synm (synm)


Basic Information

Item Value
gene id synm
gene name synm
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14520667 ~ 14529857 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927335.2
tcTCATAGCTCGATTCACTTAAACGTGTCGTTCGTAAGAATCGAATCTCTGAAGTGATTCGTACTGTCCACCACGTCGGATTGGGTAAGGTTGTATAACTGAGGTCAGAACAGTCTGTACTGTCTATCTCTGTCCACATGGGAGAGCCAGATCCCATCACAGTGctcctgaagtgttttcctcacctctgtgtgtgaggagtggATCATTAGTGCGCCTCCCTTCTGCACCTGAGAAGTCTGCTCTAAcctctcagcagcagcagcagcagcagcacagcgCGTCCTGCACACTTACCCATGAGAACGAAGGCATAGTTTccttcttcccttttttttccatcacgcttttttatttcacaaccTTACCAAGAACATGTTTCACTTCAAGAGGTCGTTCGAGGGCGAAAAGCTTCAGCTGCAGGAGCTGAATCAGAGGCTGGGGCAGTATCTATCCAGAGCGAAGCTGTTGGAGCAAGAAAACGCTCGCCTTGTAGCGGAAATAAACGCGATCAGGCATAACAGGTCTACAGAATGGGAGGACACACGCATGGCCGAgctgagagagatgagaagacTGGTGGATCAACTCTGTTGGGAAAAATCCAGGgcggagatggagagagagaagctgcGCAGAGAGCTTGAGCTGATCCAGGCCATGCGCTCTGACGAGTCCGCGTTTAGTAAAGGTCTGGATGGTGAGCTGAAGGGCTGTGAAAAGCAGCTGCGCCATGCTCTTCAGACCAACAGCGCGCTAGAGGAACGCCTGCTCCAGCTGCAGAATGAATGCGCGCTTTTGCATGATGCTCACAGGAACGAGATTGCGCACCTCAGGAGCCAGGGTCACACCCGGGTCTTACCTGTTGTCACTCGGACGCATCACGGCCCACCAGCGTTTAGTCCAGAAGAAGTCCAGGAGTATGCGCGTAGCCTGTCTGAAAGCTGGATGGAGACTTTTGAAATGTATCGACAGCAGGTTGAGGAGATGGAAGAATCCATAAAAGCAGATCAGGCCAGGCTTGAAGATATTAGAAGAGAGAAGGTGGAGTATGCTTCAGAGCTGAACAAGCTGAGGGCGGAAATGGAGAAACACAGCCAGATGCAGCTGGAGCTCGAGGAGCATCTCATGAACATGCAAGAAAAGTTCAGAAAAGATCTCAGTCAGTATCAGATAATTGTTGAAGAACTGGAACATGAGCGTATGCTTCTGGCCAACACCATTACAGAAAAGCTGAAGGATCATCATGACCTCCTACAGGTCAAAATGGGGCTTGGCATGGAAGTGGCTGCATACAGGGCACTGCTAGAAGGTGAAGGTAAACATGCTCAGATGAGGTCTGACCAgtattcaagagagagaataatagATATCAAATTGCCAGCCCATCCTTACACTCCAAGAGTCTCTACCATCACAGCCAGTCGACCAGAAGTGAGAAGGAATTTAATAGGGTATGATGTCTGGAATGTAGAACCCATTTCCAGCATGAGAACCTCCACTGTATCCAGTCAGTATGATTCCCACAAAACCTCCAGGATTTTGCCTATCACTATTTCAAACCATGCCCAACAAAGTCCTGCTGCAAGAAGAGACATGATTGCTTTCAGCAAAGCAAAACAGGCTTCAGTTACACCAAGTGCAGCCAAACCTGATGTCTCTGCTAGTAAGACTAACAAAGAAGTGATGGAAGAacagaaggtaatcatcaaagGTGTGTCTAAAAGCCAACCAAGGAGTTCGCCTGATCTTTTCCAGacagaaatacaaaacaaatcatTCCCCACTACCTCATCAGcaatagaaataaaatcagtgaGAGTTGTGGCACCACCTATGATGAGCCTGAACACTAATGCAGAAACCCATCAGAAAGTTGTTGAGGAAGATGTTAAGGAAGATGAAAGAAAAGATCAGAGTACAGAAGCAGATCATGCCAAAGCAACAGTGCAACCTGATGCAACACCATTTATCCAGCATAAGGAATCCAACCAAGAAGATAAGACAGATTTGAAAGATTCTGGAAATGTGGGACCAAAGGTATTTGCAGGTGAGGAAAAAGTTTTGGACTCAGTGTCCATGGAAGAAATTATTGAGAAGGTCATAAAGCCTGCTGGCTTTGATACAAATCTCAGTTCATCTGCTGACTCAAAGATCACATACCATGTAGAGAAAACAGAGCAAGAGGATGGAAGCACCAAGACTCAGATAGTCCTGCAGTCAAAAGTGGAAGAAGACCTGGATGTGTCAGACAACTCGGCTCTTGATGAACTCCTTAGTAAGGGGGTACATAAAGTCTCTCTGGAGGATATTGAAGGAACCCCAACAGGAAGCATGATTCAGAACCTTCTGCGTCTTGGTCTTGAAGGTGAAAGCTTAGAAAACAAGTCGGTTAAAGTGGAGATAATGGAGGCACCATTGGAATCTCATACCGATGAAGGGGAAGGTGAAATTGAAGAGACTGTAGAAGTTGAGTCCAAAGCGTACTTCCAACCTTCATCAATGTTCTTTCACATTGAAGAACCAGAGAATGAACCTCAGCCAGCTAAACAACATGAAAACACTGACGAGTCTATGAAAGCCTCAGAGTATGTAAAGAGTGGATTTGTGCAGGTGCAGGAAGTGTCCAGAGATGAGAGCCTCCCATACTATGCTCAGGGCCAAGAAACACAAGAATACTTTGTTTCCACCCCTGAAGAGAACATGTCTGGTTCAGAGGAGGGTGGAGGATTTATGTCTTATGGACATTATGGAGTGGTGGAAGACCTTTCAGATGAGAGATACTACCAGGAAGAAGGTCTGCCTACAAAAAGGAGGTACTCTGATGAAGGGGAAAATAACAGGGAGTCACCTGAATATGTCAAAAGAGACACCACTGGAATTCCAGAGTGTATTATAGAAGAGGAGGTGCATGTTCCTCCCAGAATTCAAGAGTCTATGCTGGAGATCCTGAAAGAAGAGTCATTGGACCCCAGAGAACAGCTAAAGGGAGCACTGGAGCAGCTAGAAGGCACTGTGTCTGGAGAGCTAAAAGAAGAACTTGTTTCTTTCACCAAAGCTGGTCAAAGTTCTGAGAACCTGTCTGTTAACATCCAGAAAGTGCAACAATCTCCAGACAATGGAACAATGACCTTTGTGGCAGAGCTTAATATTTCCCAGAGTCTGGAGGATTCTGGACTCTTGCAAAATGAGGCAGATGACCTGTTACAGGAACAGGTGATGGCAGCACTGCAGTCCTCAAGCTCTGACCTCCACCAGGCGCACAGTGCTGAAGCTGATGATGAGTATACCATCAGACTTTCCACAGAGGAGGTCCAAAAAGGGGAAATGCCATGGATGTCCAGCCTTGAGGAAACCGAAGCTTTGAGCTCAGGTAGTGAAGTTAGCAAGACAGAGAAGGTCATCAGGCTGGGGCCTAATGAGACATCCTTCACGTTCCAAATGGGTATTAACAACAGCGCGTCTGCGATAGGCAAAGAAGGGATGGATTCTCAAGATCAGAAAGGCAATGGAGCCAATGTGCAAGAGTTTGTACAGACCCAGAAGACTGACCCTTCATTAAAAATCTACCAGGAGAAAAGAATAGCTACTGTTTATCTTGAAAGCCCCCAGGAGGACTAACTGAGATCTAGATAAAACCACCTATAACTGAGATCCAAATAAAACCACGTATTATATAATCAGGTATGGAGAAATGTTTGTTACTCTCATTGTTTTTACAATACATATAGAAAGCAGCACATATCAAGGACTTAAAGCTTTACTTTCTACACAATTAGATTTACGAGTTTAGACCCTCTTGGctctgtgccttttttttttttttttttttttttttttttttttttttttttttgctgtgtaggCCTCACGGAATTTGTCACATTTATTACATGTCTTGTCTAGAATgacatgtaataaaatgtactgAAGTTAATAAAAGAGCATTTAATATCATTGATTACAGGATATCACTGTCTCTTGTAACACTACACAAATTATTTTAAGCTACACTTCAATTCAGATAGAACATACTGCTAATCCTGTATTCAAATCACTGCGTTATGTTTCTGGGTCATGTTTCTACTGTGTGTTCTTTAGTATATGCACTGTCATCTTTTACTTTAATGATGATACTGTTTTGctgtaacacatttttaaattactgtCATCTACACTTAATAAGGTCCAGAGTTTAATCTAGTATAAATTCAcacatattttgtatttatgacACTAAGAAAACTTAAAAACACCTTAACAAACATAGAGCAGAGGTGCCTGTTTCTTTTGCCTGTGCCTATTCTGTGTGAGCAAAATTAGGTGATTTTCCTGCTCAAAGACACCCATAAAACTGTTAATTAACTGGTGAATAGAATTATGTGTCTCTGAAGGAAATAACTAAACACTGCTGGATTCTAGTGCACTAAAACTGGAGCTCCATTTTATTTTGAGTACTGATTGTTGTTTATAGCCCCTAATCTGACTTGATTATTGTCAGAATCTGGCTCTGTGACTACCAGATTTCAGACTATCCTTCTTGTCCTTCTTAGGTCCTATAATCCTTAAATAACATTAGCATGGCATTCACTAATCCAGCCTCCCTGCGCTTTCAGCGTAAGGGCCTTTCCATTGTTCAGGactgagtgagacagagagatgaaaaagtgaaaaagcagGTTTCTCTTAAAAAGCAACAGTGTCAGTTTAGTGGTCATTGAGGTAGTGTCTAACAGCATGTTTGCATAACAAATGTATTTTGGGATCCTTACTCATGCCTCACATGGTGGTAATGGAGTGagtgagaagaaaagagagagggtgACGCCAGTTTATGTCCAGTAGGACTCTTTTTAAAGTTCTGTAGTAACATGCGTCCAAaagaggtgtgtatgtgtgggtatTTATGAACATGTGTTGATGAACATTATTATTTGCAACAATAAAtaactatactgtactatagtTATTCGATAGTAATAAATATACTCTTCTCTGTTTCACACTAATGCTCTCTTGGAATCAGTTTTGTTTGGTTGGCTCCAAAAAATTTTTCGCcctgctgtaatttttttttttttttttttttttgtcacctggTTTGTCACTGGTGGTAGTGTTGTGCCTGTTCCTAATAAtgatattatgaatatataacACTGTAATATGAGTAAACAAAAGTTTTGTTTA

