kmt5b (kmt5b,LOC108264420)


Basic Information

Item Value
gene id kmt5b
gene name kmt5b,LOC108264420
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14676544 ~ 14686478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927225.2
GAACACCGGAGCTGAGGGAGCTGAAGAGCTGAGAGCtgaagagcagctctgacagggaGAGGATGTTGTTGCTATGCACGCCGGCGAGCTGCGCACTCACACCAGTGGGCATTTAAAGGGAAATAACAACGCGCTCTTTGTACACATCCAAGTTTTCGCAGGATTTCATAGTATTTGCTAAACTGTCACTGTGGGCTTCTGTGAAAGGTCATTTGGACTCTCTGTGGATTTAGTAACAGCGAGCATCAGACTAGATGCCAGGAACAATAGGTTTGGGGTCTATTTTTTTCGGAGGAGGTTCTGTGTCCTATCTTTCCACTATAGCCAAACCCTGTCGCCATCttgaattttaatgtaaattatcTGGCAGTTTATGGTTGCTATATGGAATATTTTGTAAGACATTCCGCTCGTCTCGGGCACTTGTGACAGACATGTCTTAACATAGGAAAAAGAACAAAGTGGAAGCAGGATTGAAAATTAAGCTCTGCACCATATATCCTAATTGCCCTGTAAGCGGGAAATAAAACCGCTCCTCGCATGTTGCTGATGATTTCTCATAAGTACATAGAAGCTAAATGAGCCTTCACCAGAAAGCCTGCTGGTATGAAGTAGATGGGAGAATCCAAGAACATGGTGCTGAATGGAAGGAGACATGGCAGTAGGTTCTCCAGCAATCAGCCCGTTGGGAAGACCAGGCTGCAGAATGGCCAGAGGGCCCACCTGCGCCAGAGCAAAAGCTCCCCTAGTGGCAGAAGATGCAGCCGGCGTGTCAGTGGTGCAGCCCCAGAGCCAGAGAGGCGCCATGTGCCCTCATCAGGGATGACGGCTAAGGAGCTGTGTGAATATGACGACTTGTCCACCAGCCTGATTCTGGACTCTTACTTGGGTTTTCAGACTCACAAGATGAATACGAGATTTCGCCCAATCAAAGGTCGACAGTCGGAGCTTAGAGAAGTGATTGAAAGCTTCAAGAAGAATGACAACCTGGAAAAAGCTTTCCAGGCTTTGACCTCTGCAGACTGGAGAAGACATCACTTTCTCAATAAGACAAAGGCCCAGGAGAAGCTGTTCAAAGCACATGTCTTTGTTTACTTGCGTATGTTTGCAGCAGACAGTGGGTTTGAGATTCTTCCATGCAATCGCTATTCCTCTGAGCAAAATGGAGCCAAAATTGTAGCAACAAAAGACTGGAAAAGGAACGATGAAATTGAACACCTTGTGGGTTGCATTGCTGAGCTGTCTGCTAATGAAGAGAAGATGTTGTTACGCCATGGAGAGAATGACTTCAGTGTCATGTACTCTACGCGTAAGAACTGTGCTCAGCTTTGGCTGGGACCCGCTGCTTTTATTAATCATGATTGCCGGCCAAATTGCAAGTTTGTATCCACAGGTCGAGACACTGCGTGTGTCAAGGTCCTGCGGGACATTGAACCAGGGGAGGAGATCTCATGTTACTATGGAGATGGCTTCTTTGGAGAAAACAATGAATTCTGTGAATGCTATACTTGTGAAAGGCGAGGCACTGGTGCTTTTAAGTCAAAAGCAGGACTGCCTGTCGAGGTCCCAGTCATCAATAGCAAGTATGGCCTGAGGGAGACTGACAAGAGGCTCAACAGACTGAAGAAGCTGGAAGAGGGCAGTAAGAAATCAGACAGCCAGTCTGTCGCCTCTACTGAAGCAGAGTCTCAGGAACCAACCAGTGGACAGACATCATTACGGAAGAGGATGTCGCAACCCTGTCTCAAAGTGCACTGCAAAGGCAGAGCCGTGACAAGGCAAACTCGGCCAAGCACTCATACCTCTACCTCACCCCCTAAACGAAGTCAAACAACCAACTCAAGTTTACCAAAGAGACTTAAATCAAAGCCTACACAGCCTTTGTCTAAAGGAAGGAGACGGCGTCAAACAGGAGGACTGAAAACGCCCACCAGAGCGAGTGTAGGGAGCTTGAGCCTCAAGCAGTCTTGCAAAAGAGAGGCGGACAGTCGAGGACTCCCTCAGTTCTCTGGCTGCAGGGGTGGAATTAAGCCTGCTGCAGATCACGAAAACAATCAGAACTCCCCAAAGGGTGCTTCAGCCTGCAAGGGCAGCATGTCTTGTCCATACAGAACTCGCAGGTCCAGCAGGACCTCTCTCGGTGCTCTTGAGCGTGATGGCGGCAAGCGTGGCCCAAAGCCAAGTAGCACAAGCAAGGTTGCGGTTAGCACGGCCCTCAAAATGGAGCCTGACGACTTTGTTCCCACAATGCCTGGCCATCAGATTAACATCCCCAGCCTCGAGGCCAGCTGTCCCAAGAAAGGGACATGCCCAAGACGGAGGAGGACGATAAAACAGGAGGAAACAGGCACCTACATGGACGATCTTCTTCAGGAGGGTGTGCCTGACCTGCGACATGCAGCACACGCTGCTGACGTGGCGGATTGTGCCAAGGTGCCACTTGCCCTGCCAGAGCGGCGTTACGAAGGCTTGGCGGAGAGTTCCAAGGTGTCACGTCGCATGAAGGGGGGCAAGAAAAAGCGGCGCATCACACGCTACGATGCACAGCTGATTTTAGAGAACAACACAGGCATCCCCAAGCTGACACTGCGGCGGCGGcatgacagcagcagcagcaagaaGAAAGAGCATCGAGATGCCAAGGCTGTAAGACGCTCATCGAAGATCAGCATCAAGTTCAGCAAAGAGCGGGAAAGTGAGCGTGCTGGCCTGTATGTGGCCAAGCTGAACAACGGCTTTGGTCATGGACCTCACGGGAGCTCCACCAAGCTGAAGATCCAGCTAAAGCGCGAGGAGGACGTGACCTTCACAGGTTTAGTCAAGAGGGAGGAGGGTGAAGTTCTGGAGAGAGAGGTAGGAGTTCAGATGGGTCGGAACATCAAGGAGGACTCGCTGACTTCGGAAGATGAGGAGGACTACTTTGACAATGAGGATGACTTCATCCCTCTTCCACCAGCAAAACGTCTGCGGCTCATCGTGGGCAAAGATTCCATAGATATTGACATCTCCTCAAGAAGGAGAGAGGACCAGTCACTCAGACTTAATGCCTAAGCTATGTAAATAACCCTCAGTCCTACCAGTTGTGTGTTCATTTTGAATGAGTTAATTTAAATGTGGAGTAAGAATGGCAAATGTACAGTGAAATCAACACAAGATATCTTTCTCTACATTTTAATGGTGGCacttctttattgtttattctTCATGACTATAAATATTGTAGAAACTGTACAGATGTGTATGAATTCTATTTGTCAATTTAACGTGCAGAtgttaatcagtgttttgtCCAGCTTTGCAGTTTTATTCCATTAGAGGGATAGTTCAATCAACACTAAAAAGCTAACAGGGTGATGAAAACCCATAGCTGGGGTGGTCTGATTTTCATTTCTAACTTGCCCTGCAGACCTTCAATCATAATTGGGCATTTTAGCATGTTTTGGTGGAACTATTCCTTTCACATCTCAGTCTGGTGAGAGGTAAAAGGGCTGGAAACTGTTCATCTATTTTCAGAAACACAATGCATGCGTTCACCTCCGAAGCTAGCTATCAGTTTTTGAGTTAAAACAGCAGCAGTATGCAGGGTCTTGTTTGACTCAATGTGTCTAAAGGGAATATTAAAGAAGTCAAATTGGtaaactggttaaaaaaaaaaaaagaaagaaggaaaaatctCCCTACTGGACTCGTGTTT
>XM_026927226.2
GAACACCGGAGCTGAGGGAGCTGAAGAGCTGAGAGCtgaagagcagctctgacagggaGAGGATGTTGTTGCTATGCACGCCGGCGAGCTGCGCACTCACACCAGTGGGCATTTAAAGGGAAATAACAACGCGCTCTTTGTACACATCCAAGTTTTCGCAGGATTTCATAGTATTTGCTAAACTGTCACTGTGGGCTTCTGTGAAAGGTCATTTGGACTCTCTGTGGATTTAGTAACAGCGAGCATCAGACTAGATGCCAGGAACAATAGGTGGAAGCAGGATTGAAAATTAAGCTCTGCACCATATATCCTAATTGCCCTGTAAGCGGGAAATAAAACCGCTCCTCGCATGTTGCTGATGATTTCTCATAAGTACATAGAAGCTAAATGAGCCTTCACCAGAAAGCCTGCTGGTATGAAGTAGATGGGAGAATCCAAGAACATGGTGCTGAATGGAAGGAGACATGGCAGTAGGTTCTCCAGCAATCAGCCCGTTGGGAAGACCAGGCTGCAGAATGGCCAGAGGGCCCACCTGCGCCAGAGCAAAAGCTCCCCTAGTGGCAGAAGATGCAGCCGGCGTGTCAGTGGTGCAGCCCCAGAGCCAGAGAGGCGCCATGTGCCCTCATCAGGGATGACGGCTAAGGAGCTGTGTGAATATGACGACTTGTCCACCAGCCTGATTCTGGACTCTTACTTGGGTTTTCAGACTCACAAGATGAATACGAGATTTCGCCCAATCAAAGGTCGACAGTCGGAGCTTAGAGAAGTGATTGAAAGCTTCAAGAAGAATGACAACCTGGAAAAAGCTTTCCAGGCTTTGACCTCTGCAGACTGGAGAAGACATCACTTTCTCAATAAGACAAAGGCCCAGGAGAAGCTGTTCAAAGCACATGTCTTTGTTTACTTGCGTATGTTTGCAGCAGACAGTGGGTTTGAGATTCTTCCATGCAATCGCTATTCCTCTGAGCAAAATGGAGCCAAAATTGTAGCAACAAAAGACTGGAAAAGGAACGATGAAATTGAACACCTTGTGGGTTGCATTGCTGAGCTGTCTGCTAATGAAGAGAAGATGTTGTTACGCCATGGAGAGAATGACTTCAGTGTCATGTACTCTACGCGTAAGAACTGTGCTCAGCTTTGGCTGGGACCCGCTGCTTTTATTAATCATGATTGCCGGCCAAATTGCAAGTTTGTATCCACAGGTCGAGACACTGCGTGTGTCAAGGTCCTGCGGGACATTGAACCAGGGGAGGAGATCTCATGTTACTATGGAGATGGCTTCTTTGGAGAAAACAATGAATTCTGTGAATGCTATACTTGTGAAAGGCGAGGCACTGGTGCTTTTAAGTCAAAAGCAGGACTGCCTGTCGAGGTCCCAGTCATCAATAGCAAGTATGGCCTGAGGGAGACTGACAAGAGGCTCAACAGACTGAAGAAGCTGGAAGAGGGCAGTAAGAAATCAGACAGCCAGTCTGTCGCCTCTACTGAAGCAGAGTCTCAGGAACCAACCAGTGGACAGACATCATTACGGAAGAGGATGTCGCAACCCTGTCTCAAAGTGCACTGCAAAGGCAGAGCCGTGACAAGGCAAACTCGGCCAAGCACTCATACCTCTACCTCACCCCCTAAACGAAGTCAAACAACCAACTCAAGTTTACCAAAGAGACTTAAATCAAAGCCTACACAGCCTTTGTCTAAAGGAAGGAGACGGCGTCAAACAGGAGGACTGAAAACGCCCACCAGAGCGAGTGTAGGGAGCTTGAGCCTCAAGCAGTCTTGCAAAAGAGAGGCGGACAGTCGAGGACTCCCTCAGTTCTCTGGCTGCAGGGGTGGAATTAAGCCTGCTGCAGATCACGAAAACAATCAGAACTCCCCAAAGGGTGCTTCAGCCTGCAAGGGCAGCATGTCTTGTCCATACAGAACTCGCAGGTCCAGCAGGACCTCTCTCGGTGCTCTTGAGCGTGATGGCGGCAAGCGTGGCCCAAAGCCAAGTAGCACAAGCAAGGTTGCGGTTAGCACGGCCCTCAAAATGGAGCCTGACGACTTTGTTCCCACAATGCCTGGCCATCAGATTAACATCCCCAGCCTCGAGGCCAGCTGTCCCAAGAAAGGGACATGCCCAAGACGGAGGAGGACGATAAAACAGGAGGAAACAGGCACCTACATGGACGATCTTCTTCAGGAGGGTGTGCCTGACCTGCGACATGCAGCACACGCTGCTGACGTGGCGGATTGTGCCAAGGTGCCACTTGCCCTGCCAGAGCGGCGTTACGAAGGCTTGGCGGAGAGTTCCAAGGTGTCACGTCGCATGAAGGGGGGCAAGAAAAAGCGGCGCATCACACGCTACGATGCACAGCTGATTTTAGAGAACAACACAGGCATCCCCAAGCTGACACTGCGGCGGCGGcatgacagcagcagcagcaagaaGAAAGAGCATCGAGATGCCAAGGCTGTAAGACGCTCATCGAAGATCAGCATCAAGTTCAGCAAAGAGCGGGAAAGTGAGCGTGCTGGCCTGTATGTGGCCAAGCTGAACAACGGCTTTGGTCATGGACCTCACGGGAGCTCCACCAAGCTGAAGATCCAGCTAAAGCGCGAGGAGGACGTGACCTTCACAGGTTTAGTCAAGAGGGAGGAGGGTGAAGTTCTGGAGAGAGAGGTAGGAGTTCAGATGGGTCGGAACATCAAGGAGGACTCGCTGACTTCGGAAGATGAGGAGGACTACTTTGACAATGAGGATGACTTCATCCCTCTTCCACCAGCAAAACGTCTGCGGCTCATCGTGGGCAAAGATTCCATAGATATTGACATCTCCTCAAGAAGGAGAGAGGACCAGTCACTCAGACTTAATGCCTAAGCTATGTAAATAACCCTCAGTCCTACCAGTTGTGTGTTCATTTTGAATGAGTTAATTTAAATGTGGAGTAAGAATGGCAAATGTACAGTGAAATCAACACAAGATATCTTTCTCTACATTTTAATGGTGGCacttctttattgtttattctTCATGACTATAAATATTGTAGAAACTGTACAGATGTGTATGAATTCTATTTGTCAATTTAACGTGCAGAtgttaatcagtgttttgtCCAGCTTTGCAGTTTTATTCCATTAGAGGGATAGTTCAATCAACACTAAAAAGCTAACAGGGTGATGAAAACCCATAGCTGGGGTGGTCTGATTTTCATTTCTAACTTGCCCTGCAGACCTTCAATCATAATTGGGCATTTTAGCATGTTTTGGTGGAACTATTCCTTTCACATCTCAGTCTGGTGAGAGGTAAAAGGGCTGGAAACTGTTCATCTATTTTCAGAAACACAATGCATGCGTTCACCTCCGAAGCTAGCTATCAGTTTTTGAGTTAAAACAGCAGCAGTATGCAGGGTCTTGTTTGACTCAATGTGTCTAAAGGGAATATTAAAGAAGTCAAATTGGtaaactggttaaaaaaaaaaaaagaaagaaggaaaaatctCCCTACTGGACTCGTGTTT

