cbfb (cbfb,LOC107715210,LOC107715607)


Basic Information

Item Value
gene id cbfb
gene name cbfb,LOC107715210,LOC107715607
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15613280 ~ 15653287 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927405.2
GTATTTCGGGTGTACAGTCATGAGTCGGACTCGGAGGAGCCAGGAAGTAACTGTGAGCCATGCCGCGCCACGGATAAAGTAAAAGCAAGCGCGCGCCTCGTCGTCAGCAGCCagtgatctcacacacacacacacacgcatacacacacgcacacacacacgcacggggAGGGAGAATACTAGCCGACTACGAAATCGTGCCAAATGTATCGTAGTGACGGACAGTGAGCGCACAGCAGCTCGGGAACGCTAGAAATTCCAGTCGCAGAATAACAGGAATATTAAAGCAGCGCATCGCCACACGCTTCATCCCCTGAAGAAGAAAAGACGGAAGGAAACAAGAGCGGGATTTTAGCGGGGAGTTTCGAAGCGCCTGTTTCTCTTGCACTGTATAAGACACAAAATCGGCAAAATAGAGCACATAACGTTCAAGATGCCTCGGGTGGTCCCGGATCAGAGGAGCAAGTTTGAGAACGAGGAGTTCTTCAGGAAGCTGAGCCGCGAGTGCGAGATTAAATACACCGGTTTCCGAGACCGACCCCACGAGGAGAGACAAGCCCGCTTTCAGAACGCCTGCCGGGACGGCCGCTCAGAAATAGCTTTTGTGGCGACCGGCACCAATCTCTCGCTGCAGTTCTTCCCCGCCAACCTGCATGGTGAGCAAAGGCAGATGCCCAGCCGAGAGTATGTGGACTTCGAGAGAGAGACGGGAAAGgtgtACCTGAAGGCCCCTATGATCttaaatggagtgtgtgtgatttggagAGGCTGGATTGACCTGCAACGTCTGGATGGAATGGGCTGTTTGGAATATGATGATGAACGAGCACAGcatgaGGATGCTCTTGCCCAGGCTGCCTTTGAGGAGGCTCGCAGGAGGACTCGTGATTTTGAGGACAGGGATCGTTCACACCGCGAGGACCTGgagccCAGGCGACAGCAGGACCCCAGCCCTGGCTCCAACATGGGCAACACTGACGATCACAAGATGCGCTAACGGCAATCAGCAATCCAGTGGGCAGGGAAAGGGTGACACCATCTCCATCACCACAACAATTTCACAACTCCATCGCCCCAAATAATCACACAAGAGACCAAAGTCCACATGTCGGGGTGGGGTGG
>XM_026927406.2
TATTTCGGGTGTACAGTCATGAGTCGGACTCGGAGGAGCCAGGAAGTAACTGTGAGCCATGCCGCGCCACGGATAAAGTAAAAGCAAGCGCGCGCCTCGTCGTCAGCAGCCagtgatctcacacacacacacacacgcatacacacacgcacacacacacgcacggggAGGGAGAATACTAGCCGACTACGAAATCGTGCCAAATGTATCGTAGTGACGGACAGTGAGCGCACAGCAGCTCGGGAACGCTAGAAATTCCAGTCGCAGAATAACAGGAATATTAAAGCAGCGCATCGCCACACGCTTCATCCCCTGAAGAAGAAAAGACGGAAGGAAACAAGAGCGGGATTTTAGCGGGGAGTTTCGAAGCGCCTGTTTCTCTTGCACTGTATAAGACACAAAATCGGCAAAATAGAGCACATAACGTTCAAGATGCCTCGGGTGGTCCCGGATCAGAGGAGCAAGTTTGAGAACGAGGAGTTCTTCAGGAAGCTGAGCCGCGAGTGCGAGATTAAATACACCGGTTTCCGAGACCGACCCCACGAGGAGAGACAAGCCCGCTTTCAGAACGCCTGCCGGGACGGCCGCTCAGAAATAGCTTTTGTGGCGACCGGCACCAATCTCTCGCTGCAGTTCTTCCCCGCCAACCTGCATGGTGAGCAAAGGCAGATGCCCAGCCGAGAGTATGTGGACTTCGAGAGAGAGACGGGAAAGgtgtACCTGAAGGCCCCTATGATCttaaatggagtgtgtgtgatttggagAGGCTGGATTGACCTGCAACGTCTGGATGGAATGGGCTGTTTGGAATATGATGATGAACGAGCACAGcatgaGGATGCTCTTGCCCAGGCTGCCTTTGAGGAGGCTCGCAGGAGGACTCGTGATTTTGAGGACAGGGATCGTTCACACCGCGAGGACCTGgagGACCCTGTGGCATCAAAAATCTGGGACTGATGGCATTCACGGACCAGGccCAGGCGACAGCAGGACCCCAGCCCTGGCTCCAACATGGGCAACACTGACGATCACAAGATGCGCTAACGGCAATCAGCAATCCAGTGGGCAGGGAAAGGGTGACACCATCTCCATCACCACAACAATTTCACAACTCCATCGCCCCAAATAATCACACAAGAGACCAAAGTCCAC

