tbxas1 (tbxas1)


Basic Information

Item Value
gene id tbxas1
gene name tbxas1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9349891 ~ 9414387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927328.2
AAACAGTAGAAAAGTAAGTGAAGGGTGGTAACTAAAGCCAAAACATTGATCAGAGCTGTTTAGTACTGTCTATTACAATTCATTCAGTTTGTGCTGCATCCTGACATGCTGATGATGTTCGGTGCTGAGCCAAGTGGATTCTCCGTGTCCCTTGGCCTTTTCCTGCTCTTCTTGGTTCTTCTGTACTGGTATTCCACCTCCCCCTATTCGGTCTTGCAGCGATGTGGCATCCGACACCCCAAACCAGCTCCGTTCTTCGGAAACATGATGCTGTTTCGACATGATTTTTTCAAAGCTCAGAAGGACCTGGTCAAGCAGTACGGCCGAGTGTGTGGTTATTATCTAGCCAGACAGCCAGTGGTGGTGATAGCTGACCCAGACATGCTCAGACAGGTTATGGTGAAGGAGTTTCATAACTTCCCAAACAGAATGttatttaggATGGCTACAAAGCCGATGAAGGACAGTCTTGTCATGCTGAGGGATGAACAGTGGAAACGAGTACGCAGCATCCTCACACCAACCTTCAGCGCAGCCAAGATGAAAGAGATGGTCCCTCTTATCCATGTAGCTACAGAAACATTACTGAACAACCTGAAGGCTTACGCGGAGTCTGGAGAGAGTGTTGACATCTACAGGTGTTTTGGTTGCTTCACTATGGATGTGATAGCAAGTGTGGCGTTTGGCATGCAAGTGGACTCCCAGAACAACCCCAGCGACCCATTTGTGCACTACGCCTCCAAGTTCTTTGCCTTCTCTTTTTTCCGACCCATcatgttcatcttcaTGACTTTCCCGTTCCTGATTGGGCCGTTCGGTGGCTTGATGCGAGATAAAGACAGCAGTGCGATGAGCAGGTTCTTCACCACTTGCATTCAGAAACTTATAAAGCAGAGGGATGAATTGCCACCCAGTCAGAGGCGGAGGGACTTCCTGCAGCTGATGCTGGATGTGAGGAGCAGTAAGGAATGTGTATCCCTGGATCACTTTGACGTGGTCAATCAAGCAGATGAGCAAGTTGTGGCTGACGGAAAGTCAGAAAGCTCCCGTGAGTCGGCAAAACGCAGCCAGCAGAAAAGGATGATGACGGAGGATGAGATCGTAGGCCAGGCCTTCATCTTCCTCGTCGCTGGCTATGAGACAAGCAGTAACACTCTTGCATTCGCCTGCTACCTGCTGGCCACCCACCCGGACTGTCAGAAGAAAGtacagagagagctggacaACTTCTTAAGCAGACACGGCTCCGTAGATTACACTAATATTCAGGAGCTGAAGTATTTAGACATGGTGGTGTGTGAGACTCTGAGACTGTATCCACCAGCATTTAGATATATGCGCTCTATTGAGCATGACTGTGTGGTGAATGGACAGTTGCTGCCTAAAGGAGCTACACTAGAGATCCCAGCAGGCTTCCTGCATTCTGACCCAGAGCACTGGCATGAGCCGGAGAAATTCATACCTGAAAGGTTTACCCCTGAAGCCAAGGCCAGTCGACACCCTTTCGTGTACCTGCCATTCGGAGCAGGGCCTCGCAGCTGTGTGGGCATGAGACTGGCCCAGCTGGAGATTAGGATGGCACTGGTCAacatctttaaaacatttaatctgATGGCATGTGAGGACACCGAgGTTCCTCTTACTTTAAAGTCAAATACCACCCTCGGACCCAAGAATGGAGTTTTTGTCAAAATTGCCAAGAGAGAGAATTTTGGTGATGCACAAAAATAGACAGTGATTCCTGTGAGCCTgattttaagaaagaaaaaaaaaacttctataaTCTTGTGATTAGTATGTGAATAATAGAGGATATTACTgatataattttgtaaaaatacaCCATATGAATATTCAGCCTAATTATATAAACTGATGTTCCTAATCTCttttacatttgatttcttGGAAATAACAAATTGCTTTACTCATTGTAAATctacacaaaaggacaaaatCTTATCATATTGGGATCAAGACCAAAGAATAACAACAGAAGGGACAATAGGGTGGGATTCAtcaaattaatgattaatggttaatgattcatttcaaatgaCTGTAGATTGCACTGTCATGGCAcctgtgtattaaaaaaattctaattcatAGGCA
