATCTGTTATCACTCCAGTCATACTGTAACATTGCAGGGCATTGTGTCACTTTTGTGGCTCTTTTGAAGGGATTTATATTCTTGTTTTTATAAAGTACAATATTCTCCATGGATATGTTGATTTAGTTGTATTTTCTGCCAAAGTGGTGACAGATTttgcacagaaataaataaaatgtcaaagatTGTTCAatttaaagtggaaaaaactGTCATTCACCAAGTAATgtcaaaaacatctaaaaaaatatCTAACCTGTAACCTTATCAGTTTTTGTGACCTAACTTAGTATTGTTAAAATGGAATTGGGGCACCATGAACAGCAAAATGCATTGAAGGGATGAATGAAGTACTGTGtagaaatatgtttttgtactttgtgtagaatggcattttttttaacaacactgacacaaacaaaatacattatAGATTCAGTTTTGTTTATGGAGACATGGCTACAGTATTAAGCTGTTATAACACCAGAGTAGTTCTATAATTGAAAGTTTTACAAGATATCAATGTCTttgaattttctttttgtcaCAAACAGTATTCTGCATGTTTGTATCAAACTAACATAAAGTTCAGACTTgagaccttttttttctttatgaagatttattgaaaattagaataaaatgtTACGTTATGTTTA

Function

symbol description
swap70b Predicted to enable calcium ion binding activity. Acts upstream of or within convergent extension; positive regulation of oligodendrocyte differentiation; and regulation of exit from mitosis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; pectoral fin; and vasculature. Orthologous to human SWAP70 (switching B cell complex subunit SWAP70).

NR:

description
switch-associated protein 70

GO:

id name namespace
GO:0007096 regulation of exit from mitosis biological_process
GO:0048714 positive regulation of oligodendrocyte differentiation biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20072 SWAP70; switch-associated protein 70

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927106.2 True 2627 mRNA 0.45 12 12363559 12385353

Neighbor

gene id symbol gene type direction distance location
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding downstream 59862 12282297 ~ 12303697 (-)
LOC113534448 NA coding downstream 94442 12267333 ~ 12269117 (-)
mgat4c mgat4c,LOC107740326,LOC107553950 coding downstream 172198 12067030 ~ 12191361 (-)
rassf9 rassf9 coding downstream 315808 12035974 ~ 12047751 (-)
slc6a15 slc6a15,LOC107553966,LOC107740320,LOC107672330,LOC106573109 coding downstream 437302 11905608 ~ 11926257 (-)
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding upstream 3520 12388873 ~ 12395662 (-)
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding upstream 73162 12458515 ~ 12463241 (-)
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding upstream 80793 12466146 ~ 12476898 (-)
has3 has3,LOC107740342,LOC107672271,LOC107707223 coding upstream 96878 12482231 ~ 12489322 (-)
tango6 tango6 coding upstream 106042 12491395 ~ 12518992 (-)
G98343 NA non-coding downstream 87330 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 88148 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 666894 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 670480 11690997 ~ 11693079 (-)
G97831 NA non-coding downstream 886445 11396116 ~ 11477114 (-)
G98383 NA non-coding upstream 92550 12477903 ~ 12478277 (-)
G98551 NA non-coding upstream 326741 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 343091 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 353596 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 378546 12763899 ~ 12774207 (-)
admb NA other downstream 18107 12311822 ~ 12345452 (-)
sspn sspn other downstream 485355 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 593573 11752525 ~ 11769986 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other downstream 752595 11586057 ~ 11610964 (-)
pdf pdf,spata2l other downstream 1183951 11172687 ~ 11179608 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 11154 12396507 ~ 12405281 (-)
akip1 LOC108264820 other upstream 35084 12420437 ~ 12423978 (-)
G98770 NA other upstream 660470 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1165327 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1950583 14335936 ~ 14347008 (-)

Expression


Co-expression Network