LOC113534453 (LOC108264337,LOC108264339)


Basic Information

Item Value
gene id LOC113534453
gene name LOC108264337,LOC108264339
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 7146500 ~ 7157488 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927273.2
tgtgtatacatatatacaactGTATGCGTCCTTCTTTTTTAAGTCTGGGAAAAAGTATAGACTACAGCTCAGGTGTCAGACTCAGCAGTGGGGCTAGGAAGCAAAGATACGGCAAAGAAGGTGTTACACTTCAGGCAGCATAGCAGGAGATAGCACTTCATGAAGAGatgctgaaaaacagaaaactagAGGCGAGGGGGCTTTGGGAGAGTAAAAGAGAATTCCTTCTGGCTGTGGCAGGAGACATAGTAGGTCTGGGCAACGTTTGGAGATTCCCCTATCTCTGCTACAGGAATGGAGGAGGGGTGTTCTTGGTGCCCTACTTGGTGCTTGCTGTAACCTGTGGTTTGCCCCTATTCCTTCTGGAAACTGCTATGGGACAATACACACAAGAGGGGGGCATCACATGCTGGCAACAAATCTGCCCACTGGCTGAGGGTGTTGGCTATGCAGGCCAGGTGATTCAGCTGTATGGCTGCATGTGCTACATCATAATCCTGGCCTGGGCACTGCTCTATTTGGTCTTATCCTTCAAATCTCAGCTTCCCTGGGCCAGCTGTGACAACATCTGGAACACAAACAGCTGTATTGCTGTTGTAAATAATGCCAACTGGACAAGACAGGTCAACTCAACATCAGCAGCCACTGAGTTTTGGGAGCGTAGAGTGCTCACTATTTCTAAAGGTATTGAAGAAGTAGGTAACATCAACTGGGAGATTCTCCTGTGTCTAATCGCCATGTGGATCATATGCTATTTCTCTATATGGAAAGGAGTAAAGTCCACTGGGAAGGTGGTGTATTTCACAGCCACGCTCCCTTATGTGATGCTGCTGGTGTTGCTGATTCGTGGACTGACTCTCCCTGGAGCCATGCAGGGTGTTATTTTTTACCTCTATCCCGACTTCCACAGACTGTTGGAGCCTCAGGTATGGATGGAGGCAGCCAGTCAAATTAGCTACTCTTATAGTATAGGTGTGGGAATATTGACTGTGCTAGGCAGCTACAACCAATACAACAACAACTGCTACAGGGATTGCTTTTGGCTGTGTCTGCTGAACAGTGGCACCAGTTTTGTAGCAGGCTTTGCAGTATTCTCAGTTCTGGGCTTCATGGCTCATGTGCAAGGTGTTCCTATAGAGGATGTGGCAGAGTCAGGTCCTGGCCTAGCTTTTGTAGCTTATCCTCAGGCCGTTGCTTTGATGCCTCTGCCTCAGCTGTGGGCTGTATTCTTCTTCATTATGATTATTCTTCTTGGTCTGGACACACAGTTTCTTGCGATGGAGGTGATCATTACATCAGTGACGGATGTGTTTCCGAAAGTGCTACGTAGAACTGGATGCAGAGAAATCTTCCTGCTTCTTTTCTGTATTATCTGCTTCTTCAGCCAATTAATCATGGTCACAGAGGGTGGCATGTACGTGTTTCAGCTGTTTGACTACTATGCCTGTAATGGAGCCTGCATCTTCTTCCTTTCTGTGTTTCAGTCCCTGGCAGTGGGCTGGGCCTTTGGGGCTGAACGAATGTGTGATGCCATTGAAGACATGACAGGGTCATACCCTAACGCCATCTTTAGGCTGTGCTGGAAATATATTACCCCATTTGTTTTGCTGGTATCTTTCATATATTCTATGGTGGAATACCAGCCTCTGACGTTTAACCGCTGGTATGTGTACCCAGCCTGGGCATACGGGCTGGGCTGGCTGATGGCCCTCTCCTCCATCCTGCTGGTTCCTGCATGGGCACTGGGCCGCTTGTGGAAAGCAAAAGGGAACCTCAGAGAGCGCTGGTGTCAACTGTGCCGTCCTGAGAGAAACTTACCTTTGGACCAGAAGCAGAGAGCTAAAGGACAGTTACTGACATCAGCTGTTTGACAAAGCCAGCAACACTGAGGAATGTAAACTATACAATACTGAACAAATAGTGCATTTGTCTTTTCATATACAATTAGAGAAATGACATTCCCTAATTCTATATATAGAAGACAAATAATACTCTGAATTACCAGGGGTCTACCTAATGGTACATATTTACTCTGTGTAAATTATGAAAACGTTTACTGCTGCATGAAACAATATTTGAATTTCttgatgatgaaaaaaaaaaaaaaaaaaactactgtgACCTGTGGCTTAATGtatcaaaacaaaaagacatgaGTTAACTCATTTGTGCCAAAA
>XR_003403498.2
GActtgtgtgtatacatatatacaactGTATGCGTCCTTCTTTTTTAAGTCTGGGAAAAAGTATAGACTACAGCTCAGGTGTCAGACTCAGCAGTGGGGCTAGGAAGCAAAGATACGGCAAAGAAGGTGTTACACTTCAGGCAGCATAGCAGGAGATAGCACTTCATGAAGAGatgctgaaaaacagaaaactagAGGCGAGGGGGCTTTGGGAGAGTAAAAGAGAATTCCTTCTGGCTGTGGCAGGAGACATAGTAGGTCTGGGCAACGTTTGGAGATTCCCCTATCTCTGCTACAGGAATGGAGGAGGGGTGTTCTTGGTGCCCTACTTGGTGCTTGCTGTAACCTGTGGTTTGCCCCTATTCCTTCTGGAAACTGCTATGGGACAATACACACAAGAGGGGGGCATCACATGCTGGCAACAAATCTGCCCACTGGCTGAGGGTGTTGGCTATGCAGGCCAGGTGATTCAGCTGTATGGCTGCATGTGCTACATCATAATCCTGGCCTGGGCACTGCTCTATTTGGTCTTATCCTTCAAATCTCAGCTTCCCTGGGCCAGCTGTGACAACATCTGGAACACAAACAGCTGTATTGCTGTTGTAAATAATGCCAACTGGACAAGACAGGTCAACTCAACATCAGCAGCCACTGAGTTTTGGGAGCGTAGAGTGCTCACTATTTCTAAAGGTATTGAAGAAGTAGGTAACATCAACTGGGAGATTCTCCTGTGTCTAATCGCCATGTGGATCATATGCTATTTCTCTATATGGAAAGGAGTAAAGTCCACTGGGAAGGTGGTGTATTTCACAGCCACGCTCCCTTATGTGATGCTGCTGGTGTTGCTGATTCGTGGACTGACTCTCCCTGGAGCCATGCAGGGTGTTATTTTTTACCTCTATCCCGACTTCCACAGACTGTTGGAGCCTCAGGTATGGATGGAGGCAGCCAGTCAAATTAGCTACTCTTATAGTATAGGTGTGGGAATATTGACTGTGCTAGGCAGCTACAACCAATACAACAACAACTGCTACAGGGATTGCTTTTGGCTGTGTCTGCTGAACAGTGGCACCAGTTTTGTAGCAGGCTTTGCAGTATTCTCAGTTCTGGGCTTCATGGCTCATGTGCAAGGTGTTCCTATAGAGGATGTGGCAGAGTCAGGTCCTGGCCTAGCTTTTGTAGCTTATCCTCAGGCCGTTGCTTTGATGCCTCTGCCTCAGCTGTGGGCTGTATTCTTCTTCATTATGATTATTCTTCTTGGTCTGGACACACAGTTTCTTGCGATGGAGGTGATCATTACATCAGTGACGGATGTGTTTCCGAAAGTGCTACGTAGAACTGGATGCAGAGAAATCTTCCTGCTTCTTTTCTGTATTATCTGCTTCTTCAGCCAATTAATCATGGTCACAGAGGGTGGCATGTACGTGTTTCAGCTGTTTGACTACTATGCCTGTAATGGAGCCTGCATCTTCTTCCTTTCTGTGTTTCAGTCCCTGGCAGTGGGCTGGGCCTTTGTGGttaaacaggaaatgagaatAATCATCAAAGAAGAGGTTCAAAACTCGGGGGAGGGTGTCCACTGGCAGTCTGGAGTGGGAGTGTCCAGGGGCTGAACGAATGTGTGATGCCATTGAAGACATGACAGGGTCATACCCTAACGCCATCTTTAGGCTGTGCTGGAAATATATTACCCCATTTGTTTTGCTGGTATCTTTCATATATTCTATGGTGGAATACCAGCCTCTGACG

