tsnaxip1 (tsnaxip1)


Basic Information

Item Value
gene id tsnaxip1
gene name tsnaxip1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15121047 ~ 15132206 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927199.2
CAGCTCAGCGGGATGAAGCCCTGCTCTCTGCCGCTCCGAGTTTCCCCACAGCACCGAAAACCACTCACACTGCTACAACTGAGCGAGCTGGAGCAGGCTTCAGCACTATCCAGCCGGCTTTCGTCAAGCAAGGGGACTCAAGGGCAAGTGAGGTCTGTGCCAAAAATACTGAAAGTTACAGATGGATGTAGCCCTGGCTATCTTTCCACCTGGCCTGCCCATGTCAGCTCTCAGGTTGTTCAGCAACACAGTCAAAAACACACTTGCTCTGCAGCAAACAGAAACCACGGATACAGTGATGAATTTGGACGTACTGTAGCTAAGCCACGGTTCCTGGAACAGCTGGAGTGCTATCTCAGGAGAGAACTGGCATCTTTAGATATGCATAGTCCCAAACTCCAGCAGCTCAAACTTCAGGTATACCGAGAAGTTTTTGACTATTTTATTGAAGACTTTAAAACATACAAGCCACTATTGTCTGCCATCAAAAACGAGTATGAGATTACTCTAGTGTATCTGCAACAGCAGATCCAAGAGCTGGAGCCTCTCCGTGCCCAGATGGTGCTGCTGTCTGAACGGTGCGAGGAGAGGATTCTGGGCCTGAGGGAGCAAGAGAGAGCTGAGATCACGGCTTTGAAACAGGAGCGCCAACATCTGCAGCAAGTCATTGAGAGCATGAAGGAGCAACAGGCAGCTTTGCAGACCCAGGTTTCATATCTAGAGGAGGACCTTGCAAGACAGTATGCGCTGTACAGGGAGGAACGTGATGCCCGCAGGCTGCTCATTGACAATATCAGCAGCATGAGCTACAGCCCACAGGAGCCTGGTTACTCACTGAATGAGGATCCTGTGAATCTAAAGCTGGCTTTGGATGTGTGTAGAGAGGATCTAAACAAGGCCCAGATGGAGCTCAACCACTTGCATGCAGAATATGGAGATGTGGTTCCCCGTAGGGACTGGGAGAATCTAGAAAGTACGTACCAGGAGAACCTCCTAAAGCTGGAGACCCTACAGTCTGACTTCAACCAATTGAAGACGGAATATGACACGTTGCTAAATTTACATCAGCAGATCAGCACAAAGAGAGACAGCCTTCACAGAAAACCCTCAACTCCTAGACCACGGTGGGAGCAGTGTGCAGATGTACTTGGTAGTGGGGATCGCTGTTCTGAGCTCTTTGAGGGCCAGTCTAGTCAGAAAAGACTGGAGATCTTGCTGAAGGAACTGAACAGCATGGGCTTGGAGCAGAAAGACTTCTTTACTGGACTGGGTACTTCCAGCGATGTTCCCATCTACCTGCGCTATGAGGGGCAACAGAGGAACCTCCGATTGAAAAAGAATGACATTGTTAGAGTTCTAAAGGACATATGGAGAGAGAAAGCATCTGAAGATGAGAAGAAGGATGAAAGCAGTGATCTAAAGGAGTTTCTGCATCAGTATCTGTTAAAGCAGCATAAGGAGAGGGCAGGACAGTGGGCTTACAGCCTGATCGATGGCATCAAGCAATACCTAGATGATGCCTTCATTGGTCTCTTCTATGACATTCTCCAAGGCAAGGTGGATGAAAGTGTGTACCATGGCCAGACCCATCTACTGTCTCATCTGCTCAAGGTGCTTATACAGAGTGACAGCACTGAGAGTGGATTGCTAAGTACACCCCAATTCAGTGAGGCTCTGAGGACAGCTTTCCCCCTGAAAGGAGATAAGGATATAGAGGAACTGGTGCTGGCTGCTCAGTCAGAACTGCAGACCAGCCGAGGAAGCATTGCCTATCAGAGGCTGTACACAGAGGACGCAGATGGAAAGCAGAGTGATTTCCTGGGTCTGGTAAAAAAGCAGGCTATGGCCGAGAGACGCCAGTACATCAACCAGCTGAGGGAACAGCTAGGAGGAAAAGGGGAAGTGGGAGTGGAAGATTTAAGAGCTGTTTTCAAGACAATTGATCCCACACTGGACTCTGAGACTCTGGACTGTTATTTGAGTACGGCCTTTCAGACTAAAGAGCTGCACCAGCACACAGCACTTTTGGACACTGAGGTTGCTCTACAGCGCCTCTCTGCAGCTAATGTAAGCAGGGCAGGACCCATGCCTCAGTCGGAATaattcatttacacacatttcacatgtgtAAATGGACtcttatatttaaacataatcaaGGAAATATACtggataaatttttttttaaatctaataaaaagaATACATTCACAGTCTACTCTTCAACATGatgtttaaaggtgcattaggtaagattagtctttttttttcaagagtaTGTATCTTAACAGTTAGTTGGGTTTGACAACTATCATATGAATGATTCctgcccatgttcacaaagctccgtCCCCGTTATCTACGGTGGCCTGTAGAGTGTctaaaaaaatgactgacaggaggcgcatccaaacacaaacaagcattctggacaggaagtcagttttccaaatgagTTTTCTCATGGACTTAATGCACTTTTACTAAGGCCATGGCTTAAtgcataggttttttttttttaaaaaatttttatcaCGTCCTACAtgtcttccaggttatttgtacaagtaaagaattttaaaaaatgactattgCATCTTTAAGGAAATCTTAAGATAACGGTAACTGATCACAAAAATGGCTTAATGAGAGAGTGTTTTATATCCTCATAACACCCCACTGTCCTCACATCAAAACATCACATGTTCTCCTAAAATCTATGTGCTTGTAAGATCCTCATGAGGACAACTGGGTCTTACTAtttttccaaacttcttccagtTTGAAGACATTGATCAATTTCTATAGTTATCAGGTGTGAGTAAACAGAAATAGTGAGGAGATACAATATTATTGTACAGGTTTCAAGAGAGTATGTTCAGTAGGATATATAGCAGTGTAGGGCTCGAGGTTTAAAAACTGGTGATCAGTAAACACTGACATGCATAGCCTATTGTAATCACATTAAAACTGGTGTATCTAATATGAGCTAGTTTTAACTGTACTATTGTTAACTTATTCTTTCAGCACATATATCCAGGTACTAGTACTAGTGATGTTGACctattaaactttatttatttaaactttattttggcTTATAAACTTTATTACACTGTTGCCTTTGTTATTGGGCTGataaaaaatatagaaacatGGGACTGGGACCAACTAGTTAGAAAAACACTATTGACACTATTGAATAAGACACTATTGAAAATGCCTGTAATACTTGTGTACAATGAGAACATGATGATGGTgactataaaaatgtttataatgaaatgaattgaaacagtattacactgtttactttttacattaTCGGACACTTTTATTTAGTGTTGAGTGTTCTTATGTGGTGAGGAATAACAATGCTCATAGACCTAGCATAcaatatatgcagtatatactgtatgtacttttCAGTGTAGCGTATGTAGAAATTCCTTCTAAAACGTTgctcatatacagtactgtgcaaaagtcttaggcacatgtaaagaaatgctgtagagcaaa
>XM_026927200.2
GGTCGCAACGTTATTGCTCAAGTCGCAATATAAACTAcgcaaaaaatattttaaatttaaaggaagagaagagaattattatctattttatttttattatatatttttatatatattattatatatataatatatatatttttaaatctacaCATGTCTGTAAAGAAGGACATCCATTTGCCACCACTGTCAGCGTTTGAAAGCAGGCTTTCGTCAAGCAAGGGGACTCAAGGGCAAGTGAGGTCTGTGCCAAAAATACTGAAAGTTACAGATGGATGTAGCCCTGGCTATCTTTCCACCTGGCCTGCCCATGTCAGCTCTCAGGTTGTTCAGCAACACAGTCAAAAACACACTTGCTCTGCAGCAAACAGAAACCACGGATACAGTGATGAATTTGGACGTACTGTAGCTAAGCCACGGTTCCTGGAACAGCTGGAGTGCTATCTCAGGAGAGAACTGGCATCTTTAGATATGCATAGTCCCAAACTCCAGCAGCTCAAACTTCAGGTATACCGAGAAGTTTTTGACTATTTTATTGAAGACTTTAAAACATACAAGCCACTATTGTCTGCCATCAAAAACGAGTATGAGATTACTCTAGTGTATCTGCAACAGCAGATCCAAGAGCTGGAGCCTCTCCGTGCCCAGATGGTGCTGCTGTCTGAACGGTGCGAGGAGAGGATTCTGGGCCTGAGGGAGCAAGAGAGAGCTGAGATCACGGCTTTGAAACAGGAGCGCCAACATCTGCAGCAAGTCATTGAGAGCATGAAGGAGCAACAGGCAGCTTTGCAGACCCAGGTTTCATATCTAGAGGAGGACCTTGCAAGACAGTATGCGCTGTACAGGGAGGAACGTGATGCCCGCAGGCTGCTCATTGACAATATCAGCAGCATGAGCTACAGCCCACAGGAGCCTGGTTACTCACTGAATGAGGATCCTGTGAATCTAAAGCTGGCTTTGGATGTGTGTAGAGAGGATCTAAACAAGGCCCAGATGGAGCTCAACCACTTGCATGCAGAATATGGAGATGTGGTTCCCCGTAGGGACTGGGAGAATCTAGAAAGTACGTACCAGGAGAACCTCCTAAAGCTGGAGACCCTACAGTCTGACTTCAACCAATTGAAGACGGAATATGACACGTTGCTAAATTTACATCAGCAGATCAGCACAAAGAGAGACAGCCTTCACAGAAAACCCTCAACTCCTAGACCACGGTGGGAGCAGTGTGCAGATGTACTTGGTAGTGGGGATCGCTGTTCTGAGCTCTTTGAGGGCCAGTCTAGTCAGAAAAGACTGGAGATCTTGCTGAAGGAACTGAACAGCATGGGCTTGGAGCAGAAAGACTTCTTTACTGGACTGGGTACTTCCAGCGATGTTCCCATCTACCTGCGCTATGAGGGGCAACAGAGGAACCTCCGATTGAAAAAGAATGACATTGTTAGAGTTCTAAAGGACATATGGAGAGAGAAAGCATCTGAAGATGAGAAGAAGGATGAAAGCAGTGATCTAAAGGAGTTTCTGCATCAGTATCTGTTAAAGCAGCATAAGGAGAGGGCAGGACAGTGGGCTTACAGCCTGATCGATGGCATCAAGCAATACCTAGATGATGCCTTCATTGGTCTCTTCTATGACATTCTCCAAGGCAAGGTGGATGAAAGTGTGTACCATGGCCAGACCCATCTACTGTCTCATCTGCTCAAGGTGCTTATACAGAGTGACAGCACTGAGAGTGGATTGCTAAGTACACCCCAATTCAGTGAGGCTCTGAGGACAGCTTTCCCCCTGAAAGGAGATAAGGATATAGAGGAACTGGTGCTGGCTGCTCAGTCAGAACTGCAGACCAGCCGAGGAAGCATTGCCTATCAGAGGCTGTACACAGAGGACGCAGATGGAAAGCAGAGTGATTTCCTGGGTCTGGTAAAAAAGCAGGCTATGGCCGAGAGACGCCAGTACATCAACCAGCTGAGGGAACAGCTAGGAGGAAAAGGGGAAGTGGGAGTGGAAGATTTAAGAGCTGTTTTCAAGACAATTGATCCCACACTGGACTCTGAGACTCTGGACTGTTATTTGAGTACGGCCTTTCAGACTAAAGAGCTGCACCAGCACACAGCACTTTTGGACACTGAGGTTGCTCTACAGCGCCTCTCTGCAGCTAATGTAAGCAGGGCAGGACCCATGCCTCAGTCGGAATaattcatttacacacatttcacatgtgtAAATGGACtcttatatttaaacataatcaaGGAAATATACtggataaatttttttttaaatctaataaaaagaATACATTCACAGTCTACTCTTCAACATGatgtttaaaggtgcattaggtaagattagtctttttttttcaagagtaTGTATCTTAACAGTTAGTTGGGTTTGACAACTATCATATGAATGATTCctgcccatgttcacaaagctccgtCCCCGTTATCTACGGTGGCCTGTAGAGTGTctaaaaaaatgactgacaggaggcgcatccaaacacaaacaagcattctggacaggaagtcagttttccaaatgagTTTTCTCATGGACTTAATGCACTTTTACTAAGGCCATGGCTTAAtgcataggttttttttttttaaaaaatttttatcaCGTCCTACAtgtcttccaggttatttgtacaagtaaagaattttaaaaaatgactattgCATCTTTAAGGAAATCTTAAGATAACGGTAACTGATCACAAAAATGGCTTAATGAGAGAGTGTTTTATATCCTCATAACACCCCACTGTCCTCACATCAAAACATCACATGTTCTCCTAAAATCTATGTGCTTGTAAGATCCTCATGAGGACAACTGGGTCTTACTAtttttccaaacttcttccagtTTGAAGACATTGATCAATTTCTATAGTTATCAGGTGTGAGTAAACAGAAATAGTGAGGAGATACAATATTATTGTACAGGTTTCAAGAGAGTATGTTCAGTAGGATATATAGCAGTGTAGGGCTCGAGGTTTAAAAACTGGTGATCAGTAAACACTGACATGCATAGCCTATTGTAATCACATTAAAACTGGTGTATCTAATATGAGCTAGTTTTAACTGTACTATTGTTAACTTATTCTTTCAGCACATATATCCAGGTACTAGTACTAGTGATGTTGACctattaaactttatttatttaaactttattttggcTTATAAACTTTATTACACTGTTGCCTTTGTTATTGGGCTGataaaaaatatagaaacatGGGACTGGGACCAACTAGTTAGAAAAACACTATTGACACTATTGAATAAGACACTATTGAAAATGCCTGTAATACTTGTGTACAATGAGAACATGATGATGGTgactataaaaatgtttataatgaaatgaattgaaacagtattacactgtttactttttacattaTCGGACACTTTTATTTAGTGTTGAGTGTTCTTATGTGGTGAGGAATAACAATGCTCATAGACCTAGCATAcaatatatgcagtatatactgtatgtacttttCAGTGTAGCGTATGTAGAAATTCCTTCTAAAACGTTgctcatatacagtactgtgcaaaagtcttaggcacatgtaaagaaatgctgtagagcaaa

