bcar1 (bcar1)


Basic Information

Item Value
gene id bcar1
gene name bcar1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15395103 ~ 15467776 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927322.2
CGCAGTACGAGCACAAGTGTGTCTTTACACCAGAACCAGATCTAACCGATCAGTAAAAGCAGAGCACTAGTGCACTGGGCTGAGAGGACAGCCGCAGCCGGGGACGCTGTGGAGCGACGGATCGGAGAGCTGGCTCTGTGAAAGCTTTTCGTATGAGCTGCACTGCCCAGCCCTGTTCACTGGGCTTTCCTGTAGCTGATCGGGAAATATTCCTTCCTATTTTCTTCAAACTTCAGCCGTCCAAGCCAGCACACACAGCGGAGCGCGCATTGCCGCGCTGAAGCATGGAATAGACAGAAGTTCAAGCTTAAGAAAATCTGTGCTTCCTTGTCTATTTAAAACCCCAGTTTTACCCACAGCAGCTTCTTCAGGCAAGACTCGAGTGGTCAGATAAGGACCTCAAGATGTCCATTCCGAACGTGTTGGCCAAGGCTCTGTATGACAATGTGGCGGAGTCTCCAGACGAGCTCTCCTTTCGGAAAGGTGACATTATGACAGTGCTGGAGCGGGACACACAAGGCCTTGACGGCTGGTGGCTCTGCTCACTGCATGGGCGCCAGGGCATTGTACCAGGTAACCGACTCAAGATCCTGGTGGGCATGTATGACAAGCAGCAGTCTTCCAGCTCCCCAATATGCTCAACTCAGAGCCACCTCAGCATTCCACCTAGTGCCTACACCAAGCCTTCGCCCGCTGCCCAGTACACAGCCATGCACCCAGCCTGTACTAGCCCTCCCAGCCTGTATCAAGTGCCCACTGGGCCCCAGACTCCACAAACCCAGCCCAAAGCTCCACCCCTCACACAGAAACAAGGTGCTGGTAAATATCACCCAGCTGGGCAGGAGATCTACCAGGTGCCACCCTCCATGGGCACACCAGGCCAAGACATCTACCAGGTACCACCCACAAGTGGAGGACAGGATATATACCAGGTGCCCCCCTCTTTGAACCAGAAACAAGAGGTCTACCAGATTCCCCCCTCCATGGAGAAGAGAGGCTGGGACACCCCCAAGACCTTGGGAAAGgtGGTGGTGCCCACACGGgttggccaaatgtatgtgtatgACACGGGGAACACAGAACAAGATGAGTATGATGTCCCCCGACACCTGCCTACCTCCCAGGACATCTATGACGTTCCACCTACCCGTGGCCAATATATCCAGCAGGTATATGACACTCCTCCCATGGTAATGAAAGGACCAACCAGCAGAGATGTACAGGGAATCTATGACACCCCCCCAAGTGTGGACAAGATCCAGCTGCTCTCCCAGCAAATGGTGTATGACTTCCCCCCATCTGTGAGTAAGGACGTTCCAGACGCACTCATCAAGGAGGAGACCTATGACGTCCCACCTCATTTTGCCAAAATTAAGAGTCTAAGCCCAAATGCAGCCAATCCTGAACCACCGATACCCGAAGATGTGTATGATGTTCCACCCCCTCAGCTAGCCGGCAAACCACAGGCTGAGGCGCAGGAAATCTATGACATCCCCAGCAGCCTACATCAGGGTGACGTCTACGACTTCCCACGTGAGCGCCCACCAGTTGCTGAGGAATCAGGTGACTATGTCTATGATGTCCCACCACAGGTGGTACGTGATGCAGCGGGTGCTACCACAGAGGAACTGACAGTGAGCTTCAAGCGCCTATCTGCTTCCAGCACAGGAAGCACACGCAGTAACTTGTCCACGTCATCCCTGGACACAGTGCCAGTGAGGGACAGTACCGTGCCAACCCGCCTGCTTTCCCTAGACCTTGAGCAGGCCATGGAGCGGCTCTCACGCCTGCAGCAGGCCGTGGATACCTCAGCTTCAATGCTCATGTCCTTTGTCAGTGGTGATTGGAGGAGCCCTGCCCAGATGGATGCCAATTTGCCCTCCATTCGACGGGCATCTGAATGCTTACGAGCATCAGTCAGGGAGCTACTGGAGTTTTCTCGCGGTGCTGTGGCCAATGCTGCCCAGGCCACTGATCGTACACTACAGGCCAAGCTCAGCAAGCAGGTGCAGAAGATGGACGAGGCCTTCCAAGGTCTGCTCAAGCACAGTCAGGCGCTGGATGCCCTGGGTTGGGCTCCTGCTGCTCTCCCAGCACCGGCTGCCAACAGTGGTGGGGACGACCTGGACCGGCTGGTCATGTGTGCTCGTGCTGTGCCCGATGACACCAAGCAGCTAGCATCCTTCCTGCATGGCAATGCGACCTTGCTCTTTAGACGGACAAACAGGCAGCAGCAGACCTCAGACGTGTTGGGCCAGCTGAGCAGCAACAGCTCTAATGTCTCAGCTTATCAGACAGGCACACCCGACAGGACCAACATCCAGTCACGTCCCCTGCCCTCGCCACCCAAGTTCACAGCCGAAGAGGAAGCTCCCGAGCGGCCTTATGAAACCACAGAGGAAGGCTGGATGGAGGACTATGACTATGTACATTTACAGGGTAAGGAGGAGTTTGAGAAGAACCAGCGACAGCTGCTGGAGAAAGGCAACATCACCAGACACAATAAGACCCAGCTAGAGCAGCAGCAGCTCAAACAGTTTGAGAGGCTAGAGCAGGAAGTCAGCCGGCCAATCAACAATGACATTTCGGGCTGGACCCCGCCCCCACACTACCCACCGCCGTCGCGCAGCAAGCTGTGTGCAGGTGACCGGCAACTGCTCCTATTCTACTCGGAGCAGTGTGAGGCCAACATCACCACGCTGACCAATGCCATCGATGCTTTCTACTCATCCATCAACAACAATCAGCCGCCCAAGATCTTTGTCGCCCACAGCAAGTTCGTCATCCTCAGTGCCCATAAGCTGGTCTTCATTGGAGATACAGTCTCACGCCAGGCCAAGTCCCCTGAGGTGCGGAGCAGGGTGGCACAGCACAGCAACGCGCTCTGTGAAAAGCTGAAAGACATTGTAGTTAGCACCAAAACTGCAGCCCTACAGTACCCATCTCCAGGGGCAGCACGGGACATGACCGAGAGGGTCCGCGAGCTGTCTGGCTGTACCCAGCAATTCCGCATGGCTCTCAATCACCTACTGTCCATGTGA
>XM_026927323.2
ATGAATTATctgAACGTGTTGGCCAAGGCTCTGTATGACAATGTGGCGGAGTCTCCAGACGAGCTCTCCTTTCGGAAAGGTGACATTATGACAGTGCTGGAGCGGGACACACAAGGCCTTGACGGCTGGTGGCTCTGCTCACTGCATGGGCGCCAGGGCATTGTACCAGGTAACCGACTCAAGATCCTGGTGGGCATGTATGACAAGCAGCAGTCTTCCAGCTCCCCAATATGCTCAACTCAGAGCCACCTCAGCATTCCACCTAGTGCCTACACCAAGCCTTCGCCCGCTGCCCAGTACACAGCCATGCACCCAGCCTGTACTAGCCCTCCCAGCCTGTATCAAGTGCCCACTGGGCCCCAGACTCCACAAACCCAGCCCAAAGCTCCACCCCTCACACAGAAACAAGGTGCTGGTAAATATCACCCAGCTGGGCAGGAGATCTACCAGGTGCCACCCTCCATGGGCACACCAGGCCAAGACATCTACCAGGTACCACCCACAAGTGGAGGACAGGATATATACCAGGTGCCCCCCTCTTTGAACCAGAAACAAGAGGTCTACCAGATTCCCCCCTCCATGGAGAAGAGAGGCTGGGACACCCCCAAGACCTTGGGAAAGgtGGTGGTGCCCACACGGgttggccaaatgtatgtgtatgACACGGGGAACACAGAACAAGATGAGTATGATGTCCCCCGACACCTGCCTACCTCCCAGGACATCTATGACGTTCCACCTACCCGTGGCCAATATATCCAGCAGGTATATGACACTCCTCCCATGGTAATGAAAGGACCAACCAGCAGAGATGTACAGGGAATCTATGACACCCCCCCAAGTGTGGACAAGATCCAGCTGCTCTCCCAGCAAATGGTGTATGACTTCCCCCCATCTGTGAGTAAGGACGTTCCAGACGCACTCATCAAGGAGGAGACCTATGACGTCCCACCTCATTTTGCCAAAATTAAGAGTCTAAGCCCAAATGCAGCCAATCCTGAACCACCGATACCCGAAGATGTGTATGATGTTCCACCCCCTCAGCTAGCCGGCAAACCACAGGCTGAGGCGCAGGAAATCTATGACATCCCCAGCAGCCTACATCAGGGTGACGTCTACGACTTCCCACGTGAGCGCCCACCAGTTGCTGAGGAATCAGGTGACTATGTCTATGATGTCCCACCACAGGTGGTACGTGATGCAGCGGGTGCTACCACAGAGGAACTGACAGTGAGCTTCAAGCGCCTATCTGCTTCCAGCACAGGAAGCACACGCAGTAACTTGTCCACGTCATCCCTGGACACAGTGCCAGTGAGGGACAGTACCGTGCCAACCCGCCTGCTTTCCCTAGACCTTGAGCAGGCCATGGAGCGGCTCTCACGCCTGCAGCAGGCCGTGGATACCTCAGCTTCAATGCTCATGTCCTTTGTCAGTGGTGATTGGAGGAGCCCTGCCCAGATGGATGCCAATTTGCCCTCCATTCGACGGGCATCTGAATGCTTACGAGCATCAGTCAGGGAGCTACTGGAGTTTTCTCGCGGTGCTGTGGCCAATGCTGCCCAGGCCACTGATCGTACACTACAGGCCAAGCTCAGCAAGCAGGTGCAGAAGATGGACGAGGCCTTCCAAGGTCTGCTCAAGCACAGTCAGGCGCTGGATGCCCTGGGTTGGGCTCCTGCTGCTCTCCCAGCACCGGCTGCCAACAGTGGTGGGGACGACCTGGACCGGCTGGTCATGTGTGCTCGTGCTGTGCCCGATGACACCAAGCAGCTAGCATCCTTCCTGCATGGCAATGCGACCTTGCTCTTTAGACGGACAAACAGGCAGCAGCAGACCTCAGACGTGTTGGGCCAGCTGAGCAGCAACAGCTCTAATGTCTCAGCTTATCAGACAGGCACACCCGACAGGACCAACATCCAGTCACGTCCCCTGCCCTCGCCACCCAAGTTCACAGCCGAAGAGGAAGCTCCCGAGCGGCCTTATGAAACCACAGAGGAAGGCTGGATGGAGGACTATGACTATGTACATTTACAGGGTAAGGAGGAGTTTGAGAAGAACCAGCGACAGCTGCTGGAGAAAGGCAACATCACCAGACACAATAAGACCCAGCTAGAGCAGCAGCAGCTCAAACAGTTTGAGAGGCTAGAGCAGGAAGTCAGCCGGCCAATCAACAATGACATTTCGGGCTGGACCCCGCCCCCACACTACCCACCGCCGTCGCGCAGCAAGCTGTGTGCAGGTGACCGGCAACTGCTCCTATTCTACTCGGAGCAGTGTGAGGCCAACATCACCACGCTGACCAATGCCATCGATGCTTTCTACTCATCCATCAACAACAATCAGCCGCCCAAGATCTTTGTCGCCCACAGCAAGTTCGTCATCCTCAGTGCCCATAAGCTGGTCTTCATTGGAGATACAGTCTCACGCCAGGCCAAGTCCCCTGAGGTGCGGAGCAGGGTGGCACAGCACAGCAACGCGCTCTGTGAAAAGCTGAAAGACATTGTAGTTAGCACCAAAACTGCAGCCCTACAGTACCCATCTCCAGGGGCAGCACGGGACATGACCGAGAGGGTCCGCGAGCTGTCTGGCTGTACCCAGCAATTCCGCATGGCTCTCAATCACCTACTGTCCATGTGAAAACAAACATGGGAGCGTATAGAAACACTGAGATCACACATGCATGGAGTCCCACTTACTCGTTCCATATCCATGCTTTGTGCTTTTTATTCACCCCTCCCCTAAAAAAAGACTATAAACACTATCAGTGAATAGTGCTATGGGTTGTAAatgaatttatgtaaatatataagtttctgtaagaagatgggGAAGTAGTGGGTCAACAAGAAAGGATGAACTGTATCTTTTTTGAacaagagaggagaaaaaaaacaactgaaaagtAGTTTTTAGTCATTattcactattattattgttataatgtaattattgccCTGATTATAATAATTGTTATCATTCTTATTATTACTGATGAGATATTAAGGGTGTCTagaattttaaatgtgtatgtagAAGTACTTAATGCCATTTTTCATCAGTGAGGaggatttttaataaatttgtatgTTAGCATGAGGGAAGTGATGGCAGCAGACATGCAgtgctttgtatttttaatcaaCAGGGCTGATTCAGGGTGGGAGCAAAGCATTCTAGTGAGCTGTCTGGTAGACTGTACACATAGACTGCGTAAATGAGGGAAAGGTAATTCAATTCACTTTATCTGCTACAATATTCCAATGAAACAGAGTCAAAAGATTGGATTTGGAATACACTGCTTATAAAACATGTGAGAAAAGAGTAGatctttttaacttttaagtAGTTTCATTCCCAGCATACTTGTTATTTCTTTCAGTATGCTTGCTCACCTTTCTCCCACTCCAGTCgtagtgtgcattttttttaacaaatctcTATGACTTGCTGTGCACTGTTCCAGATTTTTCCTGTGTTCTAGATAAGGCTTCGTATCTAGCAGCATGCCAAAGCCGTTCTCCATTGCAGTGCTATACCCTGCTGGACAGGGTCATATTAGCCAAAGGGTTCtgtttaataactgaaaaagaTTTTTCCTTTTGGCACATTCCTGACCGTTAATGACTGTTAATCATGATGGCAGGTCTGTTCCTATGAGTAggctctttttcttttaatagcgctataaaaatgtttaaccaCCTCATAGTTAAACACGCCTAGTGTATTAAAATAGTACATTTTATCGAACCCCTAAAGATCAGCTAAGAATTAGGCTCGTTCGCTATACTGTAATGTGGCAACTGCTATGTTGTGTTTTCACTCACCTTTTGCAAAAAGTTTGTCACTGGAGGGCAATGTTgagaaaaaaatccatctgCCTCAAATGTTTTCTTGGCTTTTTAACACCCTATTGGTTGTATTTTGAATATCAGAATCTGTCAGCAGAAATAAGTTGGTGAACGTGGTTTTACCTTTAAGTACTACATGTTGTGCATATAGACAGAATCCCTATCCAGTTTGAAAAAAAGGAgcacagtgaaaataaatattgactTGGTATTTGTTGTAATGTAATTTCATCCTCAGATCTGTGTTTAAGGGTTTGGAATATCTTTGCGATGttaaaaacatactgtaaattGCATAACTggaaaatatatgtttaatatattttcattaaaaaaattgatcaAGCCAA