>XM_026927329.2
TGCCTAactgtagtcttttttttttaaacattcgcAAAAACTACATTACCCAGGAGCCCTTCGGCGACAACAAACACTACTGCGCGCTAGTAAGGACAGAGACATGCTGATGATGTTCGGTGCTGAGCCAAGTGGATTCTCCGTGTCCCTTGGCCTTTTCCTGCTCTTCTTGGTTCTTCTGTACTGGTATTCCACCTCCCCCTATTCGGTCTTGCAGCGATGTGGCATCCGACACCCCAAACCAGCTCCGTTCTTCGGAAACATGATGCTGTTTCGACATGATTTTTTCAAAGCTCAGAAGGACCTGGTCAAGCAGTACGGCCGAGTGTGTGGTTATTATCTAGCCAGACAGCCAGTGGTGGTGATAGCTGACCCAGACATGCTCAGACAGGTTATGGTGAAGGAGTTTCATAACTTCCCAAACAGAATGttatttaggATGGCTACAAAGCCGATGAAGGACAGTCTTGTCATGCTGAGGGATGAACAGTGGAAACGAGTACGCAGCATCCTCACACCAACCTTCAGCGCAGCCAAGATGAAAGAGATGGTCCCTCTTATCCATGTAGCTACAGAAACATTACTGAACAACCTGAAGGCTTACGCGGAGTCTGGAGAGAGTGTTGACATCTACAGGTGTTTTGGTTGCTTCACTATGGATGTGATAGCAAGTGTGGCGTTTGGCATGCAAGTGGACTCCCAGAACAACCCCAGCGACCCATTTGTGCACTACGCCTCCAAGTTCTTTGCCTTCTCTTTTTTCCGACCCATcatgttcatcttcaTGACTTTCCCGTTCCTGATTGGGCCGTTCGGTGGCTTGATGCGAGATAAAGACAGCAGTGCGATGAGCAGGTTCTTCACCACTTGCATTCAGAAACTTATAAAGCAGAGGGATGAATTGCCACCCAGTCAGAGGCGGAGGGACTTCCTGCAGCTGATGCTGGATGTGAGGAGCAGTAAGGAATGTGTATCCCTGGATCACTTTGACGTGGTCAATCAAGCAGATGAGCAAGTTGTGGCTGACGGAAAGTCAGAAAGCTCCCGTGAGTCGGCAAAACGCAGCCAGCAGAAAAGGATGATGACGGAGGATGAGATCGTAGGCCAGGCCTTCATCTTCCTCGTCGCTGGCTATGAGACAAGCAGTAACACTCTTGCATTCGCCTGCTACCTGCTGGCCACCCACCCGGACTGTCAGAAGAAAGtacagagagagctggacaACTTCTTAAGCAGACACGGCTCCGTAGATTACACTAATATTCAGGAGCTGAAGTATTTAGACATGGTGGTGTGTGAGACTCTGAGACTGTATCCACCAGCATTTAGATATATGCGCTCTATTGAGCATGACTGTGTGGTGAATGGACAGTTGCTGCCTAAAGGAGCTACACTAGAGATCCCAGCAGGCTTCCTGCATTCTGACCCAGAGCACTGGCATGAGCCGGAGAAATTCATACCTGAAAGGTTTACCCCTGAAGCCAAGGCCAGTCGACACCCTTTCGTGTACCTGCCATTCGGAGCAGGGCCTCGCAGCTGTGTGGGCATGAGACTGGCCCAGCTGGAGATTAGGATGGCACTGGTCAacatctttaaaacatttaatctgATGGCATGTGAGGACACCGAgGTTCCTCTTACTTTAAAGTCAAATACCACCCTCGGACCCAAGAATGGAGTTTTTGTCAAAATTGCCAAGAGAGAGAATTTTGGTGATGCACAAAAATAGACAGTGATTCCTGTGAGCCTgattttaagaaagaaaaaaaaaacttctataaTCTTGTGATTAGTATGTGAATAATAGAGGATATTACTgatataattttgtaaaaatacaCCATATGAATATTCAGCCTAATTATATAAACTGATGTTCCTAATCTCttttacatttgatttcttGGAAATAACAAATTGCTTTACTCATTGTAAATctacacaaaaggacaaaatCTTATCATATTGGGATCAAGACCAAAGAATAACAACAGAAGGGACAATAGGGTGGGATTCAtcaaattaatgattaatggttaatgattcatttcaaatgaCTGTAGATTGCACTGTCATGGCAcctgtgtattaaaaaaattctaattcatAGGCA
