nr2f2 (nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769)


Basic Information

Item Value
gene id nr2f2
gene name nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16074947 ~ 16083613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927324.2
TGTCAAAGTTCACTATATAGAGAGCTCGGTGAGCTGATCAGAGAGAAAGCATTCTGCCAGCCCAGCGCCTCCAAATCGCAATCACTTCCTAACCTCCCCCTTTTCATCATATTTGATCACTTTGATTCTCCGTTCTCTTCTCTTATTATTTCTGCTACACGCAAAGGAAGCTCAGTAGGTtgtgctctctttttttgtttccttatCGCTGCCGCTCGCCTGGAGAGTTGACTTCATATTTGACTCGAGCACGCAGGCTTGGTTTTGCGCGCGGCGGCGGCTAGCGCTACCTcatctggaagaaaaaaaaggaagaagcgGCGATATTTGGGTCCAGTTGTTGGGTTTTCTACAACACTTCAAGACTGGAACTTGGTGTGCCGCTCGCCAGTTTGTGTAATCTACACGAGCTCTTGTATTTTCCGCGAGTCTGAACGTCGCTAAGTTATACTGGCCCCGTGTCTGTAGCAGACTCTTGCTCTTCTTTAGTCGTCGTATTtattttccacttttatttttttttttcttccacggCTTTCCTGGATGGATGACTGCAGGCGCCCCTGGACGTGGCCTCTAAGAGCAGGACTGCGATTCGGCTCGTCTTCGTGTCAGTTGTAACCGCTGCCAAGTCCCGAAAGCGGGCTACGCTTCGCCGTCGGCGCGCGACTTTCAGTGGGATAAAAGCACAGGGTGCAGTATTTCTTCGCCCGATCAACAAACCTCGACGTGCTGCGTTGCTTTAGAACCAGGGCCACCAGGACACGGCAgcaacaaaacaagacaaaaagaaaccaaacaaagcaaaacaaaacaaaaaaacaaaaacaaaacggaCGACACAAAGTTGCTGACTGATTAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCCGAGACGCAGGGCGCCCTCTCATCGCAAGCCCAAGGCGGACTAACCCTTGCGACCCCTCAGCCGGGCCAGCTGAACCTCACGGCCTCGCAGGTCGCGCCTCCGACCCCGCAGACTCCTGTTCAAGGAGCGCCGAATAGCAACGCGCAGTCCACGCCAACGAACCAGACGTCGCAGAGTCAGTCGgacaagcagcagcagcagcacatcgAGTGCGTGGTGTGCGGCGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACATGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGCGCAACCTCACATACACGTGCCGCGCCAACCGGAATTGTCCCATCGACCAGCACCACCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGTCTCAAAGTTGGCATGAGACGGGAAGTTTCTCTTTTTGCAGCGGTCCAGAGGGGCAGGATGCCACCCACGCAGCCGCACCACGGCCAGTTCGCCCTGACGAACGGGGACCCGCTGCACTGCCATTCCTACTTATCGGGATATATCTCTCTGCTGCTGCGAGCAGAGCCCTACCCCACGTCGCGCTATGGCAGTCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCGGCGCGCATGCTGTTCAGCGCCGTGGAGTGGGCCAGGAATATTCCCTTCTTCCCCGACCTGCAGATCACAGACCAGGTGGCTCTGCTCAGGCTCACCTGGAGCGAGTTGTTCGTCCTCAACGCGGCCCAGTGCTCCATGCCACTGCATGTAGCTCCTCTGCTAGCCGCCGCAGGCCTCCACGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCCTTTATGGACCACATTAGGATCTTCCAGGAGCAAGTTGAAAAGCTCAAAGCATTACATGTCGACTCGGCCGAATACAGCTGCTTAAAAGCCATCGTGTTATTCACCACGGaTGCTTGCGGGCTGTCAGACGTGGCCCACATCGAAAGTTTGCAGGAGAAGTCGCAGTGTGCACTGGAGGAGTACGTGCGGAGCCAATACCCTAACCAGCCTACGCGATTTGGGAAGTTATTACTACGCCTGCCTTCTCTGCGCACAGTGTCCTCTTCGGTCATAGAGCAATTATTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCCGGGATATGTTGCTGTCAGGGAGCAGTTTTAACTGGCCATATATGTCCATTCAATAAGCAGAAGGAAGGATCGGAAATGGGGGTCCATTAGTTAGCGCTTCTTTTTGTAGAAGAAACCGGCTGTTACACGAGTTTACTTTCACGGAAAAGAGACGTTTTTCATAAATGACTGTGAATCTTCAAATCTGAGACATTTAATGAAAACTACCTGGGGG
>XM_026927325.2
TGTCAAAGTTCACTATATAGAGAGCTCGGTGAGCTGATCAGAGAGAAAGCATTCTGCCAGCCCAGCGCCTCCAAATCGCAATCACTTCCTAACCTCCCCCTTTTCATCATATTTGATCACTTTGATTCTCCGTTCTCTTCTCTTATTATTTCTGCTACACGCAAAGGAAGCTCAGTAGGTtgtgctctctttttttgtttccttatCGCTGCCGCTCGCCTGGAGAGTTGACTTCATATTTGACTCGAGCACGCAGGCTTGGTTTTGCGCGCGGCGGCGGCTAGCGCTACCTcatctggaagaaaaaaaaggaagaagcgGCGATATTTGGGTCCAGTTGTTGGGTTTTCTACAACACTTCAAGACTGGAACTTGGTGTGCCGCTCGCCAGTTTGTGTAATCTACACGAGCTCTTGTATTTTCCGCGAGTCTGAACGTCGCTAAGTTATACTGGCCCCGTGTCTGTAGCAGACTCTTGCTCTTCTTTAGTCGTCGTATTtattttccacttttatttttttttttcttccacggCTTTCCTGGATGGATGACTGCAGGCGCCCCTGGACGTGGCCTCTAAGAGCAGGACTGCGATTCGGCTCGTCTTCGTGTCAGTTGTAACCGCTGCCAAGTCCCGAAAGCGGGCTACGCTTCGCCGTCGGCGCGCGACTTTCAGTGGGATAAAAGCACAGGGTGCAGTATTTCTTCGCCCGATCAACAAACCTCGACGTGCTGCGTTGCTTTAGAACCAGGGCCACCAGGACACGGCAgcaacaaaacaagacaaaaagaaaccaaacaaagcaaaacaaaacaaaaaaacaaaaacaaaacggaCGACACAAAGTTGCTGACTGATTAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCCGAGACGCAGGGCGCCCTCTCATCGCAAGCCCAAGGCGGACTAACCCTTGCGACCCCTCAGCCGGGCCAGCTGAACCTCACGGCCTCGCAGGTCGCGCCTCCGACCCCGCAGACTCCTGTTCAAGGAGCGCCGAATAGCAACGCGCAGTCCACGCCAACGAACCAGACGTCGCAGAGTCAGTCGgacaagcagcagcagcagcacatcgAGTGCGTGGTGTGCGGCGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACATGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGCGCAACCTCACATACACGTGCCGCGCCAACCGGAATTGTCCCATCGACCAGCACCACCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGTCTCAAAGTTGGCATGAGACGGGAAGCGGTCCAGAGGGGCAGGATGCCACCCACGCAGCCGCACCACGGCCAGTTCGCCCTGACGAACGGGGACCCGCTGCACTGCCATTCCTACTTATCGGGATATATCTCTCTGCTGCTGCGAGCAGAGCCCTACCCCACGTCGCGCTATGGCAGTCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCGGCGCGCATGCTGTTCAGCGCCGTGGAGTGGGCCAGGAATATTCCCTTCTTCCCCGACCTGCAGATCACAGACCAGGTGGCTCTGCTCAGGCTCACCTGGAGCGAGTTGTTCGTCCTCAACGCGGCCCAGTGCTCCATGCCACTGCATGTAGCTCCTCTGCTAGCCGCCGCAGGCCTCCACGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCCTTTATGGACCACATTAGGATCTTCCAGGAGCAAGTTGAAAAGCTCAAAGCATTACATGTCGACTCGGCCGAATACAGCTGCTTAAAAGCCATCGTGTTATTCACCACGGaTGCTTGCGGGCTGTCAGACGTGGCCCACATCGAAAGTTTGCAGGAGAAGTCGCAGTGTGCACTGGAGGAGTACGTGCGGAGCCAATACCCTAACCAGCCTACGCGATTTGGGAAGTTATTACTACGCCTGCCTTCTCTGCGCACAGTGTCCTCTTCGGTCATAGAGCAATTATTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCCGGGATATGTTGCTGTCAGGGAGCAGTTTTAACTGGCCATATATGTCCATTCAATAAGCAGAAGGAAGGATCGGAAATGGGGGTCCATTAGTTAGCGCTTCTTTTTGTAGAAGAAACCGGCTGTTACACGAGTTTACTTTCACGGAAAAGAGACGTTTTTCATAAATGACTGTGAATCTTCAAATCTGAGACATTTAATGAAAACTACCTGGGGG
>XM_026927326.2
ttgtgtgtgtgatcggTAAATATTTAGTGTGACACCGTCTTTGGGTCCCGTCCTAATCGATAGCGGTTTCCAGGAGCACTGCTCCCTGCGGGTGAAGTGAGCTTTTCACAGTGAAGTGTACTCTCATTTGAATCAGGATGCGGCTTGCTTATCTAGCAGAGTGCCCTGGAAATCACATTTGGAAGGCCTTGACAAAAAGTCTCCATGGTTTTGATATTTGAACTTTTTGGGATGAACACTTCTGCTGGCTGATTCTCGGTCTTGTACGCGGTGGACTGCGCAGAAGGCGTTTTAATTGGAGTGGTAAAGTTTAGTGTGGTCTCGGTGAACTTGGCCATGGATAGAATGCGAATGTCCCCATAAACAGACAGGTGTCTCTCCTGGCTGcgtctccccctccctctctctctctcagtccctCAGCCTACACAAAGCAAGTGGCGTTCTACCTTctgtacaaaagaaaaacacgCAAAGGACCATCTTGTCCCTTTTTTTCAAAACACTTTCGCTTATAAAGACAAGCCCATTAGTAGCAGTGTACTAAATAACAGACTTCCAAAGTTAAAGCTTCGTAGAAAAGTTGGTTTGACTTGACGCtctgccaattttttttttctgcttcttcttcttcttcttcttttattccctaaagctttttttaatcatttcaataAACCGAGGAACCTGTTTTTCTCGTGCATTACTCCGTCTGTGGGGAAGGGAACACTGTCTGCCCCAGCAAACACACCgtaaaaacacaaagaaagacagaagactAAGTTGGTTTTCTCTAGGAGAGGATGCACTACGGGGACGACGAATCGACATCCTATGCTTTTGCGGTCCAGAGGGGCAGGATGCCACCCACGCAGCCGCACCACGGCCAGTTCGCCCTGACGAACGGGGACCCGCTGCACTGCCATTCCTACTTATCGGGATATATCTCTCTGCTGCTGCGAGCAGAGCCCTACCCCACGTCGCGCTATGGCAGTCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCGGCGCGCATGCTGTTCAGCGCCGTGGAGTGGGCCAGGAATATTCCCTTCTTCCCCGACCTGCAGATCACAGACCAGGTGGCTCTGCTCAGGCTCACCTGGAGCGAGTTGTTCGTCCTCAACGCGGCCCAGTGCTCCATGCCACTGCATGTAGCTCCTCTGCTAGCCGCCGCAGGCCTCCACGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCCTTTATGGACCACATTAGGATCTTCCAGGAGCAAGTTGAAAAGCTCAAAGCATTACATGTCGACTCGGCCGAATACAGCTGCTTAAAAGCCATCGTGTTATTCACCACGGaTGCTTGCGGGCTGTCAGACGTGGCCCACATCGAAAGTTTGCAGGAGAAGTCGCAGTGTGCACTGGAGGAGTACGTGCGGAGCCAATACCCTAACCAGCCTACGCGATTTGGGAAGTTATTACTACGCCTGCCTTCTCTGCGCACAGTGTCCTCTTCGGTCATAGAGCAATTATTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCCGGGATATGTTGCTGTCAGGGAGCAGTTTTAACTGGCCATATATGTCCATTCAATAAGCAGAAGGAAGGATCGGAAATGGGGGTCCATTAGTTAGCGCTTCTTTTTGTAGAAGAAACCGGCTGTTACACGAGTTTACTTTCACGGAAAAGAGACGTTTTTCATAAATGACTGTGAATCTTCAAATCTGAGACATTTAATGAAAACTACCTGGGGG