Function

symbol description
bcar1 Predicted to be involved in actin filament reorganization; cell migration; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within cell adhesion and signal transduction. Predicted to be active in cytoplasm and focal adhesion. Predicted to colocalize with plasma membrane. Human ortholog(s) of this gene implicated in breast ductal carcinoma. Orthologous to human BCAR1 (BCAR1 scaffold protein, Cas family member).

NR:

description
PREDICTED: breast cancer anti-estrogen resistance protein 1-like

GO: NA

KEGG:

id description
K05726 BCAR1, CAS; breast cancer anti-estrogen resistance 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927322.2 False 3041 mRNA 0.55 7 15395103 15466212
XM_026927323.2 True 4201 mRNA 0.48 7 15436242 15467776

Neighbor

gene id symbol gene type direction distance location
cfdp1 cfdp1,LOC105419833 coding upstream 6156 15358403 ~ 15388947 (+)
ctcf ctcf,LOC107583725 coding upstream 95524 15291924 ~ 15299579 (+)
ripor1 fam65a coding upstream 103653 15215050 ~ 15291450 (+)
ranbp10 ranbp10,LOC107583731 coding upstream 224184 15131265 ~ 15170919 (+)
necab2 necab2,LOC107672281,LOC106573751 coding upstream 426096 14885256 ~ 14969007 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding downstream 9690 15477466 ~ 15482137 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding downstream 55015 15522791 ~ 15601904 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding downstream 145504 15613280 ~ 15653287 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding downstream 193216 15660992 ~ 15672334 (+)
mef2aa mef2a coding downstream 255647 15723423 ~ 15809116 (+)
G99819 NA non-coding upstream 171249 15223649 ~ 15223854 (+)
G99813 NA non-coding upstream 179387 15215391 ~ 15215716 (+)
G99786 NA non-coding upstream 214332 15176236 ~ 15180771 (+)
G99766 NA non-coding upstream 221668 15171332 ~ 15173435 (+)
G99705 NA non-coding upstream 336332 15055267 ~ 15058771 (+)
G99854 NA non-coding downstream 162 15467938 ~ 15468216 (+)
G99893 NA non-coding downstream 54244 15522020 ~ 15522724 (+)
LOC117597598 NA non-coding downstream 140194 15607970 ~ 15609103 (+)
G100079 NA non-coding downstream 203553 15671329 ~ 15734348 (+)
G100097 NA non-coding downstream 391483 15859259 ~ 15859474 (+)
carmil2 carmil2,rltpr other upstream 48957 15300482 ~ 15346146 (+)
G99341 synm other upstream 870623 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1352651 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1438752 13932539 ~ 13956351 (+)
G98972 NA other upstream 1605713 13785095 ~ 13789390 (+)
G100306 NA other downstream 881681 16349457 ~ 16349787 (+)
G100345 NA other downstream 1132481 16600257 ~ 16601067 (+)
rgma NA other downstream 1189825 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1932650 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 2021770 17489546 ~ 17493092 (+)

Expression


Co-expression Network