slco3a1 (slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030)


Basic Information

Item Value
gene id slco3a1
gene name slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16764695 ~ 16816272 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927242.2
CCAGTGGTGTAGTGTGTACGACAGGaagccagcagcagcagagccGCACTGGATCTAAACACGCATAGCGGGGTGCAGTTGGAAGCCCTGACCATTTTTAGACGAATCGAAGCCGCTACatgacaaacaaaaaatgcagctaaaGGAAGCCGGCGTTGGATCTTCAGATTCCTGAAGCGCTCCCGCTTGCCTGTTTTGCCTCCTCATTCATCGTTGTTGGCGGTTCAATGAGCGCAGACAGTCACACCGCTAAACTACAGGGCTCTGACTAGAAATAGTCGCACTCGCCCATTTAAGCCGAAAGACTACGGAAAAGGCAGCTTAAAGAGGCTGGGGAAACGTTTCTGGTGTCCTATGTTGATCCGTTTGGTTCCTAAGCCAAGCCTCTAAGCTCAGCGATTTTGCCAGGGCAGGTGAAAAGGCGGAGGAGCTCGGACATGagctccccacacacacagcgagaggacacgaataaaaaaacatcatgtttttCTAACATCAAAATATTTCTAGTGTCGGAATGTGCACTGATGCTGGCGCAGGGGACAGTCGGCGCGTACTTGGTGAGTGTCCTGACTACGCTGGAGCGCCGCTTTAACCTGCAGAGTGCTGACGTGGGTGTGATTGCCAGCAGCTTTGAGATTGGCAACCTGGCGCTCATACTGTTTGTCAGCTATTTTGGCGCCAGGGCTCACCGACCACGTCTGATCGGCTGTGGTGGAATTGTCATGGCATTGGGTGCGCTTCTATCTGCACTGCCTGAGTTTCTCACCAACCAGTATGAGTACAAAAGCACTGAAGTGTGGCGGAAGGAGCCAGGACGGGACATGTGCTCCAATGTGTCAAGGAGAGATGTGGAAGATGGTGGCCTATGCAGCAACAAAGCCAACACCAACATGATGTACCTGCTGCTGATTGGTGCCCAAGTGCTACTGGGAATTGGAGCGACCCCCGTACAGCCTCTGGGAGTGTCCTATATAGATGACCATGTGAGGAAAAAAGACTCTTCCCTTTATATTGGTATATTATTCTCAACCTTGGTTTTTGGACCTGCTTGTGGCTTCATCCTTGGTTCAGTCTGCACCAAATTCTATGTGGATGCTGTCTTTGTTGACACCACCAAGCTGGACATCACCCCGGATGACCCTCGCTGGATCGGAGCCTGGTGGGGAGGCTTCCTCCTCTGTGGGgctttactttttttctccGCTATCTTCATGTTTGGTTTCCCCTCATCTCTGTCAGAGCGATATGGGAACAGCAGGACAGAAAGTGACCAGCCCATGCTGCCTGCATCTCAGAGTTATGAGCATCCAAAGCCAAGTAATGGTGTCCTGCACAACCATCAACCTGACAGCTCCTGCTGTGATCAGCTTCGAGtTATTCCCAAGGTGACTAAACACCTGCTGTCTAACCCGGTGTTCACCTGTATTGTCCTTGCTGCATGTATGGAGATTGCTGTAGTTGCTGGTTTTGCTGCCTTCTTGGGCAAGTACTTGGAGCAGCAGTTTAATCTTACTACCACCTCGGCCAATCAGCTTCTGGGTATGACAGCCATCCCATGTGCATGTCTGGGGATTTTTATGGGCGGTCTTTTGGTGAAGAAGCTGAATCTGTGTGCTCTGGGTGCTGTTCGGATGGCCATGTTGGTCAACCTGATTTCCACCGCCTGCTATGTGTCTTTCCTCTTCCTTGGCTGTGACACAGGCCCTGTTGCTGGTGTGACCGTCGCCTATGGCAATGAaacACTGCAGCCAGGCCAAACACCAGAAGCTCCATGCATTAGTAACTGTAACTGCTACACATCATCGGTTAGCCCTGTTTGTGGCTCTAACGGAATCACGTACCTGTCCTCCTGCTTCGCTGGCTGCATCAAATCCAATAGCACTGGAGTGCTTCCTCGACTGGCTCAGCCCATGCAGAACCTGACAGGGTGTGCATGCATTTCTGGTGATGGCATTCCCTCCACAGTTGTGCCAGGCAAATGCCCAAGTCCTGGGTGCCAGGAGGCTTTCCTCATTTTCCTGTGTGTGATCTGTGCCTGCAGCATGATAGGAGCCATGGCTCAGACACCCTCAGTTATCATCCTCATCAGGACAGTCAGCCCAGAGTTGAAATCTTATGCACTTGGCGTTCTGTTTCTCTTATTGCGACTACTGGGATTCATCCCACCTCCTTTGATCTTTGGTGTGGGGATCGATTCCACCTGCCTGTTCTGGAGCAGCGAGTGCAACACAAAGGGTGCCTGCATGCTATATGACAACGTGGCCTATCGCCACCTCTATGTGAGCTTAGCCATTGTGCTAAAAATAATTGCCTTCCTGCTTTACAGCACCACATGGCAGTGTTTACGCTGCAACTACAAGAAGTACATCAAGAATAATGAGGTGTATGTGACATCCACTGAAATTTTCTCTTCTGATATTAATTTGGATAGCTTGGGCAAAGACATTAACAGGACAAAATTTATATACAACCTGGAAGATCATGAGTGGTGTGAAAACATGGAATCTGTTTTATAGTGGCTGGTACTTGttaatgcataaatatgcatCTTCTGAAGGATCACATTggttgtttattaatttttttcaaggaTAGCATTTGATTTCCTCCTTCTATGGTGATGTGTTTAAGGTGTCACTGGCCACTTTAGGAGACTGTTGCACTTTTTGAATTAATGGTAATCTTTTTTGGTCCATTGTGGTTCTTAGAAGATGCTTCAGAGGATGTACATTGTTCAGTTCCAGtgatgtacagtcaggtccataaatatttggacattgacatgGTTATTAtttgtctaccacagtatattgaagTTGAAATTAAGTAATGAGAATGAGTTCAAAATGcagaattacagcactttttataacTGCCCCCTTTTTAAGGGACAAAAAGTAATTgcacaaactaacaatcataaattaaattgtgatTTTAATACTCGGTTGCAAATTATTTGCAGTGAATGACTGCCTGAAGCCTGGAACCcatcaccagatgctgggtttcttccctactgatgctctgccaggcctttacagCAACCGTTTTCAgctcctgcttgttcttggggcatatGATGCATTTGGCTGAATCGGAGCAGATAATATTCCCTATATACAACAGAATGCATCCTGCTGTTTTTGTCAGCTGTCACATCAATAAAtaccagttccactggcagccacacatgcccatgccataagatgaggtcatatgctttggatcatgagcagttccttcccttctccaaatatttctcttcccatcattgtGGTTCAcattgatctttgtctcatctatCTATagtatattgttccagaactgtacaggcttttgtttagattttttggGGAAAACTTTAATCTGATCTTCCTGGTTTTGAGGtttaccaatggtttacatcttgtggtaaaccctctgtattcactctggtgaagacTTCTCTTGAtttttgactttgacacagatacgcctacctcctggagggtgttcttcATCTGGACAACTGGTGTGAAGAGGTTTTTCTTCACTATGGATAGAATTCTTCTGTTATTCACCAAGTTGTTTTCCATGCCTTTTGGTGTTCAAGAGCTCACCAGTAtgttctttttaagaatgtaccaaatagttgatttggccgCATCTactgtttttgctatctctgattggtttgttttgattttttagtCTAATGAttgcttgcttcactggcagtgacagctctttggacttaaTATTGAGAATTAACAGCAATAGATTCCAAATGCCCATCAAccctagaccttttatctgcttactaagtgaaataatgaggggaaaagtaatacaatataataatataatacctGGActtggaacagctgagcagccaattgtccaGTTACTTCTGGTCCCTTAAAAAGATAGGGACCacaagtgctgtaattcctacaccgctCACCCGATTTGGATGTAGGTACcctgaaattaaagctgaaagtttgcACATtgataatattgatattaacaCATTGctaatcattatttaaattcaactccaatatactatGGTAGACACCTAAAATACCAATATCtttgtcagtgtccaaatatttatggccCTGACTGTATGTTATAGTTGGTAGTTGAAGACAGCTGCTGTATAACTACAAACTAGGCTGGTAATAACCTTGACTTAGATCAGTTTTCCATACTAAGTTTCAATAAGTATaccataattttatttttctcagtttGTATGAAGAAGTCACATGAAACTATTTAACAGAGCAGTTAGGTTGATAACctgaataaaaactgaaatagcaataaaaatagctatatatatatatat
>XM_026927243.2
