nudt21 (nudt21,LOC107660760,LOC107690386)


Basic Information

Item Value
gene id nudt21
gene name nudt21,LOC107660760,LOC107690386
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15477466 ~ 15482137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927428.2
CACGCCGGAAATGGTTTTACGGCAAAGTGCGGTGTTTTCGTTTTTGCGTCTAATACAAACTACTTCGTTGAGTAGCCCTAGTCggtttgttcattttaatagtaataaaacaGCTGGTGCACGATAACGTAGATTCTTTTTAAGTAAATACTTTAATTATCTAAGAAAGCATGTCAGTTGTTCCTCCGAACCGCTCGTCTACCGGCTGGCCGCGAGGAGTTAATCAGTTCGGAAACAAATACATTAGCCCACCGGCTAAACCTCTAACCCTGGAGAGGACCATCAACCTATATCCTCTGACCAATTACACGTTTGGCACAAAAGAGCCGCTGTATGAAAAGGACAGTTCGGTGGCCGCCAGGTTCCAGCGCATGCGCGAAGAGTTTGAGAAGATCGGGATGAGGCGCACGGTGGAGGGAGTGCTGATTGTACACGAGCACAGACTGCCTCATGTcctgctgctgcagctgggaACCACCTTCTTCAAACTCCCTGGTGGAGAGTTAAACCCAGGAGAGGATGAGGTAGAGGGCTTAAAGCGGCTGATGACGGAGATCTTGGGGCGTCAGGATGGTGTGAAGCAGGACTGGGTGATTGATGACTGCATTGGAAACTGGTGGAGACCCAATTTTGAACCACCACAGTACCCCTACATTCCAGCACACATCACTAAGCCCAAGGAACATAAGAAGCTTTTCTTGGTCCAGTTACAAGAGAAAGCATTGTTTGCTGTGCCGAAAAACTACAAGTTGGTGGCAGCCCCCTTGTTCGAGCTCTACGACAACGCTCCTGGATACGGGCCCATTATATCCAGCCTCCCTCAGTTACTCAGCAGGTTTAACTTCATCTACAACTGAGGGGTGCACACAGCTCGTAAGGCTGTCTCTGTGAGTGCAGTCAGAacctgagagaaaataaatggacTGGAGAAGGTGGCTACTTTCTCTGACCTGTAACCAGAGGAGAATTGGCTTACAGTCCAATGCTGTTTTGAAATTTCATGTAATTttcatgtgtatgtttttttgtccatttaggTTTTGTCTTCTTCACAACTGCATtgtaattttagattttagtgttaaattacttattcatttaccTAAATAGCTACTTTTTATGTTCAGTAAGGAGTGCATACAACGACTTTAgtcaataaaatgtgattcagga

Function

symbol description
nudt21 Predicted to enable identical protein binding activity and mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in several processes, including positive regulation of cell differentiation; protein-containing complex assembly; and regulation of mRNA metabolic process. Predicted to act upstream of or within cell differentiation and mRNA polyadenylation. Predicted to be located in cytoplasm and paraspeckles. Predicted to be part of mRNA cleavage factor complex. Orthologous to human NUDT21 (nudix hydrolase 21).

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 5

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0016567 protein ubiquitination biological_process
GO:0042382 paraspeckles cellular_component
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0017091 AU-rich element binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K14397 NUDT21, CPSF5, CFIM25; cleavage and polyadenylation specificity factor subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927428.2 True 1173 mRNA 0.45 7 15477466 15482137

Neighbor

gene id symbol gene type direction distance location
bcar1 bcar1 coding upstream 9690 15395103 ~ 15467776 (+)
cfdp1 cfdp1,LOC105419833 coding upstream 88519 15358403 ~ 15388947 (+)
ctcf ctcf,LOC107583725 coding upstream 177887 15291924 ~ 15299579 (+)
ripor1 fam65a coding upstream 186016 15215050 ~ 15291450 (+)
ranbp10 ranbp10,LOC107583731 coding upstream 306547 15131265 ~ 15170919 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding downstream 40654 15522791 ~ 15601904 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding downstream 131143 15613280 ~ 15653287 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding downstream 178855 15660992 ~ 15672334 (+)
mef2aa mef2a coding downstream 241286 15723423 ~ 15809116 (+)
mctp2a LOC108264697 coding downstream 330377 15812514 ~ 15856112 (+)
G99854 NA non-coding upstream 9250 15467938 ~ 15468216 (+)
G99879 NA non-coding upstream 22427 15450819 ~ 15455039 (+)
G99819 NA non-coding upstream 253612 15223649 ~ 15223854 (+)
G99813 NA non-coding upstream 261750 15215391 ~ 15215716 (+)
G99786 NA non-coding upstream 296695 15176236 ~ 15180771 (+)
G99893 NA non-coding downstream 39883 15522020 ~ 15522724 (+)
LOC117597598 NA non-coding downstream 125833 15607970 ~ 15609103 (+)
G100079 NA non-coding downstream 189192 15671329 ~ 15734348 (+)
G100097 NA non-coding downstream 377122 15859259 ~ 15859474 (+)
G100102 NA non-coding downstream 381154 15863291 ~ 15863493 (+)
carmil2 carmil2,rltpr other upstream 131320 15300482 ~ 15346146 (+)
G99341 synm other upstream 952986 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1435014 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1521115 13932539 ~ 13956351 (+)
G98972 NA other upstream 1688076 13785095 ~ 13789390 (+)
G100306 NA other downstream 867320 16349457 ~ 16349787 (+)
G100345 NA other downstream 1118120 16600257 ~ 16601067 (+)
rgma NA other downstream 1175464 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1918289 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 2007409 17489546 ~ 17493092 (+)

Expression


Co-expression Network