ranbp10 (ranbp10,LOC107583731)


Basic Information

Item Value
gene id ranbp10
gene name ranbp10,LOC107583731
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15131265 ~ 15170919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927201.2
CACTGCGCGCCTGACTGTAGAGCGTTGGTTATCCGGGGATATCGCTACTGCTATTTCTCCTCAGTCTATCGTTCTGCCTTTTAGAAGATTGACACAACTAGGTAGGGAacaacaaagaaaggaaaacaaaacacaacccaAAAAATGGCAGAGCTTGGAGCAGGCAGCCTGTTACAGGGGGATCCTGCTTTAACTGACCAAGAGCAGGAGCTAAACGAGCGTTTGAAGCGGCTCTATCCGGCCGTGAACGAGGAAGAGACCCCCTTACCCCGGTCGTGGAGCCCCAAGGATAAATACAGCTACATCGGGCTGTCGCAGAACAATCTGCGGGTACATTATAAAGGTCACGGCAAAAACCACAAAGACGCAGCATCCGTGCGAGCTACCCACCCAATCCCCGCTGCCTGTGGTATCTACTACTTCGAGGTGAAGATTGTCAGCAAAGGGAGGGATGGGTACATGGGCATTGGACTGTCCGCCCAGGGGGTCAACATGAACAGACTGCCGGGCTGGGACAAACACTCCTACGGTTACCACGGTGATGATGGGCACTCCTTTTGCTCCTCAGGGACCGGCCAACCATATGGGCCCACCTTCACGACGGGTgatgtgattggctgctgcGTGAACCTCATCAACAACACGTGCTTTTACACTAAGAACGGACACAGCTTGGgTGTGGCCTTCACAGACCTCCCAcCCAACCTGTATCCTACAGTAGGGCTACAGACTCCTGGAGAGATTGTAGACGCTAACTTTGGCCAGCATCCTTTTGTGTTCGACATCGAGGACTATATGAGCGAGTGGAGGGCAAAGATCCACAACATGATCGCTCGTTTCCCCATCGGAGAGAGACTCGGAGAGTGGCAGACAGTGCTGCAGAATATGGTATCCAGCTACCTGGTGCATCATGGGTACTGCGCTACTGCCATGGCCTTTGCCCGAGCCACAGAGACCATGATACAGGAGGACCAGGCCTCCATAAAGAACAGGCAGAGAATACAGAAGCTGGTATTGGAAGGTCGTGTTGGAGAGGCGATCGAAGCCACACATCAGCTGTACCCCGGACTCCTAGAACGCAACCCCAATTTACTCTTCATGTTGAAGTGTCGGCAGTTTGTGGAGATGGTGAATGGTACAGACAGTGAGGTACGATGCTTTAGTGTCCACTCCCCCAACAACCAGGACAGTTATTCCGGTTCCCCAAGCCTTAGCCCCCGGCACGGAGCCACCAACCCCCACCTGCACAGCACAGGAGCAGACAGTCCCACATGCAGTAATGGTGTGACGCCTTCTAACAAAAACAAAGGCCACACCAAATACCCCGGAGCTGGCTCCGCCTCCTCTTCCCCTTCCTCCTCACCTTCCTCTGTCAACTATTCTGAGTCCAACTCTACAGACTCCACCAAGTCCCAGCCACACAGCACCACCAGCAACCAGGAAACCAGtgaTAGTGAGATGGAGATTGAGGCGGAGCACTACAGTAATGGTGTGGCCGAGAATTCCTCTACCCGCATCATGAACGGCACTTACAAGCACCAGGAGATCATACAAGGGGACGACAGCAGCGTGGGCAATGGAGTAGCAGAGGACAGCTGTGGCTCGAGGCAGCTGTGTGGGGGTAACCAGGCTGCCACGGAGCGCATGATCCAGTTTGGCCGCGAGCTGCAGGCGCTCAGTGAGCAACTCTCACGCCAGTATGGCAAGAACGCCATGCATAAGAAGATGCTGCAGGATGCATTTAGTCTACTGGCATACTCGGACCCATGGAATTGCCCAGTGGGCCAGCAGCTGGACCCCACACAGAGAGAGGCCATCTGCTCTGCTCTCAACAGCGCCATCTTGGAGTCTCAGAATTTACCCAAGCAGCCCCCCCTCATGCTGGCACTGGGGCAGGCCACCGAGTGTGTGCAGCTCATGGCCCGTGTGCGCTCCGGCTCCTGCTCATTCGCCAGAGTCGACAACTTTTTGCACTAGCCCAAGTCCAGGCAATGTTCAGGACAGTTAAGAAGAGGACTTTCCAGCCGGTTGCCATGAGGAACACGCTTGTTTGAAACAGTGCATTCACTTGCCGCAGGCAGTTCGGATGAGAGATGACTAGACACATGGAGGAGAGGcttctttttaatttagtattattaaatacaaactGTGTGACACTATTTAAAGgcaattaattattattctgtttatctagtcatttttattttagtttctatTTTGTCAGTTTGTTGTGCTCGCCTTGACATTGAACCAGAATTCCCTTCTTTGTTTTTATGGGTGGATTCAGTGCATAGTATTCCAGACACACACCATATTGAGGGTAATACATAGCAGTAAAGTCTTTTCAAATTCTAA
