si:ch211-212o1.2 (tmem189,si:ch211-212o1.2,LOC108264382,LOC107672277,LOC107738740,LOC107740306,LOC107583780,LOC103466733,LOC100695703)


Basic Information

Item Value
gene id si:ch211-212o1.2
gene name tmem189,si:ch211-212o1.2,LOC108264382,LOC107672277,LOC107738740,LOC107740306,LOC107583780,LOC103466733,LOC100695703
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12948587 ~ 12984645 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927394.2
GACCAGACCGTCAAGAGGAGGAaaacttttccaaaatattCACACAATTTGCTTACACACTAAGCAACGTTACGAGCCAGTTTTACACTCCGGCCTTTAGGCGTCTCCCGACTGTAAAAAGCCTGTAAAAGAAGAAACGTGATGAATTGCACATACGCGAGATCATTTATGTGACGGACCACTTGGTGCGTAGCTGTTTTAGTTCCGGGTGTGTGTAGCTCCGTTAGGCTAGCCACCGTTAGTGACTGTAGGTGTGTCACTGTACAGCAGCGCTACTTCCCACCGAGCGCATAGGTACAAAGTAGCCATTTATGCATCGTACCTGAGAAGAAGTTCCGTGACGAGGGAGAGAATGGCGGCAGCGTTACTGTCTGAGACAGAGATCCGGCACCGCTCTATGGCGGAAGAGGACCCGAACGGGAACGAGCACGGCGCGGCCGCCCGCAGTAGCGCACCCCGCTGGGGACCGCAGCACGCCGGGGCCCGCCAGCTCGCCCAGCTCTACTCCCCTGGAAAAAGGCTACAGGAGTGGGTCTGTGTAATCTTGTGCCTCTCGCTCTTCGCTGTCaacttcttcttcctcctcatcaACTTCTCCGGAGTGCCCATCTACAGAATCATCTTTGGCATTGTGGCCGGTATCGTGACTGCAGACTTTGCCTCTGGAGTCGTGCATTGGGGAGCTGACACCTGGGGCTCTGTGGACATCCCCATCATTGGGAAGGCGTTTATCCGTCCATTCCGGGAGCACCACATCGACCCTACGGCCATCACGCGGCACGACTTCATTGAGACTAATGGGGATAACTGCATGATCACCATCCTGCCTCTCGCCCACATGGCCTACAAGTTCCTGTCCTACACACCAGATGCCCTTGCCGAGTCCTACCCCTGGGACTGTTTTGTGTTTGCGCTTGCTGTCTTTGTGACGATGACCAATCAGATCCACAAGTGGTCACACTCCTACTTCGGCCTGCCACGATGGGTCACTCTGCTGCAGGACTGCCACCTAGTGCTGCCCCGCAAGCACCATCGTATCCACCATGTGTCCCCTCATGAGACCTACTACTGCATTActacaggttggcTGAACTACCCTCTGGACCAGATAGGCTTCTGGAGGAGGATAGAGTGGTTGGTCGAAAAGCTAACAGGACAGAAGCCACGCTGTGATGACATGGCCTGGGCcaaaaagacagagtgagatgATAACGGGACTGCAGCACCCTCATCCCTcgctcctctcctcctctgagCTGAGGGGGAGCCTCTTGGAGGGAGAAAAGCAGAATATGGGCCTTACCTCTGACCCCTAATCCACCCTTAATCCCCCCCTTTCTCTCCATCACTATAGCACAGAAAATTTCCGCTGCTGAGGCCTTCACCTGTCTCTAAAGTCTGCAACACACAAGCCGTCTCTGACTCCTCCATGTCTCATCTGATGGTTTTCAttcacactccctcacacacacagcagaaagagaaagcTGAATTTAAGGCATGTGTCTAGCAGCACAGCAGTAAAAACATTAGTGATGAGTAATAGTTGATTAGTAATAGTGAATAATTTTGTACTAATTTTCCCTCTGCTTGTCGTAGTGGCTTTCTCATATTGTTCATCCTCTGGAGGTTGGGCTCTCCAGGGGCCAGGaaatagatatatttttattgtatttgctTGCCATCTGATTTGGGGTCAATCAAGAAATGGTTTTCTATATCAGCACTCCATTTGTCCAGACAGACAGCTTAAACGATGTTCTGCTTTTCTTTAGATGTTACATGTCCTCCATTTTTGTCTGAAGACGATGTCTGTGAGTAAAAATGGAGGGAAGCGAGTTTTGTTGGTCAGTCATGTAATCTGTGCTTTGGTGAATGTTTCCATGTCTATACATACCACAGACCAGATTGCAGATTTTAGATTGCAGGACATGAGCACTTAAGACCTCTGAACGAGGACGCCTGATTCGTTTTTGGACTAGCTGTAGCAGTCcaactaatatttatttaaaaaaaaaaaaaaaacatactgaatcTTGCAAGCTTGCACTTGGTTTTGGTCTGTGAATTCACAGCGGCACTGCTGAGACAGAACCAGAACAGCGGAAGAGCTGTTTCAATTATCCTTAATTCTGCACACATGATCATAACTGACTCTTGAATCCATGAAGCAGAACAAGGTGTAAGCTTCATGTCGGTTGGTACCAGGCTAATGCTGACTAATCctactgtatttaaaaacacTCCCGGCGTTTCCacctaatctctatccaccGCATATGTAGCATTATGCACTTGCAACGGATGGGAACTTCAGTGCGTTTTCCTGTACTGAGATGATGTaaaactcattcacactttAATTCTGTgaagaaatgtataaaatatatgacTAAAAGTAAAACTGTTACATTTTAACAATAAACTTCTTTAACTTTAAGCTGTTCTTATCCAAGAAGCAATATATTAAAGTCCTTCCGATTTCTTATGCTTTTATGAAGGTTGTGCAAGGAATCTGATTTTCTGTTCTTCATGCAATACATATGCGATAGACATACATTAGGTtactggaggtttttttttttt