CCAGTGGTGTAGTGTGTACGACAGGaagccagcagcagcagagccGCACTGGATCTAAACACGCATAGCGGGGTGCAGTTGGAAGCCCTGACCATTTTTAGACGAATCGAAGCCGCTACatgacaaacaaaaaatgcagctaaaGGAAGCCGGCGTTGGATCTTCAGATTCCTGAAGCGCTCCCGCTTGCCTGTTTTGCCTCCTCATTCATCGTTGTTGGCGGTTCAATGAGCGCAGACAGTCACACCGCTAAACTACAGGGCTCTGACTAGAAATAGTCGCACTCGCCCATTTAAGCCGAAAGACTACGGAAAAGGCAGCTTAAAGAGGCTGGGGAAACGTTTCTGGTGTCCTATGTTGATCCGTTTGGTTCCTAAGCCAAGCCTCTAAGCTCAGCGATTTTGCCAGGGCAGGTGAAAAGGCGGAGGAGCTCGGACATGagctccccacacacacagcgagaggacacgaataaaaaaacatcatgtttttCTAACATCAAAATATTTCTAGTGTCGGAATGTGCACTGATGCTGGCGCAGGGGACAGTCGGCGCGTACTTGGTGAGTGTCCTGACTACGCTGGAGCGCCGCTTTAACCTGCAGAGTGCTGACGTGGGTGTGATTGCCAGCAGCTTTGAGATTGGCAACCTGGCGCTCATACTGTTTGTCAGCTATTTTGGCGCCAGGGCTCACCGACCACGTCTGATCGGCTGTGGTGGAATTGTCATGGCATTGGGTGCGCTTCTATCTGCACTGCCTGAGTTTCTCACCAACCAGTATGAGTACAAAAGCACTGAAGTGTGGCGGAAGGAGCCAGGACGGGACATGTGCTCCAATGTGTCAAGGAGAGATGTGGAAGATGGTGGCCTATGCAGCAACAAAGCCAACACCAACATGATGTACCTGCTGCTGATTGGTGCCCAAGTGCTACTGGGAATTGGAGCGACCCCCGTACAGCCTCTGGGAGTGTCCTATATAGATGACCATGTGAGGAAAAAAGACTCTTCCCTTTATATTGGTATATTATTCTCAACCTTGGTTTTTGGACCTGCTTGTGGCTTCATCCTTGGTTCAGTCTGCACCAAATTCTATGTGGATGCTGTCTTTGTTGACACCAAGCGATATGGGAACAGCAGGACAGAAAGTGACCAGCCCATGCTGCCTGCATCTCAGAGTTATGAGCATCCAAAGCCAAGTAATGGTGTCCTGCACAACCATCAACCTGACAGCTCCTGCTGTGATCAGCTTCGAGtTATTCCCAAGGTGACTAAACACCTGCTGTCTAACCCGGTGTTCACCTGTATTGTCCTTGCTGCATGTATGGAGATTGCTGTAGTTGCTGGTTTTGCTGCCTTCTTGGGCAAGTACTTGGAGCAGCAGTTTAATCTTACTACCACCTCGGCCAATCAGCTTCTGGGTATGACAGCCATCCCATGTGCATGTCTGGGGATTTTTATGGGCGGTCTTTTGGTGAAGAAGCTGAATCTGTGTGCTCTGGGTGCTGTTCGGATGGCCATGTTGGTCAACCTGATTTCCACCGCCTGCTATGTGTCTTTCCTCTTCCTTGGCTGTGACACAGGCCCTGTTGCTGGTGTGACCGTCGCCTATGGCAATGAaacACTGCAGCCAGGCCAAACACCAGAAGCTCCATGCATTAGTAACTGTAACTGCTACACATCATCGGTTAGCCCTGTTTGTGGCTCTAACGGAATCACGTACCTGTCCTCCTGCTTCGCTGGCTGCATCAAATCCAATAGCACTGGAGTGCTTCCTCGACTGGCTCAGCCCATGCAGAACCTGACAGGGTGTGCATGCATTTCTGGTGATGGCATTCCCTCCACAGTTGTGCCAGGCAAATGCCCAAGTCCTGGGTGCCAGGAGGCTTTCCTCATTTTCCTGTGTGTGATCTGTGCCTGCAGCATGATAGGAGCCATGGCTCAGACACCCTCAGTTATCATCCTCATCAGGACAGTCAGCCCAGAGTTGAAATCTTATGCACTTGGCGTTCTGTTTCTCTTATTGCGACTACTGGGATTCATCCCACCTCCTTTGATCTTTGGTGTGGGGATCGATTCCACCTGCCTGTTCTGGAGCAGCGAGTGCAACACAAAGGGTGCCTGCATGCTATATGACAACGTGGCCTATCGCCACCTCTATGTGAGCTTAGCCATTGTGCTAAAAATAATTGCCTTCCTGCTTTACAGCACCACATGGCAGTGTTTACGCTGCAACTACAAGAAGTACATCAAGAATAATGAGGTGTATGTGACATCCACTGAAATTTTCTCTTCTGATATTAATTTGGATAGCTTGGGCAAAGACATTAACAGGACAAAATTTATATACAACCTGGAAGATCATGAGTGGTGTGAAAACATGGAATCTGTTTTATAG