>XM_026927202.2
CACTGCGCGCCTGACTGTAGAGCGTTGGTTATCCGGGGATATCGCTACTGCTATTTCTCCTCAGTCTATCGTTCTGCCTTTTAGAAGATTGACACAACTAGGTAGGGAacaacaaagaaaggaaaacaaaacacaacccaAAAAATGGCAGAGCTTGGAGCAGGCAGCCTGTTACAGGGGGATCCTGCTTTAACTGACCAAGAGCAGGAGCTAAACGAGCGTTTGAAGCGGCTCTATCCGGCCGTGAACGAGGAAGAGACCCCCTTACCCCGGTCGTGGAGCCCCAAGGATAAATACAGCTACATCGGGCTGTCGCAGAACAATCTGCGGGTACATTATAAAGGTCACGGCAAAAACCACAAAGACGCAGCATCCGTGCGAGCTACCCACCCAATCCCCGCTGCCTGTGGTATCTACTACTTCGAGGTGAAGATTGTCAGCAAAGGGAGGGATGGGTACATGGGCATTGGACTGTCCGCCCAGGGGGTCAACATGAACAGACTGCCGGGCTGGGACAAACACTCCTACGGTTACCACGGTGATGATGGGCACTCCTTTTGCTCCTCAGGGACCGGCCAACCATATGGGCCCACCTTCACGACGGGTgatgtgattggctgctgcGTGAACCTCATCAACAACACGTGCTTTTACACTAAGAACGGACACAGCTTGGgTGTGGCCTTCACAGACCTCCCAcCCAACCTGTATCCTACAGTAGGGCTACAGACTCCTGGAGAGATTGTAGACGCTAACTTTGGCCAGCATCCTTTTGTGTTCGACATCGAGGACTATATGAGCGAGTGGAGGGCAAAGATCCACAACATGATCGCTCGTTTCCCCATCGGAGAGAGACTCGGAGAGTGGCAGACAGTGCTGCAGAATATGGTATCCAGCTACCTGGTGCATCATGGGTACTGCGCTACTGCCATGGCCTTTGCCCGAGCCACAGAGACCATGATACAGGAGGACCAGGCCTCCATAAAGAACAGGCAGAGAATACAGAAGCTGGTATTGGAAGGTCGTGTTGGAGAGGCGATCGAAGCCACACATCAGCTGTACCCCGGACTCCTAGAACGCAACCCCAATTTACTCTTCATGTTGAAGTGTCGGCAGTTTGTGGAGATGGTGAATGGTACAGACAGTGAGGTACGATGCTTTAGTGTCCACTCCCCCAACAACCAGGACAGTTATTCCGGTTCCCCAAGCCTTAGCCCCCGGCACGGAGCCACCAACCCCCACCTGCACAGCACAGACAGTCCCACATGCAGTAATGGTGTGACGCCTTCTAACAAAAACAAAGGCCACACCAAATACCCCGGAGCTGGCTCCGCCTCCTCTTCCCCTTCCTCCTCACCTTCCTCTGTCAACTATTCTGAGTCCAACTCTACAGACTCCACCAAGTCCCAGCCACACAGCACCACCAGCAACCAGGAAACCAGtgaTAGTGAGATGGAGATTGAGGCGGAGCACTACAGTAATGGTGTGGCCGAGAATTCCTCTACCCGCATCATGAACGGCACTTACAAGCACCAGGAGATCATACAAGGGGACGACAGCAGCGTGGGCAATGGAGTAGCAGAGGACAGCTGTGGCTCGAGGCAGCTGTGTGGGGGTAACCAGGCTGCCACGGAGCGCATGATCCAGTTTGGCCGCGAGCTGCAGGCGCTCAGTGAGCAACTCTCACGCCAGTATGGCAAGAACGCCATGCATAAGAAGATGCTGCAGGATGCATTTAGTCTACTGGCATACTCGGACCCATGGAATTGCCCAGTGGGCCAGCAGCTGGACCCCACACAGAGAGAGGCCATCTGCTCTGCTCTCAACAGCGCCATCTTGGAGTCTCAGAATTTACCCAAGCAGCCCCCCCTCATGCTGGCACTGGGGCAGGCCACCGAGTGTGTGCAGCTCATGGCCCGTGTGCGCTCCGGCTCCTGCTCATTCGCCAGAGTCGACAACTTTTTGCACTAGCCCAAGTCCAGGCAATGTTCAGGACAGTTAAGAAGAGGACTTTCCAGCCGGTTGCCATGAGGAACACGCTTGTTTGAAACAGTGCATTCACTTGCCGCAGGCAGTTCGGATGAGAGATGACTAGACACATGGAGGAGAGGcttctttttaatttagtattattaaatacaaactGTGTGACACTATTTAAAGgcaattaattattattctgtttatctagtcatttttattttagtttctatTTTGTCAGTTTGTTGTGCTCGCCTTGACATTGAACCAGAATTCCCTTCTTTGTTTTTATGGGTGGATTCAGTGCATAGTATTCCAGACACACACCATATTGAGGGTAATACATAGCAGTAAAGTCTTTTCAAATTCTAA