Function

symbol description
tsnaxip1 Predicted to act upstream of or within establishment or maintenance of cell polarity. Predicted to be located in bicellular tight junction and membrane. Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1).

NR:

description
translin-associated factor X-interacting protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927199.2 False 3522 mRNA 0.43 16 15121047 15132206
XM_026927200.2 True 3612 mRNA 0.41 16 15121047 15130391

Neighbor

gene id symbol gene type direction distance location
nutf2 nutf2 coding downstream 1329 15105315 ~ 15119718 (-)
edc4 edc4,LOC107733561,LOC107726309 coding downstream 15937 15075874 ~ 15105110 (-)
nrn1la nrn1l coding downstream 48552 15043298 ~ 15072495 (-)
pskh1 pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554 coding downstream 94179 15018958 ~ 15026868 (-)
mbtps1 mbtps1,LOC107672278,LOC107694940,LOC107596929 coding downstream 105910 14988788 ~ 15015137 (-)
pard6a pard6a,LOC107692936 coding upstream 45005 15177211 ~ 15200248 (-)
LOC113534617 LOC108264368 coding upstream 339423 15471629 ~ 15473015 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding upstream 353807 15486013 ~ 15499252 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding upstream 942741 16074947 ~ 16083613 (-)
LOC113534689 NA coding upstream 1449156 16581362 ~ 16610310 (-)
G99493 NA non-coding downstream 472054 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 517575 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 585037 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 601263 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 667940 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 17197 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 27997 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 39105 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 43969 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 165399 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 774039 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1558473 13550680 ~ 13562574 (-)
G98770 NA other downstream 2068736 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2697069 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2715766 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 214960 15347166 ~ 15357563 (-)
G101178 NA other upstream 3055241 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4847863 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5263660 20395866 ~ 20416574 (-)
G102566 NA other upstream 5821396 20953602 ~ 20966910 (-)

Expression


Co-expression Network