Function

symbol description
slco3a1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in prostaglandin transport and sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including female organism; gill; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLCO3A1 (solute carrier organic anion transporter family member 3A1).

NR:

description
PREDICTED: solute carrier organic anion transporter family member 3A1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14353 SLCO3A; solute carrier organic anion transporter family, member 3A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927242.2 True 4345 mRNA 0.44 10 16764695 16816272
XM_026927243.2 False 2396 mRNA 0.50 10 16764695 16814449

Neighbor

gene id symbol gene type direction distance location
LOC113534621 NA coding upstream 253716 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 504522 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 908583 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 955579 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 1092361 15660992 ~ 15672334 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 22603 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 162663 16978935 ~ 16983976 (+)
blm blm coding downstream 225085 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 546853 17363125 ~ 17378340 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 714162 17530434 ~ 17541653 (+)
G100362 NA non-coding upstream 4161 16760311 ~ 16760534 (+)
G100360 NA non-coding upstream 6352 16758139 ~ 16758343 (+)
LOC117597522 NA non-coding upstream 8716 16751007 ~ 16755979 (+)
G100355 NA non-coding upstream 94670 16669387 ~ 16670025 (+)
G100341 NA non-coding upstream 179875 16584344 ~ 16584820 (+)
G100370 NA non-coding downstream 6096 16822368 ~ 16823102 (+)
G100379 NA non-coding downstream 122463 16938735 ~ 16939728 (+)
G100480 NA non-coding downstream 155558 16971830 ~ 16972238 (+)
G100499 NA non-coding downstream 194443 17010715 ~ 17024228 (+)
LOC117597540 NA non-coding downstream 221779 17038051 ~ 17039276 (+)
rgma NA other upstream 83902 16657601 ~ 16680793 (+)
G100345 NA other upstream 163628 16600257 ~ 16601067 (+)
G100306 NA other upstream 414908 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1418549 15300482 ~ 15346146 (+)
G99341 synm other upstream 2240215 14520801 ~ 14524480 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 584154 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 673274 17489546 ~ 17493092 (+)
G101403 NA other downstream 1735174 18551446 ~ 18551724 (+)
G101419 NA other downstream 1782442 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1922071 18738343 ~ 18739998 (+)

Expression


Co-expression Network