pgpep1l (pgpep1l)


Basic Information

Item Value
gene id pgpep1l
gene name pgpep1l
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14528876 ~ 14533258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927336.2
CTTGAGCCTGCAGCACAGTGGGCCTTCAGGCCAGGAGTGGAAAATCACAGGAACTCATATTCTTTTGCAAATGAATCCCCCAGAAAGAACGAGCTGTTCATGAATCACTCACCACGACTCCGAGGAATCGAGCTACAAGTTTTAATCGCCTTGACAAACAGAAGTGCAGCTGAAATTTCAGTTTCGAAACTTCACTGAGGGATGGACTCTTGCAAGCCAGAGCTGATTGTGGTTACAGggtttggTCCATTCCGACAACACTTGGTAAATCCAAGCTGGGAAGCAGTTAAGGGTTTAAAGAGAATGGGCCTTGGAGACAACATTGAGATTCACATTGTAGAGATTCCTGTGTGTTACTCAAAAGCTCACCAAGCTATTGCTGAATTATGGCACAATCTGAAACCAAAGGTTGCTATCCATGTGGGCATAGCCTCAGGAACCAAATGCATTATTCTGGAACAAACAGGCAAGAACAGTGGCTATAAGGACAGAGATGTGTGTGGCATTTGTCCAGCTGATAACTGCTGTATTCGAGGAGGAGCAGAACGGTTGGACTCCATTATAGACATGAGGTCAATTGCCAAGCACTTGAAAGGGCTTGGACTGGATGTGATCTACTCTAGGGATGCTGGGAGGTACCTGTGTGATTTTGTATACTATCTCTCCCTCAATTATGGGCAGAGGAGAGCAGCACTCATCCATGTGCCTGCCTGTGGCAGTCTGGCAAGCCCAGAAAGACTGGTGCCTCAGCTCCAGACCATTATCCAGGTCATGTTATGCCAGCTTGACACACAAAGGATCTGACCTGCAGCATCCGAATGCAGATGTAGCCAACAACACATGAAGAATTAACTAGACTATTTAAgcactatttaaaaaacaccTGAATGTATTAATAAAGACAATAAGTAAAACTCAA
>XM_034305164.1
CAACCTGCTGTCGATACATTTCAAAAGTCTCCATCCAGCTTTCAGACAGGCTACGCGCATACTCCTGGACTTCTTCTGGACTAAACGCTGGTGGGCCGTGATGCGTCCGAGTGACAACAGggtttggTCCATTCCGACAACACTTGGTAAATCCAAGCTGGGAAGCAGTTAAGGGTTTAAAGAGAATGGGCCTTGGAGACAACATTGAGATTCACATTGTAGAGATTCCTGTGTGTTACTCAAAAGCTCACCAAGCTATTGCTGAATTATGGCACAATCTGAAACCAAAGGTTGCTATCCATGTGGGCATAGCCTCAGGAACCAAATGCATTATTCTGGAACAAACAGGCAAGAACAGTGGCTATAAGGACAGAGATGTGTGTGGCATTTGTCCAGCTGATAACTGCTGTATTCGAGGAGGAGCAGAACGGTTGGACTCCATTATAGACATGAGGTCAATTGCCAAGCACTTGAAAGGGCTTGGACTGGATGTGATCTACTCTAGGGATGCTGGGAGGTACCTGTGTGATTTTGTATACTATCTCTCCCTCAATTATGGGCAGAGGAGAGCAGCACTCATCCATGTGCCTGCCTGTGGCAGTCTGGCAAGCCCAGAAAGACTGGTGCCTCAGCTCCAGACCATTATCCAGGTCATGTTATGCCAGCTTGACACACAAAGGATCTGACCTGCAGCATCCGAATGCAGATGTAGCCAACAACACATGAAGAATTAACTAGACTATTTAAgcactatttaaaaaacaccTGAATGTATTAATAAAGACAATAAGTAAAACTCAA

Function

symbol description
pgpep1l Predicted to enable pyroglutamyl-peptidase activity. Predicted to be involved in proteolysis. Predicted to be located in cytosol. Orthologous to human PGPEP1L (pyroglutamyl-peptidase I like).

NR:

description
PREDICTED: pyroglutamyl-peptidase 1-like

GO: NA

KEGG:

id description
K01304 pcp; pyroglutamyl-peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927336.2 True 919 mRNA 0.45 6 14530483 14533258
XM_034305164.1 False 801 mRNA 0.46 5 14528876 14533258

Neighbor

gene id symbol gene type direction distance location
cftr cftr,LOC107738689,LOC107596947,LOC107583749 coding upstream 75800 14426532 ~ 14453076 (+)
bida NA coding upstream 164071 14355893 ~ 14364805 (+)
wee2 wee2 coding upstream 173956 14349167 ~ 14354920 (+)
agk agk coding upstream 193553 14325076 ~ 14335323 (+)
rapsn rapsn coding upstream 214059 14304663 ~ 14314817 (+)
fam169b fam169b coding downstream 107702 14640960 ~ 14648967 (+)
arpin arpin coding downstream 120657 14653915 ~ 14657137 (+)
kmt5b kmt5b,LOC108264420 coding downstream 143286 14676544 ~ 14686478 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368 coding downstream 162519 14695777 ~ 14709427 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding downstream 251682 14784940 ~ 14877479 (+)
G99276 ighmbp2 non-coding upstream 210222 14317597 ~ 14318654 (+)
G99261 NA non-coding upstream 266359 14261441 ~ 14262517 (+)
G99260 kif23 non-coding upstream 268134 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 538723 13989942 ~ 13990153 (+)
G98996 NA non-coding upstream 604563 13891424 ~ 13924313 (+)
G99362 NA non-coding downstream 97077 14630335 ~ 14631361 (+)
G99516 LOC108263939 non-coding downstream 192360 14725618 ~ 14725938 (+)
G99518 NA non-coding downstream 196726 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 493229 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 522009 15055267 ~ 15058771 (+)
G99341 synm other upstream 4396 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 486424 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 572525 13932539 ~ 13956351 (+)
G98972 NA other upstream 739486 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 813110 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 767224 15300482 ~ 15346146 (+)
G100306 NA other downstream 1816199 16349457 ~ 16349787 (+)
G100345 NA other downstream 2066999 16600257 ~ 16601067 (+)
rgma NA other downstream 2124343 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2867168 17400426 ~ 17443468 (+)

Expression


Co-expression Network