aars1 (aars,LOC107686288,LOC107738729)


Basic Information

Item Value
gene id aars1
gene name aars,LOC107686288,LOC107738729
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13475531 ~ 13491284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927144.2
GTTATTGGGAGCGTTTTGGAGTGTTAAGGTGTCGTGATCCACATGGCTCTCCATCTCGCTTTTTTCTGTGCCAAAGCATTTACATGCTGGCAGTCCTCTTCGAACAACCCATCCAGCATGGACACTTCACTGACTGCCGCTCAGATCCGTGAGAAGTTCATTAACTTCTTCCGTCGCTACGAGCATCAGTATGTGCACTCGTCCTCCACCATTCCCCTGGATGACCCAACCCTTCTCTTTGCCAATGCTGGCATGAACCAGTTCAAACCTATCTTCCTAAACACGATCGACCCATCCCACCCCATGGCCAGACTGAAGCGTGCTGCCAACACCCAGAAGTGCATCCGTGCTGGTGGTAAACATAACGACCTGGATGACGTGGGCAAAGATGTGTACCACCACACCTTCTTTGAGATGTTGGGCTCCTGGTCCTTTGGAGATTACTTTAAACAATTGGCCTGTAAGATGGCTCTGGAGTTGTTGACCCAGGAGTTCGGGATCCCTCTCGAGCGCTTGTATTTCACCTACTTTGGAGGACATGCTGAAGCAGGCCTTGATTGTGACAATGAGTGCAAGCAGATCTGGCTTGACCTAGGGGTGGCAGAGGAGCGTATCCTGCCAGGTAATATGAAAGACAATTTCTGGGAGATGGGAGACACTGGTCCCTGTGGGCCCTGCAGTGAGATCCACTACGACCGCATTGGAGGCAGAGACGCTGCACACCTCGTCAACATGGACGACCCTAATGTGCTGGAGATCTGGAATCTGGTGTTTATCCAGTTCAACAGAGAGTCCGAGACAGAGCTGAAGCCTCTTCCTAAGAAGAGCATTGATACTGGAATGGGGCTGGAGCGACTGGTCTCTGTTCTGCAGAACAAGATGTCAAACTATGACACAGACCTCTTCGTTCCTTACTTTGAAGCTATCCAGAAGGGCACAGGAGCCAGGCCTTACACTGGCAAAGTTGGATCAGAAGACCAAGATGGCATTGACATGGCATATCGAGTTCTCGCTGACCACGCCCGCACCATCACTATTGCTCTGTCTGACGGTGGTCGACCTGACAACACTGGAAGGGGatacgTGTTGAGAAGGATCCTGCGACGTGCTGTTCGGTACGCTCATGAGAAGCTGGGTGCTCAGAAGGGCTTCTTCGCCTCTCTGGTGGACGTGGTGGTGCAGTCACTGGGACATGCTTTCCCTGAGCTGAAGAAAGACCCAGACACAGTGAAGGATGTCATTAATGAAGAGGAAATGCAGTTTCTTAAGACTCTCAGCAGAGGGCGACGCATCCTGGACAGGAAGATCCAAAACCTTGGAGACAGCAAGACTCTTCCAGGGGACACTGCCTGGCTGCTGTACGATACCTACGGCTTCCCTCTGGATCTGACTGTCCTCATTGCAGAGGAGAAAGGCATGGGAGTGGACCTAGCTGCGtttgaggaggagaagaaagctGCACAGCTGAAGTCCCAAGGCAAAGGTGCTGGAGATGAGGACCACATCATGCTGGACATCTATGCCATTGAGGAGCTGAGAAACAAAGGAGTCCCTGTCACCGACGACACACCGAAATACCGCTATACCTCTGATGACAAGGGCAACTACGcGTTTGAGCAGGCCGTTGGCACAGTGCTTGCTCTGAGGCGTGAGCGAGCATTCGTGGATGAGGTGAACACAGGGCAGGAGTGTGGTGTGCTGCTTGATCAGACATCTTTCTATGCTGAGCAGGGAGGTCAGACCTTCGATGAGGGATACATGCTGCGCGAGAATGACTCCACAGAGGACAGGATGGAGTTCACGGTGAAGAACACTCAGGTGCGTGGAGGCTACGTGCTGCATGTCGGAACTGTGTATGGCACGCTGAAGGTTGGAGACCGTCTCACTCTACATGTCGATGAGGCTCGCCGCAGGCCCATCATGAGTAACCACACTTCCACCCACATCCTGAACTTTGCCTTGAGGTCTGTGCTTGGTGAAGCGGATCAGCGTGGTTCCCTTGTGGCACCGGACCGCCTGCGCTTTGACTTTACTGCCAAGGGAGCTATGAGCACAGAGGAGGTGCACCGCACTGAGGAAATCGCCACCGCCATGATAAAGGATGCCAAGCCAGTGTACGCCAAGGACGCCTCACTTGCAGCTGCCAAGGCCATCCAGGGCCTGCGTGCTGTCTTTGACGAGACATATCCAGACCCTGTGAGAGTTGTGTCCATCGGCATCCCTGTGGAGGATCTGCTGGCCGACCCCAACAGCACTGCAGGCTCTCTCACCTCCATTGAGTTCTGTGGTGGAACGCACCTGCAGAACTCGAGTCATGCTGCCCAGTTTGTGATCGTGTCCGAGGAGGCCATCGCTAAGGGGATCAGGCGAATCGTGGCTGTGACTGGAGCAGAGGCTCAGAAGGCTCAGAGGAAAGCTGATGCTCTGCGTCAGGCCCTGTCTGCCATGGCTGAGAAAGTGAAAGGTCAGACTGCTCCCAATAAAGACATCCAGAAGGAAATAGCAGACCTGAGTGAGACCTTAGGAACTGCAGTGATCTCCCAGTGGCAGAAAGACGAGATGAGGGAGGCTCTGAAGGGCTTGAAGAAGATCATGGATGACCTGGACCGTAGCAGCAAAGCTGACGTGCAGAAGAggGTTCTTGAGAAGACGAAAGAGGTCATCGACGGCAACCCCAACCAGCCTCTTCTCGTCATGGAGATGGAGAGTGGAGCTAGTGCAAAGGCTCTGAATGAGTCCCTGAAGCTGCTGAAGACTCAGTCCCCTCAGACTGCTGCCATGCTTTTTGCTGTGGACAATGAAGCGGGCAAGATTATCTGCCTCTGCCAAGTGCCGCAGGAGGTTGCAAATCAGGGCTTAAAAGCAAACGAGTGGGTTCAGGAAGTATGCCCACTGCTAGATGGAAAAGGAGGCGGGAAAGACATGTCTGCTCAGGCCACAGGCAAAAACACGCAGAGCGTCCAGGAGGCCCTGAAGCTGGCCAGACAATTTGCCCAACTCAAACTGGGACAAAACTAGATACTTCTGAGGGTTCGGGGAGAAGGCCTAAAAACCTCCTCTAATCTGACTAGAGTAATGCAGTGCTGTCTGCTGAAATTCACACAACCATCTCAATTTGCATCTCAAAAGCCATTGGCACCCTCTTTCTGTGTGCAAGGAAAGTACTGAGGGCAAGATGGCACCGTAGAAGATTACTGCACCGTCCATTCAGCTGTTCCCTAGACTTCAGAAGCACAAAAGGGGTGTTCCTAAGCTTTCTGATTGGCCAATAATGCATTGATTGACACAAGGAGGTATCAACGAATGTTAAGCCCTCTTGTGACCCTTGCACTAAAACCATTGCAAatttactatttatatatatatatatatatatatatatatatatgtatcataATAATCATGG
>XM_026927145.2
TCACCCCCAGCTGACCAATAGGAAAGCGGCATGGCCCTGACTCCTGCACTACAGCGTTTTCCGTACCGGCGTGTTTGAGCAGTGTGTGCTTGTGAAGGCAGAAGCGGTTATTGGGAGCGTTTTGTCCTCTTCGAACAACCCATCCAGCATGGACACTTCACTGACTGCCGCTCAGATCCGTGAGAAGTTCATTAACTTCTTCCGTCGCTACGAGCATCAGTATGTGCACTCGTCCTCCACCATTCCCCTGGATGACCCAACCCTTCTCTTTGCCAATGCTGGCATGAACCAGTTCAAACCTATCTTCCTAAACACGATCGACCCATCCCACCCCATGGCCAGACTGAAGCGTGCTGCCAACACCCAGAAGTGCATCCGTGCTGGTGGTAAACATAACGACCTGGATGACGTGGGCAAAGATGTGTACCACCACACCTTCTTTGAGATGTTGGGCTCCTGGTCCTTTGGAGATTACTTTAAACAATTGGCCTGTAAGATGGCTCTGGAGTTGTTGACCCAGGAGTTCGGGATCCCTCTCGAGCGCTTGTATTTCACCTACTTTGGAGGACATGCTGAAGCAGGCCTTGATTGTGACAATGAGTGCAAGCAGATCTGGCTTGACCTAGGGGTGGCAGAGGAGCGTATCCTGCCAGGTAATATGAAAGACAATTTCTGGGAGATGGGAGACACTGGTCCCTGTGGGCCCTGCAGTGAGATCCACTACGACCGCATTGGAGGCAGAGACGCTGCACACCTCGTCAACATGGACGACCCTAATGTGCTGGAGATCTGGAATCTGGTGTTTATCCAGTTCAACAGAGAGTCCGAGACAGAGCTGAAGCCTCTTCCTAAGAAGAGCATTGATACTGGAATGGGGCTGGAGCGACTGGTCTCTGTTCTGCAGAACAAGATGTCAAACTATGACACAGACCTCTTCGTTCCTTACTTTGAAGCTATCCAGAAGGGCACAGGAGCCAGGCCTTACACTGGCAAAGTTGGATCAGAAGACCAAGATGGCATTGACATGGCATATCGAGTTCTCGCTGACCACGCCCGCACCATCACTATTGCTCTGTCTGACGGTGGTCGACCTGACAACACTGGAAGGGGatacgTGTTGAGAAGGATCCTGCGACGTGCTGTTCGGTACGCTCATGAGAAGCTGGGTGCTCAGAAGGGCTTCTTCGCCTCTCTGGTGGACGTGGTGGTGCAGTCACTGGGACATGCTTTCCCTGAGCTGAAGAAAGACCCAGACACAGTGAAGGATGTCATTAATGAAGAGGAAATGCAGTTTCTTAAGACTCTCAGCAGAGGGCGACGCATCCTGGACAGGAAGATCCAAAACCTTGGAGACAGCAAGACTCTTCCAGGGGACACTGCCTGGCTGCTGTACGATACCTACGGCTTCCCTCTGGATCTGACTGTCCTCATTGCAGAGGAGAAAGGCATGGGAGTGGACCTAGCTGCGtttgaggaggagaagaaagctGCACAGCTGAAGTCCCAAGGCAAAGGTGCTGGAGATGAGGACCACATCATGCTGGACATCTATGCCATTGAGGAGCTGAGAAACAAAGGAGTCCCTGTCACCGACGACACACCGAAATACCGCTATACCTCTGATGACAAGGGCAACTACGcGTTTGAGCAGGCCGTTGGCACAGTGCTTGCTCTGAGGCGTGAGCGAGCATTCGTGGATGAGGTGAACACAGGGCAGGAGTGTGGTGTGCTGCTTGATCAGACATCTTTCTATGCTGAGCAGGGAGGTCAGACCTTCGATGAGGGATACATGCTGCGCGAGAATGACTCCACAGAGGACAGGATGGAGTTCACGGTGAAGAACACTCAGGTGCGTGGAGGCTACGTGCTGCATGTCGGAACTGTGTATGGCACGCTGAAGGTTGGAGACCGTCTCACTCTACATGTCGATGAGGCTCGCCGCAGGCCCATCATGAGTAACCACACTTCCACCCACATCCTGAACTTTGCCTTGAGGTCTGTGCTTGGTGAAGCGGATCAGCGTGGTTCCCTTGTGGCACCGGACCGCCTGCGCTTTGACTTTACTGCCAAGGGAGCTATGAGCACAGAGGAGGTGCACCGCACTGAGGAAATCGCCACCGCCATGATAAAGGATGCCAAGCCAGTGTACGCCAAGGACGCCTCACTTGCAGCTGCCAAGGCCATCCAGGGCCTGCGTGCTGTCTTTGACGAGACATATCCAGACCCTGTGAGAGTTGTGTCCATCGGCATCCCTGTGGAGGATCTGCTGGCCGACCCCAACAGCACTGCAGGCTCTCTCACCTCCATTGAGTTCTGTGGTGGAACGCACCTGCAGAACTCGAGTCATGCTGCCCAGTTTGTGATCGTGTCCGAGGAGGCCATCGCTAAGGGGATCAGGCGAATCGTGGCTGTGACTGGAGCAGAGGCTCAGAAGGCTCAGAGGAAAGCTGATGCTCTGCGTCAGGCCCTGTCTGCCATGGCTGAGAAAGTGAAAGGTCAGACTGCTCCCAATAAAGACATCCAGAAGGAAATAGCAGACCTGAGTGAGACCTTAGGAACTGCAGTGATCTCCCAGTGGCAGAAAGACGAGATGAGGGAGGCTCTGAAGGGCTTGAAGAAGATCATGGATGACCTGGACCGTAGCAGCAAAGCTGACGTGCAGAAGAggGTTCTTGAGAAGACGAAAGAGGTCATCGACGGCAACCCCAACCAGCCTCTTCTCGTCATGGAGATGGAGAGTGGAGCTAGTGCAAAGGCTCTGAATGAGTCCCTGAAGCTGCTGAAGACTCAGTCCCCTCAGACTGCTGCCATGCTTTTTGCTGTGGACAATGAAGCGGGCAAGATTATCTGCCTCTGCCAAGTGCCGCAGGAGGTTGCAAATCAGGGCTTAAAAGCAAACGAGTGGGTTCAGGAAGTATGCCCACTGCTAGATGGAAAAGGAGGCGGGAAAGACATGTCTGCTCAGGCCACAGGCAAAAACACGCAGAGCGTCCAGGAGGCCCTGAAGCTGGCCAGACAATTTGCCCAACTCAAACTGGGACAAAACTAGATACTTCTGAGGGTTCGGGGAGAAGGCCTAAAAACCTCCTCTAATCTGACTAGAGTAATGCAGTGCTGTCTGCTGAAATTCACACAACCATCTCAATTTGCATCTCAAAAGCCATTGGCACCCTCTTTCTGTGTGCAAGGAAAGTACTGAGGGCAAGATGGCACCGTAGAAGATTACTGCACCGTCCATTCAGCTGTTCCCTAGACTTCAGAAGCACAAAAGGGGTGTTCCTAAGCTTTCTGATTGGCCAATAATGCATTGATTGACACAAGGAGGTATCAACGAATGTTAAGCCCTCTTGTGACCCTTGCACTAAAACCATTGCAAatttactatttatatatatatatatatatatatatatatatatgtatcataATAATCATGG

