LOC113534448


Basic Information

Item Value
gene id LOC113534448
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12267333 ~ 12269117 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927264.2
TGTCACGAAGTGAGGCAGAAAAGAACCGGACACTAGCAGAGGCTCGGGCTctagagagcaaaagagagagagatacagcaATGGCTGACAAAGTACAACTCAGTGAAGAGCTGCACAATTTGAGTAAAGAGcacaaaaacatgcagctgCTTCTGGcacagactgaaaaaaattactttgaGGCCATGTTGAAACTGGAGAGGGTGTCTGCAGAGAAACAATTTCTCCTAGAGGAGAGCAAGGGTTTGGAGGACGAGAGGAACACACTACGGCAGAAATTCAAAGAGCTGACTGACGAGAATGCAATAATCAAAGAAAAGGAGGTCAGCTGGAGACGCAAGGCTGCTGCCGCTGAGGAGCAGAGCGAGAGAGCCattaaacagcagcagcaggctgaGCATGAGAGCAGACTGgccaaaagagagaaagacaaatcaGTTAGTGAGTGTCTCAGCTGGCGGGAAAAACACCAAGCTCTAGCAGACATCTTAAGAGCACAGGAGGACCTCATATCACAGAGGCAGAACAAAGCAtgcCAAGCAaacataaaaagctactttctTTGTATGACTGAAAGTGACCAGAGGATTAAGATCCTAAAGAACTGTGATGGAACTCCAAGAAACTTCACGGAAGGAGATCCTGTGTATATTTCAACAGCTCAAGCCAGTGATGAGGATTCAGAAAAGAGCTCAGGAAGGACCCTTCTCAGGGTCGCAGCTCCCACAGCAGGAAGAGACTCTGGACCCACTCACTTCAGTGAACTGTCACTGATGGGAGCAGATCCCCATGACAGCAGCACTCTGAGGAGAAGTAGAAAAGTGGTTGAGTACTTCTGGATTCCCACTGACCAAGAATAATCCGTTATCATCACTGATTTAGGGGGGGGGGAAGGTATGAAGCCAACATGGTTACACACTACCATGTACATGTTGGGATATTACTATTATAAAACTGCCTTACATAGTGTGATAAGATCACACCAATGTACAAGATCATGCCAATAATTTCTGTGGCAGACAAGATCAGTTATATCCACATGCTgcaaaatatattatacaattAACATTCTCTCATGATGGTGAGAATGAAGATGACATTCTGCTTTTTGGTGACTTTTTATTTGGCCCGTCTTCTGTCGCCAAAAACATCACATGAACTACCGAGTTTAACTTGCGATCAAGGAATTCTTTCACGATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927264.2 True 1201 mRNA 0.45 6 12267333 12269117

Neighbor

gene id symbol gene type direction distance location
mgat4c mgat4c,LOC107740326,LOC107553950 coding downstream 75972 12067030 ~ 12191361 (-)
rassf9 rassf9 coding downstream 219582 12035974 ~ 12047751 (-)
slc6a15 slc6a15,LOC107553966,LOC107740320,LOC107672330,LOC106573109 coding downstream 341076 11905608 ~ 11926257 (-)
si:ch211-219a15.3 LOC108264201 coding downstream 591480 11672381 ~ 11675853 (-)
si:ch211-245j22.3 si:ch211-245j22.3,LOC108264234,LOC105895582,LOC104937698,LOC107749310,LOC108425778 coding downstream 685449 11578245 ~ 11581884 (-)
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding upstream 13180 12282297 ~ 12303697 (-)
swap70b swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307 coding upstream 94442 12363559 ~ 12385353 (-)
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding upstream 119756 12388873 ~ 12395662 (-)
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding upstream 189398 12458515 ~ 12463241 (-)
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding upstream 197029 12466146 ~ 12476898 (-)
G97932 NA non-coding downstream 570668 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 574254 11690997 ~ 11693079 (-)
G97831 NA non-coding downstream 790219 11396116 ~ 11477114 (-)
G97607 NA non-coding downstream 1076493 11190641 ~ 11190840 (-)
G97601 NA non-coding downstream 1079310 11187495 ~ 11188023 (-)
G98342 NA non-coding upstream 5158 12274275 ~ 12275411 (-)
G98343 NA non-coding upstream 6605 12275722 ~ 12276229 (-)
G98383 NA non-coding upstream 208786 12477903 ~ 12478277 (-)
G98551 NA non-coding upstream 442977 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 459327 12728444 ~ 12729493 (-)
sspn sspn other downstream 389129 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 497347 11752525 ~ 11769986 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other downstream 656369 11586057 ~ 11610964 (-)
pdf pdf,spata2l other downstream 1087725 11172687 ~ 11179608 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 1685431 10527110 ~ 10581902 (-)
admb NA other upstream 42705 12311822 ~ 12345452 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 127390 12396507 ~ 12405281 (-)
akip1 LOC108264820 other upstream 151320 12420437 ~ 12423978 (-)
G98770 NA other upstream 776706 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1281563 13550680 ~ 13562574 (-)

Expression


Co-expression Network