>XM_034305376.1
CAAAATACACGCGCGCGCGTCAGACATGCTGATGATGTTCGGTGCTGAGCCAAGTGGATTCTCCGTGTCCCTTGGCCTTTTCCTGCTCTTCTTGGTTCTTCTGTACTGGTATTCCACCTCCCCCTATTCGGTCTTGCAGCGATGTGGCATCCGACACCCCAAACCAGCTCCGTTCTTCGGAAACATGATGCTGTTTCGACATGATTTTTTCAAAGCTCAGAAGGACCTGGTCAAGCAGTACGGCCGAGTGTGTGGTTATTATCTAGCCAGACAGCCAGTGGTGGTGATAGCTGACCCAGACATGCTCAGACAGGTTATGGTGAAGGAGTTTCATAACTTCCCAAACAGAATGttatttaggATGGCTACAAAGCCGATGAAGGACAGTCTTGTCATGCTGAGGGATGAACAGTGGAAACGAGTACGCAGCATCCTCACACCAACCTTCAGCGCAGCCAAGATGAAAGAGATGGTCCCTCTTATCCATGTAGCTACAGAAACATTACTGAACAACCTGAAGGCTTACGCGGAGTCTGGAGAGAGTGTTGACATCTACAGGTGTTTTGGTTGCTTCACTATGGATGTGATAGCAAGTGTGGCGTTTGGCATGCAAGTGGACTCCCAGAACAACCCCAGCGACCCATTTGTGCACTACGCCTCCAAGTTCTTTGCCTTCTCTTTTTTCCGACCCATcatgttcatcttcaTGACTTTCCCGTTCCTGATTGGGCCGTTCGGTGGCTTGATGCGAGATAAAGACAGCAGTGCGATGAGCAGGTTCTTCACCACTTGCATTCAGAAACTTATAAAGCAGAGGGATGAATTGCCACCCAGTCAGAGGCGGAGGGACTTCCTGCAGCTGATGCTGGATGTGAGGAGCAGTAAGGAATGTGTATCCCTGGATCACTTTGACGTGGTCAATCAAGCAGATGAGCAAGTTGTGGCTGACGGAAAGTCAGAAAGCTCCCGTGAGTCGGCAAAACGCAGCCAGCAGAAAAGGATGATGACGGAGGATGAGATCGTAGGCCAGGCCTTCATCTTCCTCGTCGCTGGCTATGAGACAAGCAGTAACACTCTTGCATTCGCCTGCTACCTGCTGGCCACCCACCCGGACTGTCAGAAGAAAGtacagagagagctggacaACTTCTTAAGCAGACACGGCTCCGTAGATTACACTAATATTCAGGAGCTGAAGTATTTAGACATGGTGGTGTGTGAGACTCTGAGACTGTATCCACCAGCATTTAGATATATGCGCTCTATTGAGCATGACTGTGTGGTGAATGGACAGTTGCTGCCTAAAGGAGCTACACTAGAGATCCCAGCAGGCTTCCTGCATTCTGACCCAGAGCACTGGCATGAGCCGGAGAAATTCATACCTGAAAGGTTTACCCCTGAAGCCAAGGCCAGTCGACACCCTTTCGTGTACCTGCCATTCGGAGCAGGGCCTCGCAGCTGTGTGGGCATGAGACTGGCCCAGCTGGAGATTAGGATGGCACTGGTCAacatctttaaaacatttaatctgATGGCATGTGAGGACACCGAgGTTCCTCTTACTTTAAAGTCAAATACCACCCTCGGACCCAAGAATGGAGTTTTTGTCAAAATTGCCAAGAGAGAGAATTTTGGTGATGCACAAAAATAGACAGTGATTCCTGTGAGCCTgattttaagaaagaaaaaaaaaacttctataaTCTTGTGATTAGTATGTGAATAATAGAGGATATTACTgatataattttgtaaaaatacaCCATATGAATATTCAGCCTAATTATATAAACTGATGTTCCTAATCTCttttacatttgatttcttGGAAATAACAAATTGCTTTACTCATTGTAAATctacacaaaaggacaaaatCTTATCATATTGGGATCAAGACCAAAGAATAACAACAGAAGGGACAATAGGGTGGGATTCAtcaaattaatgattaatggttaatgattcatttcaaatgaCTGTAGATTGCACTGTCATGGCAcctgtgtattaaaaaaattctaattcatAGGCA