Function

symbol description
cbfb Enables protein heterodimerization activity. Contributes to DNA binding activity and transcription coregulator activity. Acts upstream of or within several processes, including heart contraction; lymphoid lineage cell migration into thymus; and myofibril assembly. Located in Z disc and nucleus. Part of core-binding activity factor complex. Is expressed in several structures, including digestive system; ganglia; hematopoietic system; immune system; and pericardial region. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CBFB (core-binding factor subunit beta).

NR:

description
PREDICTED: core-binding factor subunit beta isoform X1

GO:

id name namespace
GO:0048769 sarcomerogenesis biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045214 sarcomere organization biological_process
GO:0060047 heart contraction biological_process
GO:0016513 core-binding factor complex cellular_component
GO:0030018 Z disc cellular_component
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927405.2 False 1122 mRNA 0.54 6 15613280 15653287
XM_026927406.2 True 1152 mRNA 0.54 7 15613281 15653270

Neighbor

gene id symbol gene type direction distance location
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding upstream 11376 15522791 ~ 15601904 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding upstream 131143 15477466 ~ 15482137 (+)
bcar1 bcar1 coding upstream 145504 15395103 ~ 15467776 (+)
cfdp1 cfdp1,LOC105419833 coding upstream 224333 15358403 ~ 15388947 (+)
ctcf ctcf,LOC107583725 coding upstream 313701 15291924 ~ 15299579 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding downstream 7705 15660992 ~ 15672334 (+)
mef2aa mef2a coding downstream 70136 15723423 ~ 15809116 (+)
mctp2a LOC108264697 coding downstream 159227 15812514 ~ 15856112 (+)
LOC113534692 NA coding downstream 606158 16259445 ~ 16260173 (+)
LOC113534621 NA coding downstream 847473 16500760 ~ 16510979 (+)
LOC117597598 NA non-coding upstream 4177 15607970 ~ 15609103 (+)
G99893 NA non-coding upstream 90556 15522020 ~ 15522724 (+)
G99854 NA non-coding upstream 145064 15467938 ~ 15468216 (+)
G99879 NA non-coding upstream 158241 15450819 ~ 15455039 (+)
G99819 NA non-coding upstream 389426 15223649 ~ 15223854 (+)
G100079 NA non-coding downstream 18042 15671329 ~ 15734348 (+)
G100097 NA non-coding downstream 205972 15859259 ~ 15859474 (+)
G100102 NA non-coding downstream 210004 15863291 ~ 15863493 (+)
G100103 NA non-coding downstream 210403 15863690 ~ 15863915 (+)
G100160 NA non-coding downstream 215260 15868547 ~ 15868764 (+)
carmil2 carmil2,rltpr other upstream 267134 15300482 ~ 15346146 (+)
G99341 synm other upstream 1088800 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1570828 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1656929 13932539 ~ 13956351 (+)
G98972 NA other upstream 1823890 13785095 ~ 13789390 (+)
G100306 NA other downstream 696170 16349457 ~ 16349787 (+)
G100345 NA other downstream 946970 16600257 ~ 16601067 (+)
rgma NA other downstream 1004314 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1747139 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 1836259 17489546 ~ 17493092 (+)

Expression


Co-expression Network