>XM_034305410.1
AACATTGACCAGACCGTCAAGAGGAGGAaaacttttccaaaatattCACACAATTTGCTTACACACTAAGCAACGTTACGAGCCAGTTTTACACTCCGGCCTTTAGGCGTCTCCCGACTGTAAAAAGCCTGTAAAAGAAGAAACGTGATGAATTGCACATACGCGAGATCATTTATGTGACGGACCACTTGGTGCGTAGCTGTTTTAGTTCCGGGTGTGTGTAGCTCCGTTAGGCTAGCCACCGTTAGTGACTGTAGGTGTGTCACTGTACAGCAGCGCTACTTCCCACCGAGCGCATAGGTACAAAGTAGCCATTTATGCATCGTACCTGAGAAGAAGTTCCGTGACGAGGGAGAGAATGGCGGCAGCGTTACTGTCTGAGACAGAGATCCGGCACCGCTCTATGGCGGAAGAGGACCCGAACGGGAACGAGCACGGCGCGGCCGCCCGCAGTAGCGCACCCCGCTGGGGACCGCAGCACGCCGGGGCCCGCCAGCTCGCCCAGCTCTACTCCCCTGGAAAAAGGCTACAGGAGTGGGTCTGTGTAATCTTGTGCCTCTCGCTCTTCGCTGTCaacttcttcttcctcctcatcaACTTCTCCGGAGTGCCCATCTACAGAATCATCTTTGGCATTGTGGCCGGTATCGTGACTGCAGACTTTGCCTCTGGAGTCGTGCATTGGGGAGCTGACACCTGGGGCTCTGTGGACATCCCCATCATTGGGAAGGCGTTTATCCGTCCATTCCGGGAGCACCACATCGACCCTACGGCCATCACGCGGCACGACTTCATTGAGACTAATGGGGATAACTGCATGATCACCATCCTGCCTCTCGCCCACATGGCCTACAAGTTCCTGTCCTACACACCAGATGCCCTTGCCGAGTCCTACCCCTGGGACTGTTTTGTGTTTGCGCTTGCTGTCTTTGTGACGATGACCAATCAGATCCACAAGTGGTCACACTCCTACTTCGGCCTGCCACGATGGGTCACTCTGCTGCAGGACTGCCACCTAGTGCTGCCCCGCAAGCACCATCGTATCCACCATGTGTCCCCTCATGAGACCTACTACTGCATTActacagGTCGAACCATATCAAGGTTTGCAAACCAATGTGGCCAGATCAGGGACTCCTGGACCAATTTTCTAATATGAAATCTTTTTTCTCTACACTTTTCTTTTGTGGATTGTGTCATGTAATTTAATTGCAGCACCAATATTATATAGCCCCAGCCCTCCATCGTAGTACGCTTTTCTGAAATATCATATCCATCATCACTGTTATAAGTGGTGAACACTTCAGCAATTCATCTGTTATTAATACATTTCTTAGTTAAAAAGTATTAACTTGTTAATAGGTTAATGGAtggtaaaatataaaacatccCTTTTACcatttgtttgattgattgaccTCTCTATTGGATgctttattgttgtgttttgttttttttttaaaaaaaatcatagaaaGTTTCATACTTTCTAATACTATTTTGCTGACACTAGGAAAGCCTCAGCAAAACTAAATATCATGGTAAATATTTTTGCTATATTGCCCGCCCATGTGTAAGtccatattttccttttttgttgtaaattagaaatattaaattTCTTTGGAATTACAAGCATTACCCTGTAATAGCTGGAACGCTcagtatgcagtgtgtgtgtgtctctgagagAGCTGAGTGGGGATGCTTGTGCGTCACCTTGTGCCCCTGTGGACAACAGATGTGAGTGCGGGGGTGGAGCGCgcgtgtgtttgagagagaccGGGAAAGCAGGTCCTCCTGTCACCGTCTCCCTATTCCGAGATTGTTGAGGAGGCATGATGAAGAGGAAAGGGGAGGTCTTTCTCAAACAATCATTTATCCCCTGTACcagtctctgtttcttttttgtttgtttttttttactatcacccctatttctctctctttctccctctcattcactatctctctctctctctctctctctgtctcgttcTATGGGAAGTCTCTCAGCGTGGCTGGGGCTCCTCCACCCTCTCCACCAGGTCTCCGGGGCCCCCAGCTTGCCTTTGTATGTGCAACTGGCTGACAATCTCCATGTATATTTAATGCTAACCTGCTGTCAGTGCTAACAAACAGGCCtgcatggagagagacagattgaaAGGAGGGAGACAAAGAGGAGTAATCAAACAACAAGATGCGCTACACTGGTCTCCTCTTACACAGAGAGGACCACTgcagagaccacacacacacacacacagctagcaaGGGACATGACATAGGATATGTGTACATGGAGTGGGATGTTTAGGTTAGTGCAAATCAGGGGTTAACATGGATTCATCATGCATGCTTGATCTTTGGAGGGaagtgcgtgtgcgtgcgtgtgtgtgtgtatatatatat

