sf3b3 (sf3b3)


Basic Information

Item Value
gene id sf3b3
gene name sf3b3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13411360 ~ 13440802 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927304.2
ACAGCTAACACGCGCCTTGGAGAACCACAAGGACCCAAATCGTTAGAGCGGCGTTTGCAAAATACCAACCGGACAAGTTAATATTGTGAATGAGTTCTTCATCTGTCGATATCTTCACCATCCTGATAGTAAACTCGGTGAAGAGAACTTTATCCATCCAGAGCTGAAGGTCCAGAGACATTGATCATGTTTCTGTACAATCTGACCTTGCAGCGTGCTACAGGCATCACTCATGCCATCCATGGCAACTTCTCAGGTACCAAGCAGCAGGAGATTGTTGTTTCTCGAGGGAAGATTCTGGAGCTGCTGCGCCCCGATGCAAACACTGGCAAAGTTCACACACTTCTCACCATGGAGGTGTTTGGGATAGTCCGCTCTCTCATGGCCTTCAGGCTGACTGGTGGCACAAAAGACTACATCGTGGTGGGCAGTGATTCAGGTCGTATCGTTATCCTGGAGTATCACCCCTCCAAGAACATGTTTGAAAAGGTGCACCAGGAGACCTTTGGCAAGAGTGGCTGTCGACGCATTGTTCCAGGACAGTTCCTGGCTGTGGATCCCAAAGGCAGAGCTGTTATGATCGGTGCTATAGAGAAGCAGAAATTGGTGTACATCCTGAATAGAGATGCAGCCGCTCGCCTCACCATCTCCTCCCCTCTGGAAGCACACAAGGCCAACACGCTGGTCTACCATGTGGTTGGGGTGGATGTGGGTTTTGAAAACCCCATGTTTGCCTGTCTCGAGATGGACTACGAGGAGGCTGATAACGACCCCACAGGGGAAGCGGCAGCTAACACGCAGCAGACTCTGACCTTCTATGAGCTGGACCTGGGGCTCAACCACGTAGTGCGCAAGTACAGCGAGGCTCTGGAAGAACATGGCAACTTCCTCATCACAGTGCCAGGTGGCTCTGATGGTCCGAGTGGTGTGCTCATTTGCTCAGAGAATTACATAACTTACAAGAACTTTGGGGATCAGCCAGATATCCGCTGCCCAATCCCACGCAGAAGGAATGACCTGGATGATCCAGAGAGGGGCATGATCTTTGTCTGCTCAGCCACACACAAAACCAAGTCCATGTTCTTCTTCCTCGCCCAGACAGAGCAAGGAGACATCTTCAAGGTTACCCTGGAAACAGATGAGGAGATGGTCACAGAGATTAGGATGAAATATTTTGACACCATCCCGGTGGCCACTGCCATGTGTGTGCTGAAGACTGGCTTCCTATTTGTGGCATCCGAGTTTGGAAACCATTATCTGTATCAGATAGCCCACCTGggtgatgatgacgatgaaCCCGAGTTCTCTTCTGCCATGCCTCTGGAGGAAGGAGACACCTTTTTCTTCCAGCCACGACCACTTAAGAACCTGGTGCTTGTGGATGAACAGGAGAACCTTTCCCCTATCATGTCCTGCCAGattGCTGATTTGGCCAACGAAGACACACCTCAACTGTATGTGGCATGTGGTAGAGGACCAAGATCTACACTAAGGGTTCTTAGACATGgtctggagGTCTCAGAGATGGCTGTGTCTGAGCTTCCTGGTAACCCTAATGCTGTGTGGACTGTGAGGAGGCATGTAGAAGATGAGTTTGACGCCTACATCATTGTGTCCTTCGTTAACGCCACACTGGTACTGTCAATCGGAGAAACTGTGGAAGAAGTGACTGACTCTGGCTTCCTGGGTACTACCCCAACTTTGTCCTGTTCTCTGCTGGGGGATGATGCTCTGGTGCAGGTCTACCCAGATGGTATTCGCCATATCCGAGCAGATAAGCGTGTGAATGAGTGGAAGACTCCAGGGAAGAAGACAATTGTGCGCTGTGCTGTGAACCAGCGGCAGGTGGTCATTGCCCTGACTGGAGGAGAGCTGGTCTACTTTGAGATGGACCCGTCAGGTCAGCTGAATGAGTACACCGAGAGAAAGGAGATGTCTGCAGATGTGGTGTGCATGAGCCTTGCGAACGTTCCTCCGGGTGAACAGCGATCACGGTTCCTGGCTGTGGGCTTGGTGGATAACACAGTGCGCATTATCTCCCTTGACCCCTCGGATTGCCTACAGCCGCTGAGTATGCAGGCTCTGCCTGCGCAGCCAGAATCTCTGTGTATAGTGGAGATGGGAGGTGTGGAGAAACAAGATGAGCTGGGAGAGAAAGGTGCCATTGGCTTCCTCTATCTCAACATTGGCCTGCAGaACGGTGTGTTACTCCGCACTGTGCTGGACCCAGTGACTGGGGACCTGTCTGACACTCGAACACGCTACTTGGGCTCTCGACCAGTGAAGCTTTTCAGAGTGCGAATGCAGGGCCAGGAGGCTGTGTTGGCCATGTCCAGCAGATCATGGCTGAGCTACTCATACCAGTCACGTTTCCATCTGACGCCACTTTCCTATGAAACCCTGGAGTATGCCTCAGGGTTTGCTTCAGAGCAGTGTCCTGAAGGCATTGTGGCCATCTCCACCAACACACTGAGAATTCTGGCTCTGGAGAAGCTGGGTGCTGTGTTTAACCAGGTGGCCTTCCCGCTACAGTACACACCACGCAGATTTGTCATTCATCCAGAGACCAACAACTTAGTCCTCATTGAAACGGACCACAATGCCTACACTGAAGCCACCAAGGCCCAGCGCAAGCAGCAGATGGCAGAGgAAATGGTGGAGGCTGCAGGAGAGGATGAGAGGGAGCTGGCTGCAGAAATGGCTGCTGCCTTTTTGAATGAGAACCTTCCAGAAGCGATCTTTGGTGCCCCAAAGGCTGGCTCGGGACAGTGGGCCTCACTGGTGCGCCTGATCAACCCCATCCAGGGCAATACCCTTGATTTAGTTCAACTGGAGCAGAATGAAGCTGCCTTTAGcGTGGCTGTTTGTCGCTTTGCTAATGGCGGTGATGACTGGTATGTCTTGGTGGGTGTGTCAAGAGACATGATCCTTAACCCACGCTCAGTGGGCGGTGGCTACATTTATACCTACCGCCTGGTAGGAGGTGGTGAAAAGCTGGAGTTTGTACACAAGACCCCAGTGGAGGATGTGCCCCTGGCCATCGCCCCCTTCCAGGGCAGAGTATTGGTGGGGGTGGGCAAACTGCTGCGCATCTACGACCTTGGCAAAAAGAAGCTGCTCCGCAAGTGTGAGAACAAGCATGTTCCTAACCTGGTGACGGGCATCCACACTATCGGCCAGCGTGTGATTGTGTCAGATATCCAGGAAAGTCTGTTCTGGGTGCGCTACAAGCGCAATGAAAACCAGCTCATCATCTTTGCTGATGACACAAACCCACGCTGGTTAACCACCGCCTGCCTGCTCGACTATGACACCATGGCTGCAGCTGACAAGTTTGGGAATATTAGTATTGTTCGTCTACCACCAAACACCAGTGATGATGTGGATGAGGACCCCACAGGGAACAAAGCGTTGTGGGACAGAGGCCTGCTCAATGGAGCCTCCCAAAAGGCTGATGTAATTGTGAACTACCACATAGGAGAAACAGTCCTGTCACTGCAGAAGACCACGCTCATCCCTGGAGGCTCGGAGTCTCTGGTGTACACCACTCTGTCAGGTGGCATTGGCATCCTTGTGCCCTTCACATCTCATGAGGACCACGACTTCTTCCAGCACTTAGAAATGCACATGCGCTCAGAGTTCCCTCCACTTTGCGGCCGAGACCATCTTAGCTTCCGCTCGTATTACTTCCCTGTGAAGAATGTAATTGATGGAGATCTCTGTGAGCAGTTTAACTCCATGGATCCCCATAAGCAGAAAAGTGTTGCTGAAGAGTTGGACCGCACACCACCAGAAGTGTCTAAGAAACTGGAAGACATCCGCACACGTTATGCCTTTTAAAATCCTTGTTGTATTTGTTCTACAAATGAACATTTTCAAGCCCACTTTGTTTTCGGTGCAACCACAAGTTTTCTGCCATAAATATGAGTACTGTATTTTGGACGAGTACTTTAAAGATGTTTAGAGACAGAGCCCATTAGAGAGGTGTCCCTTGATCAGTGTAGTAAAATTGAAGCTTTCCATGCCAAGGACTTGGTTGTGGTTTAAAAAGTGTAAGAGCAAGGAGTTGAACATGTTGGACAATACTTTTTCTGCTACCACAGTGTTTGAAATTATGTCTGATTTTTACCGTGTGCATCATAAGATTTCAGATTTAGCAACATGTTTAGTTCATTTGAAGTTTGAAAATAGTACTGCTCTTACGTGTCACTGTTCCAAATGATGGCGGAATTTGTAAAATAGCTATAGCTGTCTTTACAGAGGAACTGTGGGGTGTTTGTggttgtaatgtttttttttgttgttttttttttccttgggcCGGTTGCTCAGATCAAACTCATACCCACACTTTTTTTCTAAAGCTGTACTAAAATAAATACTCTTTGTAAAATGTTT