Function

symbol description
kmt5b Predicted to enable S-adenosyl-L-methionine binding activity; chromatin binding activity; and histone methyltransferase activity (H4-K20 specific). Acts upstream of or within histone H4-K20 methylation and regulation of growth. Predicted to be located in chromosome. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 51. Orthologous to human KMT5B (lysine methyltransferase 5B).

NR:

description
histone-lysine N-methyltransferase KMT5B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0034773 histone H4-K20 trimethylation biological_process
GO:0040014 regulation of multicellular organism growth biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0042799 histone methyltransferase activity (H4-K20 specific) molecular_function

KEGG:

id description
K11429 SUV420H; [histone H4]-N-methyl-L-lysine20 N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927225.2 True 3694 mRNA 0.48 10 14676544 14686478
XM_026927226.2 False 3503 mRNA 0.48 10 14676544 14686478

Neighbor

gene id symbol gene type direction distance location
arpin arpin coding upstream 19407 14653915 ~ 14657137 (+)
fam169b fam169b coding upstream 27577 14640960 ~ 14648967 (+)
pgpep1l pgpep1l coding upstream 143286 14528876 ~ 14533258 (+)
cftr cftr,LOC107738689,LOC107596947,LOC107583749 coding upstream 223468 14426532 ~ 14453076 (+)
bida NA coding upstream 311739 14355893 ~ 14364805 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368 coding downstream 9299 14695777 ~ 14709427 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding downstream 98462 14784940 ~ 14877479 (+)
necab2 necab2,LOC107672281,LOC106573751 coding downstream 198778 14885256 ~ 14969007 (+)
ranbp10 ranbp10,LOC107583731 coding downstream 444787 15131265 ~ 15170919 (+)
ripor1 fam65a coding downstream 528572 15215050 ~ 15291450 (+)
G99362 NA non-coding upstream 45183 14630335 ~ 14631361 (+)
G99276 ighmbp2 non-coding upstream 357890 14317597 ~ 14318654 (+)
G99261 NA non-coding upstream 414027 14261441 ~ 14262517 (+)
G99260 kif23 non-coding upstream 415802 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 686391 13989942 ~ 13990153 (+)
G99516 LOC108263939 non-coding downstream 39140 14725618 ~ 14725938 (+)
G99518 NA non-coding downstream 43506 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 340009 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 368789 15055267 ~ 15058771 (+)
G99766 NA non-coding downstream 484854 15171332 ~ 15173435 (+)
G99341 synm other upstream 152064 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 634092 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 720193 13932539 ~ 13956351 (+)
G98972 NA other upstream 887154 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 960778 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 614004 15300482 ~ 15346146 (+)
G100306 NA other downstream 1662979 16349457 ~ 16349787 (+)
G100345 NA other downstream 1913779 16600257 ~ 16601067 (+)
rgma NA other downstream 1971123 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2713948 17400426 ~ 17443468 (+)

Expression


Co-expression Network