ppcdc (ppcdc,LOC107583771,LOC107742893,LOC107686355,LOC107738727,LOC107672202)


Basic Information

Item Value
gene id ppcdc
gene name ppcdc,LOC107583771,LOC107742893,LOC107686355,LOC107738727,LOC107672202
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13571853 ~ 13575817 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927282.2
GTCATCAAGGTGACGTCACGTAACGGCAATGTTGACGGAAGTGAAACAAAGAGCAACAGAATTTCAGAAACACGTTTCTACATTATTCTGCTTTGCACTTTATTACCGTTGCCTGTCACAAGTTGACAAACACTTCACCAGAGTGTGATGTGGAGAAAatgtaatgtgttatttaataagAGTTTTCGGTTAACTAGCCCGTGCCATGGAGCACACTTCTGACTTTGCTAACGTTAGCTCAACGCTGAGCCTGAGTTCTGCTGCCTCCAGATTTCGCGTGCTTCTAGGTGTGACTGGTAGTGTTGCAGCACTTAAGTTACCTTTGCTGGTGTCACAACTTCTCGAAATCCCAGGGATCGATGTACGGGTAGTCACCACAGACCATGCCACCCATTTTTACAAAGTTGCTGAGGTTCCTGTCCGTGTCTACACAGACAAGGACGAGTGGGAGATGTGGAAAACACGCTCTGACCCTGTGCTACACATAGAGCTGCGACGGTGGGCAGACCTGCTAGTCATTGCTCCACTGGATGCAAACACACTCGGCAAGATAGCCAGTGGTATTTGTGACAACCTTCTGACATGCATTGTAAGAGCATGGGATATGAGTCGTCCTCTACTCTTTTGTCCTGCCATGAACACGGCCATGTGGCAGCATCCAATCACTGCCCGGCAAGTGGCCACGCTTCAGAGCTTCGGCTATGTGGAGATCCCCTGCATTTCAAAGAAGCTGGTCTGTGGAGATGAAGGCAAAGGTGCAATGGCAGAGGTGTCAACTATTGTGGATGCCATCCAACAGTATCTTCCAAGACCAGCTGTTTAAATCACAGCACAAATGGATGAACACCAAAGTTAGAATATATCTTTCTatatatgtatgaatatatataatgaataatgagtATTTCACTATGAGCACCAATCtaaattaaatctttttaaataattccataaatgtagtaaagatatttttctttaatatgtgATGCTTGAGTTCTTCAGTTGAAATAGGAAGTTTAACTAGaaattacagaataaattaCCTTTTGGATATTTTAAACAGACGAGTGTCAGATTGACAGccccttataaaaaaaaaaataaatgccaaTTGtgcaataaagtaaaaaaaatgcagctctattattgttaaaattgcaaagcattttgaaatatataatttatttaaaagtctACAACTGAGTGATGAAAGAAATCATCATAGTTTCCATTTCTCTTGAAATTTATTGTGTTTCTTGGAAGTTATTGGTCTCTCCCCCAAAATTATTGCCCAACTCTCTTTAGTTTCCCTGTCATGTTCTCAAGTTCAGTGCTTGTTTTTGATCTGTACCATCTCCCAACACATCTACCATTGTTTTACAGCCTACAGTATCAGGTATGTAGTGAAATaagatttataaatatgaaatgactgtGAGTCCTGGCTCTCTGAATGCTTTTTAGAATATGGTTTCTCATTGATTTTTAGTAGTGTTACCTATTCAAATGTGGGATTAGCTCATGTCCTGCTTCAATAAACTCCCTTATCAATCATGAGAAAGTTATATATTTGAGTGTGTATCTAAGGCTTGAATAGAGAAATTAAAGCTGTGTCATGGAGGTGTGATAATGTTAGCTTACTGAAGCCAGCATTTTgtcttcaatttttttcattattctccTGTTCAGGTTAAAACCATCAAATTTGCTGATGGTGGAATCAAAGTATTCAAATTACAGCTAGCTGAAGTTTCATATTGAAACTATATGCAAAATCAAGTATTTAGCTTTTGTAGTAATCAAATAGTAGTTTTTTTAGTAGCTACAGTACATTGtatctgtttcatttttatttgcatttattcatttcttttttatcctGGAATCTGATGTGTCATTAAACTGTGGATGAAGCTTTGATCGAA

Function

symbol description
ppcdc Predicted to enable FMN binding activity and phosphopantothenoylcysteine decarboxylase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be part of phosphopantothenoylcysteine decarboxylase complex. Orthologous to human PPCDC (phosphopantothenoylcysteine decarboxylase).

NR:

description
phosphopantothenoylcysteine decarboxylase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004633 phosphopantothenoylcysteine decarboxylase activity molecular_function

KEGG:

id description
K01598 PPCDC, coaC; phosphopantothenoylcysteine decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927282.2 True 1925 mRNA 0.38 5 13571853 13575817

Neighbor

gene id symbol gene type direction distance location
arl2bp arl2bp,LOC108264832,LOC107686354 coding downstream 45879 13522151 ~ 13525974 (-)
tgm2l LOC108264831,LOC108423869 coding downstream 66401 13494603 ~ 13505452 (-)
aars1 aars,LOC107686288,LOC107738729 coding downstream 80569 13475531 ~ 13491284 (-)
sf3b3 sf3b3 coding downstream 131051 13411360 ~ 13440802 (-)
LOC113534846 NA coding downstream 134878 13436901 ~ 13436975 (-)
ints14 vwa9,LOC107583765,LOC107596981 coding upstream 7111 13582928 ~ 13588984 (-)
dennd4a dennd4a coding upstream 36979 13612796 ~ 13643572 (-)
trnaq-cug_10 NA coding upstream 69592 13645409 ~ 13645480 (-)
megf11 megf11,LOC107596974,LOC107686294,LOC107672222 coding upstream 76241 13652058 ~ 13763456 (-)
rpl4 rpl4,LOC107718306 coding upstream 210330 13786147 ~ 13789542 (-)
LOC117597528 NA non-coding downstream 253845 13311395 ~ 13318008 (-)
G98790 NA non-coding downstream 389303 13182343 ~ 13182550 (-)
G98776 NA non-coding downstream 436680 13129200 ~ 13135173 (-)
G98767 NA non-coding downstream 543256 13027458 ~ 13028597 (-)
G98607 NA non-coding downstream 733311 12838220 ~ 12838542 (-)
G99118 LOC108280567 non-coding upstream 69758 13645575 ~ 13647786 (-)
G99134 NA non-coding upstream 157134 13732951 ~ 13768470 (-)
LOC113534845 NA non-coding upstream 189109 13764926 ~ 13765056 (-)
LOC113534347 NA non-coding upstream 206958 13782775 ~ 13784737 (-)
LOC113534852 NA non-coding upstream 207738 13783555 ~ 13783624 (-)
c6h15orf39 c4h15orf39 other downstream 9279 13550680 ~ 13562574 (-)
G98770 NA other downstream 519542 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 1147875 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1166572 12396507 ~ 12405281 (-)
admb NA other downstream 1226401 12311822 ~ 12345452 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 760119 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1771349 15347166 ~ 15357563 (-)
G101178 NA other upstream 4611630 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 6404252 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 6820049 20395866 ~ 20416574 (-)

Expression


Co-expression Network