Function

symbol description
nr2f2 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and retinoic acid binding activity. Acts upstream of with a positive effect on venous endothelial cell fate commitment. Acts upstream of or within circulatory system development. Predicted to be located in nucleus. Is expressed in several structures, including brain; head; hindbrain neural keel; midbrain neural tube; and neural crest cell. Human ortholog(s) of this gene implicated in 46,XX sex reversal 5. Orthologous to human NR2F2 (nuclear receptor subfamily 2 group F member 2).

NR:

description
PREDICTED: COUP transcription factor 2-like isoform X3

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0060838 lymphatic endothelial cell fate commitment biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08548 NR2F2, TFCOUP2; COUP transcription factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927324.2 True 2300 mRNA 0.53 3 16074947 16080265
XM_026927325.2 False 2285 mRNA 0.53 3 16074947 16080265
XM_026927326.2 False 1804 mRNA 0.49 3 16074947 16083613

Neighbor

gene id symbol gene type direction distance location
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 575695 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 601932 15471629 ~ 15473015 (-)
pard6a pard6a,LOC107692936 coding downstream 874699 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 942741 15121047 ~ 15132206 (-)
nutf2 nutf2 coding downstream 955229 15105315 ~ 15119718 (-)
LOC113534689 NA coding upstream 497749 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 597309 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 855278 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 1005028 17088641 ~ 17307902 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 1338748 17422361 ~ 17478285 (-)
G100179 NA non-coding downstream 135618 15939123 ~ 15939329 (-)
G100154 NA non-coding downstream 211168 15863580 ~ 15863779 (-)
LOC113534668 NA non-coding downstream 348590 15690281 ~ 15726357 (-)
G100072 NA non-coding downstream 419160 15653386 ~ 15655787 (-)
G100007 NA non-coding downstream 471411 15603259 ~ 15603536 (-)
LOC113534800 NA non-coding upstream 5331 16088944 ~ 16134169 (-)
G100288 NA non-coding upstream 114881 16198494 ~ 16198698 (-)
G100298 NA non-coding upstream 149409 16233022 ~ 16233273 (-)
G100302 NA non-coding upstream 234676 16318289 ~ 16318736 (-)
G100307 NA non-coding upstream 265844 16349457 ~ 16349787 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 717384 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 1727939 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 2512373 13550680 ~ 13562574 (-)
G98770 NA other downstream 3022636 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 3650969 12420437 ~ 12423978 (-)
G101178 NA other upstream 2103834 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 3896456 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 4312253 20395866 ~ 20416574 (-)
G102566 NA other upstream 4869989 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 4911728 20995341 ~ 21013100 (-)

Expression


Co-expression Network