Function

symbol description
si:ch211-212o1.2 Predicted to be involved in fatty acid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PEDS1-UBE2V1 (PEDS1-UBE2V1 readthrough).
tmem189 Enables plasmanylethanolamine desaturase activity. Involved in ether lipid biosynthetic process. Located in endoplasmic reticulum membrane. Orthologous to several human genes including PEDS1-UBE2V1 (PEDS1-UBE2V1 readthrough).

NR:

description
transmembrane protein 189-like

GO: NA

KEGG:

id description
K20656 TMEM189; plasmanylethanolamine desaturase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927394.2 True 2586 mRNA 0.47 6 12948587 12984639
XM_034305410.1 False 2415 mRNA 0.47 6 12952550 12984645

Neighbor

gene id symbol gene type direction distance location
psme3ip1 fam192a coding downstream 34341 12904033 ~ 12914246 (-)
bbs2 bbs2,LOC107686271 coding downstream 185948 12748014 ~ 12762639 (-)
b3gnt9 b3gnt9 coding downstream 202960 12742353 ~ 12745627 (-)
foxl1 foxl1,LOC102233982 coding downstream 224060 12721746 ~ 12724527 (-)
zfpm1 zfpm1 coding downstream 268149 12607873 ~ 12680438 (-)
znf423 znf423,si:ch211-216l23.1,LOC107738741,LOC107583782 coding upstream 3700 12988345 ~ 13137217 (-)
lonp2 lonp2,LOC107686284 coding upstream 390214 13374859 ~ 13395693 (-)
il34 NA coding upstream 413630 13398275 ~ 13404730 (-)
sf3b3 sf3b3 coding upstream 426715 13411360 ~ 13440802 (-)
LOC113534846 NA coding upstream 452256 13436901 ~ 13436975 (-)
G98607 NA non-coding downstream 110045 12838220 ~ 12838542 (-)
G98588 NA non-coding downstream 144979 12802798 ~ 12803608 (-)
G98552 NA non-coding downstream 174380 12763899 ~ 12774207 (-)
G98563 NA non-coding downstream 206363 12738949 ~ 12742224 (-)
G98555 NA non-coding downstream 219094 12728444 ~ 12729493 (-)
G98767 NA non-coding upstream 42813 13027458 ~ 13028597 (-)
G98776 NA non-coding upstream 144555 13129200 ~ 13135173 (-)
G98790 NA non-coding upstream 197698 13182343 ~ 13182550 (-)
LOC117597528 NA non-coding upstream 326750 13311395 ~ 13318008 (-)
G99118 LOC108280567 non-coding upstream 660930 13645575 ~ 13647786 (-)
akip1 LOC108264820 other downstream 524609 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 543306 12396507 ~ 12405281 (-)
admb NA other downstream 603135 12311822 ~ 12345452 (-)
sspn sspn other downstream 1070383 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 1178601 11752525 ~ 11769986 (-)
G98770 NA other upstream 61178 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 566035 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1351291 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2362521 15347166 ~ 15357563 (-)
G101178 NA other upstream 5202802 18187447 ~ 18196806 (-)

Expression


Co-expression Network