Function

symbol description
synm Predicted to be located in intermediate filament. Orthologous to human SYNM (synemin).

NR:

description
synemin

GO: NA

KEGG:

id description
K10376 DMN; desmuslin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927335.2 True 5190 mRNA 0.43 4 14520667 14529857

Neighbor

gene id symbol gene type direction distance location
cttnbp2 cttnbp2 coding downstream 18437 14454337 ~ 14502230 (-)
asz1 asz1 coding downstream 97890 14401868 ~ 14422777 (-)
wnt2 wnt2,LOC107708232,LOC107738769,LOC107596948,LOC107660945 coding downstream 122399 14389899 ~ 14398268 (-)
bcl2l13 bcl2l13 coding downstream 135883 14366807 ~ 14384784 (-)
ighmbp2 ighmbp2 coding downstream 196229 14315835 ~ 14324438 (-)
igf1ra igf1r,igf1ra,LOC107672255,LOC107596941 coding upstream 6222 14536079 ~ 14629951 (-)
anpepa anpep coding upstream 128113 14657970 ~ 14667731 (-)
si:dkey-12e7.1 si:dkey-12e7.1,LOC108264421,LOC108427511,LOC103035474,LOC107596938,LOC107583743,LOC107738678,LOC105904526 coding upstream 140456 14670313 ~ 14673362 (-)
syt19 LOC108263939 coding upstream 190028 14719885 ~ 14729606 (-)
si:dkey-12e7.4 LOC108264682,LOC108424351,LOC106560815,LOC107578981 coding upstream 200263 14730120 ~ 14735155 (-)
LOC113534271 NA non-coding downstream 883 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 67560 14448856 ~ 14453107 (-)
G99401 wee2 non-coding downstream 165048 14349718 ~ 14355619 (-)
G99408 NA non-coding downstream 186533 14328927 ~ 14334134 (-)
G99202 NA non-coding downstream 485126 14035267 ~ 14035541 (-)
G99453 NA non-coding upstream 3963 14533820 ~ 14536010 (-)
G99482 NA non-coding upstream 71366 14601223 ~ 14603472 (-)
G99493 NA non-coding upstream 118221 14648078 ~ 14648993 (-)
G99780 NA non-coding upstream 619546 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 630346 15160203 ~ 15168426 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 173659 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 958093 13550680 ~ 13562574 (-)
G98770 NA other downstream 1468356 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2096689 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2115386 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 817309 15347166 ~ 15357563 (-)
G101178 NA other upstream 3657590 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 5450212 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5866009 20395866 ~ 20416574 (-)
G102566 NA other upstream 6423745 20953602 ~ 20966910 (-)

Expression


Co-expression Network