Function

symbol description
sf3b3 Predicted to enable U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be part of U2 snRNP and U2-type precatalytic spliceosome. Predicted to be active in nucleus. Orthologous to human SF3B3 (splicing factor 3b subunit 3).

NR:

description
PREDICTED: splicing factor 3B subunit 3

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12830 SF3B3, SAP130, RSE1; splicing factor 3B subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927304.2 True 4398 mRNA 0.50 27 13411360 13440802

Neighbor

gene id symbol gene type direction distance location
il34 NA coding downstream 6630 13398275 ~ 13404730 (-)
lonp2 lonp2,LOC107686284 coding downstream 15667 13374859 ~ 13395693 (-)
znf423 znf423,si:ch211-216l23.1,LOC107738741,LOC107583782 coding downstream 274143 12988345 ~ 13137217 (-)
si:ch211-212o1.2 tmem189,si:ch211-212o1.2,LOC108264382,LOC107672277,LOC107738740,LOC107740306,LOC107583780,LOC103466733,LOC100695703 coding downstream 426715 12948587 ~ 12984645 (-)
psme3ip1 fam192a coding downstream 497114 12904033 ~ 12914246 (-)
aars1 aars,LOC107686288,LOC107738729 coding upstream 34729 13475531 ~ 13491284 (-)
tgm2l LOC108264831,LOC108423869 coding upstream 53801 13494603 ~ 13505452 (-)
arl2bp arl2bp,LOC108264832,LOC107686354 coding upstream 81349 13522151 ~ 13525974 (-)
ppcdc ppcdc,LOC107583771,LOC107742893,LOC107686355,LOC107738727,LOC107672202 coding upstream 131051 13571853 ~ 13575817 (-)
ints14 vwa9,LOC107583765,LOC107596981 coding upstream 142126 13582928 ~ 13588984 (-)
LOC117597528 NA non-coding downstream 93352 13311395 ~ 13318008 (-)
G98790 NA non-coding downstream 228810 13182343 ~ 13182550 (-)
G98776 NA non-coding downstream 276187 13129200 ~ 13135173 (-)
G98767 NA non-coding downstream 382763 13027458 ~ 13028597 (-)
G98607 NA non-coding downstream 572818 12838220 ~ 12838542 (-)
G99118 LOC108280567 non-coding upstream 204773 13645575 ~ 13647786 (-)
G99134 NA non-coding upstream 292149 13732951 ~ 13768470 (-)
LOC113534845 NA non-coding upstream 324124 13764926 ~ 13765056 (-)
LOC113534347 NA non-coding upstream 341973 13782775 ~ 13784737 (-)
LOC113534852 NA non-coding upstream 342753 13783555 ~ 13783624 (-)
G98770 NA other downstream 359049 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 987382 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1006079 12396507 ~ 12405281 (-)
admb NA other downstream 1065908 12311822 ~ 12345452 (-)
sspn sspn other downstream 1533156 11870908 ~ 11878204 (-)
c6h15orf39 c4h15orf39 other upstream 109878 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 895134 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1906364 15347166 ~ 15357563 (-)
G101178 NA other upstream 4746645 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 6539267 19980069 ~ 19980259 (-)

Expression


Co-expression Network