Function

symbol description
aars Enables Ser-tRNA(Ala) hydrolase activity; alanine-tRNA ligase activity; and translation regulator activity. Involved in alanyl-tRNA aminoacylation; regulation of cytoplasmic translational fidelity; and tRNA modification. Acts upstream of or within cerebellar Purkinje cell layer development; negative regulation of neuron apoptotic process; and neuromuscular process controlling balance. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in several structures, including adrenal gland; alimentary system; nervous system; respiratory system; and urinary system. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2N and developmental and epileptic encephalopathy 29. Orthologous to human AARS1 (alanyl-tRNA synthetase 1).

NR:

description
alanine--tRNA ligase, cytoplasmic

GO:

id name namespace
GO:0006419 alanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004813 alanine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K01872 AARS, alaS; alanyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927144.2 False 3406 mRNA 0.52 22 13475531 13491178
XM_026927145.2 True 3437 mRNA 0.52 21 13475531 13491284

Neighbor

gene id symbol gene type direction distance location
sf3b3 sf3b3 coding downstream 34729 13411360 ~ 13440802 (-)
LOC113534846 NA coding downstream 38556 13436901 ~ 13436975 (-)
il34 NA coding downstream 70801 13398275 ~ 13404730 (-)
lonp2 lonp2,LOC107686284 coding downstream 79838 13374859 ~ 13395693 (-)
znf423 znf423,si:ch211-216l23.1,LOC107738741,LOC107583782 coding downstream 338314 12988345 ~ 13137217 (-)
tgm2l LOC108264831,LOC108423869 coding upstream 3319 13494603 ~ 13505452 (-)
arl2bp arl2bp,LOC108264832,LOC107686354 coding upstream 30867 13522151 ~ 13525974 (-)
ppcdc ppcdc,LOC107583771,LOC107742893,LOC107686355,LOC107738727,LOC107672202 coding upstream 80569 13571853 ~ 13575817 (-)
ints14 vwa9,LOC107583765,LOC107596981 coding upstream 91644 13582928 ~ 13588984 (-)
dennd4a dennd4a coding upstream 121512 13612796 ~ 13643572 (-)
LOC117597528 NA non-coding downstream 157523 13311395 ~ 13318008 (-)
G98790 NA non-coding downstream 292981 13182343 ~ 13182550 (-)
G98776 NA non-coding downstream 340358 13129200 ~ 13135173 (-)
G98767 NA non-coding downstream 446934 13027458 ~ 13028597 (-)
G98607 NA non-coding downstream 636989 12838220 ~ 12838542 (-)
G99118 LOC108280567 non-coding upstream 154291 13645575 ~ 13647786 (-)
G99134 NA non-coding upstream 241667 13732951 ~ 13768470 (-)
LOC113534845 NA non-coding upstream 273642 13764926 ~ 13765056 (-)
LOC113534347 NA non-coding upstream 291491 13782775 ~ 13784737 (-)
LOC113534852 NA non-coding upstream 292271 13783555 ~ 13783624 (-)
G98770 NA other downstream 423220 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 1051553 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1070250 12396507 ~ 12405281 (-)
admb NA other downstream 1130079 12311822 ~ 12345452 (-)
sspn sspn other downstream 1597327 11870908 ~ 11878204 (-)
c6h15orf39 c4h15orf39 other upstream 59396 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 844652 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1855882 15347166 ~ 15357563 (-)
G101178 NA other upstream 4696163 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 6488785 19980069 ~ 19980259 (-)

Expression


Co-expression Network