arpin (arpin)


Basic Information

Item Value
gene id arpin
gene name arpin
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14653915 ~ 14657137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927162.2
CCTCACCTCTTCCTGATTAGCAACGTTGTCGCTTACTGATGACGTAAATTGAGGAAGCGGCAATaggtttttctgttttgttttttaaaaactttcacGCTACACCTCAAAAATGAGTCGAATATATGACAACGCAGTATTACAAAATAAACCTGTTCATTGCGAGAAACTGTCCTCTTCGTGGGAGCCATCTGTCTATCAGAGTGGCCCTGGAGTGATTTTAGAGGGAACTCTTGTTGATGTGTCTCGCCATGCACTTACCGACATCACCAGTAAAAAGGTGCGTTATAACATCCTGTACGTCAAGCCAAGTCAAATCCACTACAGAAAATATGACTCCAAGGGCAATGAGATTGAGCCCAACTTCAGTGAAACAAGGAAAGTCAACAAAGGCTATCTTATGTCATCCTACAAATTGGAGGCTAAAGGCGAATCAGATCGTCTTACTGAGGAGCAGCTGACGGGCATCGTGAACAAAAAGGAACTGCTTAGTATCACACAGAAGCATTGTCCCAAACAAGCCTTTGCATTCTGGATCTTAGAGGCTGAACTGGAGAAGACAGAGCTGGAGATAGGTCAGGATATCCGTTTAAAGACTAAAGGAGATGGTCCCTTTATCTtCTCCTTTGCCAAGTTGGATGCTGGCACAGTGACAAAGTGCAATTTTGCAGGAGATGAGGCAGCTGGGGAATCATGGACAGACAAAATAATGGCAAACAAAGCAGATGCTCCGAGTAAAGCGAAGCCAGCTGCACTGGGCGAAGGGGCTGAGGAGGATGAATGGGATGACTGACCAGTACCCAGAATACCTGGCAGAAACTTGTGGCAAGCATTTTCTCACCCAGACATACTTTATACACCcaaatatactttatactgtaaA

Function

symbol description
arpin Involved in directional locomotion. Acts upstream of or within negative regulation of cell migration. Predicted to be located in lamellipodium. Is expressed in intestinal bulb. Orthologous to several human genes including ARPIN (actin related protein 2/3 complex inhibitor).

NR:

description
arpin

GO:

id name namespace
GO:0030027 lamellipodium cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927162.2 True 883 mRNA 0.44 6 14653915 14657137

Neighbor

gene id symbol gene type direction distance location
fam169b fam169b coding upstream 4948 14640960 ~ 14648967 (+)
pgpep1l pgpep1l coding upstream 120657 14528876 ~ 14533258 (+)
cftr cftr,LOC107738689,LOC107596947,LOC107583749 coding upstream 200839 14426532 ~ 14453076 (+)
bida NA coding upstream 289110 14355893 ~ 14364805 (+)
wee2 wee2 coding upstream 298995 14349167 ~ 14354920 (+)
kmt5b kmt5b,LOC108264420 coding downstream 19407 14676544 ~ 14686478 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368 coding downstream 38640 14695777 ~ 14709427 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding downstream 127803 14784940 ~ 14877479 (+)
necab2 necab2,LOC107672281,LOC106573751 coding downstream 228119 14885256 ~ 14969007 (+)
ranbp10 ranbp10,LOC107583731 coding downstream 474128 15131265 ~ 15170919 (+)
G99362 NA non-coding upstream 22554 14630335 ~ 14631361 (+)
G99276 ighmbp2 non-coding upstream 335261 14317597 ~ 14318654 (+)
G99261 NA non-coding upstream 391398 14261441 ~ 14262517 (+)
G99260 kif23 non-coding upstream 393173 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 663762 13989942 ~ 13990153 (+)
G99516 LOC108263939 non-coding downstream 68481 14725618 ~ 14725938 (+)
G99518 NA non-coding downstream 72847 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 369350 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 398130 15055267 ~ 15058771 (+)
G99766 NA non-coding downstream 514195 15171332 ~ 15173435 (+)
G99341 synm other upstream 129435 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 611463 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 697564 13932539 ~ 13956351 (+)
G98972 NA other upstream 864525 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 938149 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 643345 15300482 ~ 15346146 (+)
G100306 NA other downstream 1692320 16349457 ~ 16349787 (+)
G100345 NA other downstream 1943120 16600257 ~ 16601067 (+)
rgma NA other downstream 2000464 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2743289 17400426 ~ 17443468 (+)

Expression


Co-expression Network