Function

symbol description
tbxas1 Predicted to enable thromboxane-A synthase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart. Human ortholog(s) of this gene implicated in Ghosal hematodiaphyseal syndrome; cerebral infarction; and platelet-type bleeding disorder 14. Orthologous to human TBXAS1 (thromboxane A synthase 1).

NR:

description
thromboxane-A synthase-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K01832 TBXAS1, CYP5A; thromboxane-A synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927328.2 True 2115 mRNA 0.45 14 9349891 9410543
XM_026927329.2 False 2113 mRNA 0.45 14 9349891 9414387
XM_034305376.1 False 2035 mRNA 0.46 14 9349891 9414140

Neighbor

gene id symbol gene type direction distance location
LOC113534316 LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720 coding downstream 129687 9217244 ~ 9220204 (-)
LOC113534306 LOC108264223 coding downstream 138961 9205345 ~ 9210930 (-)
tat tat,LOC106573680 coding downstream 148074 9193351 ~ 9201817 (-)
zgc:56622 LOC108264227,LOC108411019 coding downstream 158819 9186380 ~ 9191072 (-)
meak7 tldc1,LOC104945682 coding downstream 181617 9162522 ~ 9168274 (-)
fgd4a fgd4 coding upstream 210676 9625063 ~ 9692085 (-)
bicd1a bicd1,LOC107722484 coding upstream 279690 9694077 ~ 9732778 (-)
LOC113534539 LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 coding upstream 583426 9997813 ~ 10018683 (-)
mical3a mical3a,LOC108264267,LOC108414616,LOC107673136,LOC107559327 coding upstream 881464 10295851 ~ 10398875 (-)
wfdc1 wfdc1,LOC102778323,LOC107553961 coding upstream 1011353 10425740 ~ 10439871 (-)
G96484 NA non-coding downstream 11107 9326681 ~ 9338784 (-)
G96421 NA non-coding downstream 263220 9084327 ~ 9086671 (-)
G96220 NA non-coding downstream 587295 8754558 ~ 8762596 (-)
G96170 NA non-coding downstream 719768 8629900 ~ 8630123 (-)
G96166 NA non-coding downstream 736877 8612815 ~ 8613014 (-)
G96679 NA non-coding upstream 2635 9417022 ~ 9417414 (-)
G96677 hipk2 non-coding upstream 3199 9417586 ~ 9503941 (-)
G96840 NA non-coding upstream 405000 9819387 ~ 9884455 (-)
G97054 NA non-coding upstream 657166 10071553 ~ 10095358 (-)
G97172 NA non-coding upstream 954876 10369263 ~ 10370417 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other downstream 134076 9174655 ~ 9215815 (-)
LOC113534821 LOC108264660,LOC108443050 other downstream 871554 8395812 ~ 8478337 (-)
shank3a shank3,shank3a other downstream 1655464 7438091 ~ 7694427 (-)
LOC113534453 LOC108264337,LOC108264339 other downstream 2192403 7146500 ~ 7157488 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 3068361 6197243 ~ 6281530 (-)
LOC113534661 NA other upstream 336495 9750882 ~ 9772020 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other upstream 407846 9822233 ~ 9918481 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other upstream 852591 10266978 ~ 10294823 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other upstream 1112723 10527110 ~ 10581902 (-)
pdf pdf,spata2l other upstream 1758300 11172687 ~ 11179608 (-)

Expression


Co-expression Network