Function

symbol description
ranbp10 Predicted to be involved in cell surface receptor signaling pathway and cytoskeleton organization. Predicted to be active in cytoplasm. Orthologous to human RANBP10 (RAN binding protein 10).

NR:

description
ran-binding protein 10 isoform X1

GO:      GO:0008536

KEGG:

id description
K23334 RANBP9_10, RANBPM; Ran-binding protein 9/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927201.2 True 2358 mRNA 0.52 15 15131265 15170919
XM_026927202.2 False 2352 mRNA 0.52 15 15131265 15170919

Neighbor

gene id symbol gene type direction distance location
necab2 necab2,LOC107672281,LOC106573751 coding upstream 162258 14885256 ~ 14969007 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding upstream 253786 14784940 ~ 14877479 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368 coding upstream 421838 14695777 ~ 14709427 (+)
kmt5b kmt5b,LOC108264420 coding upstream 444787 14676544 ~ 14686478 (+)
arpin arpin coding upstream 474128 14653915 ~ 14657137 (+)
ripor1 fam65a coding downstream 44131 15215050 ~ 15291450 (+)
ctcf ctcf,LOC107583725 coding downstream 121005 15291924 ~ 15299579 (+)
cfdp1 cfdp1,LOC105419833 coding downstream 187484 15358403 ~ 15388947 (+)
bcar1 bcar1 coding downstream 224184 15395103 ~ 15467776 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding downstream 306547 15477466 ~ 15482137 (+)
G99705 NA non-coding upstream 72494 15055267 ~ 15058771 (+)
G99704 NA non-coding upstream 104179 15026487 ~ 15027086 (+)
G99518 NA non-coding upstream 401082 14729984 ~ 14730183 (+)
G99516 LOC108263939 non-coding upstream 405327 14725618 ~ 14725938 (+)
G99362 NA non-coding upstream 499904 14630335 ~ 14631361 (+)
G99766 NA non-coding downstream 413 15171332 ~ 15173435 (+)
G99786 NA non-coding downstream 5317 15176236 ~ 15180771 (+)
G99813 NA non-coding downstream 44472 15215391 ~ 15215716 (+)
G99819 NA non-coding downstream 52730 15223649 ~ 15223854 (+)
G99879 NA non-coding downstream 279900 15450819 ~ 15455039 (+)
G99341 synm other upstream 606785 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1088813 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1174914 13932539 ~ 13956351 (+)
G98972 NA other upstream 1341875 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 1415499 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 129563 15300482 ~ 15346146 (+)
G100306 NA other downstream 1178538 16349457 ~ 16349787 (+)
G100345 NA other downstream 1429338 16600257 ~ 16601067 (+)
rgma NA other downstream 1486682 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2229507 17400426 ~ 17443468 (+)

Expression


Co-expression Network