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 2-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927273.2 True 2177 mRNA 0.45 14 7146500 7157482
XR_003403498.2 False 1749 misc_RNA 0.47 14 7147944 7157488

Neighbor

gene id symbol gene type direction distance location
LOC113534467 LOC108264339,LOC108264337 coding downstream 5600 7131597 ~ 7140900 (-)
LOC113534612 LOC108263907 coding downstream 20107 7122583 ~ 7126393 (-)
LOC113534708 LOC108264086,LOC108264449 coding downstream 32706 7110759 ~ 7113794 (-)
LOC113534626 LOC108264086,LOC108264449 coding downstream 54074 7089973 ~ 7092426 (-)
ets1 ets1,LOC106581098,LOC106612966 coding downstream 111270 6993136 ~ 7035230 (-)
vwa7 LOC108264336 coding upstream 1465 7158953 ~ 7172982 (-)
c6h19orf54 c4h19orf54,cunh19orf54 coding upstream 41534 7199022 ~ 7207902 (-)
tbrg1 tbrg1 coding upstream 117188 7274676 ~ 7283309 (-)
cfap45 cfap45 coding upstream 127163 7284651 ~ 7293911 (-)
trpc6b trpc6b,trpc6,LOC108264040,LOC108429885,LOC107691992,LOC107713306 coding upstream 138632 7296120 ~ 7311380 (-)
G95066 NA non-coding downstream 58459 7086511 ~ 7088041 (-)
G95072 NA non-coding downstream 143866 7001648 ~ 7002634 (-)
G94975 NA non-coding downstream 476893 6664855 ~ 6669607 (-)
G94761 NA non-coding downstream 760216 6385400 ~ 6386284 (-)
G94746 NA non-coding downstream 878710 6263752 ~ 6267790 (-)
G95227 NA non-coding upstream 170000 7327488 ~ 7327703 (-)
G95440 NA non-coding upstream 178877 7336365 ~ 7336566 (-)
G95449 NA non-coding upstream 230244 7387732 ~ 7430763 (-)
G95460 NA non-coding upstream 263140 7420628 ~ 7421851 (-)
G95482 NA non-coding upstream 321384 7478872 ~ 7479107 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 864970 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 1360069 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 1503551 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 2925893 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 2972906 4173288 ~ 4173594 (-)
shank3a shank3,shank3a other upstream 280603 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 1238324 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 2017167 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 2593394 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 2664745 9822233 ~ 9918481 (-)

Expression


Co-expression Network