got2a (got2,LOC107694944,LOC107596935,LOC107738675,LOC107726360)


Basic Information

Item Value
gene id got2a
gene name got2,LOC107694944,LOC107596935,LOC107738675,LOC107726360
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14735413 ~ 14742680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927444.2
TGGCGGCGCTGTTCGCTCTCTGCGCGCTTCATTAGAAAGCGGTGCTGCTgctgtgactctctctctctctctctctcactcactctctcagtgtAGCTGCTGCAGTGTGAGCGTGTCCTCCTCTAGCTTTAATCCCGCACGGTTGCAGCAATGGCCCTGCTGAAATCAAGCAAGGTTCTTTCAGCTGTTGGGGCGTATAGCCCAGCTCTGGGAGTCTTCCCTCTCCGCGCAAGCTCATGGTGGACTGAGGTACAGATGGGCCCACCTGACCCCATCCTTGGGGTGACTGAGGCTTTCAGGCGTGATACCAACCCCAAGAAGATGAACCTTGGAGTGGGGGCTTATCGAGACGACCAGGGAAAACCCTACGTTCTTAACTGCGTCCGCAAGGCTGAGGCTCAGATTGCTGCTAAGAAGCTGGACAAAGAGTACCTCCCCATCGGAGGCCTGGCAGATTTCACCAAGGCCTGTGCTCAGTTGGCTCTAGGACCTGAAAGTGAAGTCCTGAAGAGTGGCAGAAGCGTCACTGTCCAGACCATTTCAGGAACCGGATCTCTGCGTGTTGGAGCCAATTTCCTGTCGCGGTTCCACACTGCAGTGCGTGATGTGTACCTGCCGAAGCCTTCATGGGGCAACCACACACCCATCTTCAGGGATGGAGGCCTGCAGCTGAAGGCTTACACCTACTACGACCCAAAGACTTGTGGCTTTGACTTCAAGGGAGCCATTAATGACATCTCAAAAATCCCAGAGAAGAGTGTGATTGTCCTGCATGCATGTGCTCACAACCCCACTGGAGTAGACCCAAGACCAGAGCAGTGGAAAGAGATGGCTGATGTGATCAAGAAAAGAAATCTGTTGGTGTTCTTCGACATGGCCTACCAGGGCTTTGCCAGTGGGGACATTGACCGGGATGCTTGGGCTGTGCGCCACTTCATTGAACAAGGCCACAATGTTGTTCTCTCACAATCCTTTGCTAAGAACATGGGCCTGTATGGTGAGCGTGTAGGAGGTTTTACAGTTGTGTGTAAGGATGCTGAGGAGGCCAAACGAGTGGAGTCCCAGCTGAAGATCCTCATCCGTCCTATGTACTCTAACCCCCCCATGAATGGGGCTCGCATTGCTGCAGCCATCCTTAACAcacctgaactctacagtgagTGgTTGGTTGAAGTGAAAAGCATGGCAGACCGCATAATTAATATGAGGGAGATGCTTGTCTCGAATCTTAAAAAGGAGGGCTCCACTCACAACTGGCAGCACGTCACTGACCAGATCGGCATGTTCTGCTTCACCGGCCTCAAGTCTGAGCAGGTGGAGCGTCTAATTAACGAGTACTCTATCTACATGACAAAGGATGGACGTATCTCCATGGCAGGTGTGACCTCCGGAAACGTGGCCTACCTTGCACATGCCATCCATGCCGTTACCAAGTGAATCTAATGCATTGTAGATGTGGTGTACTGTAGTGACATTCGACTTGCACAAAAAATGTCTCCCTTCATATAACTTGGGCTTTATCTCGGGAGGGTGTTAAGTAGGACTACCCTGTTTATTGTCAGCTCATCTTGATTGGCATTCTTACTGTTTACCTgtgaaatatagaaaataaagatTGAAAGCACTGCACTTGAATTTCCCTATGAGTTATATCTAAAGTCTGTCACTTTGAGTGATAGAGATTAAACTATACTGATATTACAGAGTTCCCAAAGAACACAATTAAGTGGCTACTTAGTGGCTCTAATTTTACtgtagttatttttttcctctattgAAGTCAGTAATCTGAACATTTGTAAATAGAATATTCTGAATCCAAAGcacttaagaaaaaaatgtattcaaacaAATGCAATAATTTGAGGTCTGCCCATTTACGGTAAAGCtaatttgtgttatttaatttgcaAACTGTTACACATCTTCTTGTCTGCTGATTGGGTCCATGATCTTTGTCCCAATAAAGTTCATGGGCATTTAATTATACAAGAAGCAAAAGCACTTTTTAGAGGAGTCTGTGAGTTCAGGGGCAGGGAATAACAGACTAGCTGCAGGATGTGTATTGGATATGATCCACTGCGTGTAATTTGCCGTAATATTAAAGCACTTATTCTAACCTGATAAATGTAGTTTGTACGTAAGTCAGACTGATATGGctaaataatcaacaatttgCCACACCAGAATAAAATTCCTATTATTTCTTTTGCACATCTGATTTAATCATTGGTGGGTGTAAATGTATTGTAGGTTATATggattttaatatatttgaatgCAGGATACATGATGGTTTATAAATACTCGGGTTGGTTGCTACTAGTTAAAATTTGTTCACTGGGTTGTCTTAATTGAAAATCATCAGTTATCAAAATCTCCAATTTTTCTCCAATGTGAAATGTTATATGTATAATACCTCCTATACCTATACgcagtaaacaaataaagatgAGCTTGTCAAACCTCGA

Function

symbol description
got2 Enables L-aspartate:2-oxoglutarate aminotransferase activity. Involved in aspartate catabolic process; fatty acid transport; and response to ethanol. Located in mitochondrion and plasma membrane. Implicated in developmental and epileptic encephalopathy 82.

NR:

description
aspartate aminotransferase, mitochondrial-like

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0004069 L-aspartate molecular_function

KEGG:

id description
K14455 GOT2; aspartate aminotransferase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927444.2 True 2471 mRNA 0.45 10 14735413 14742680

Neighbor

gene id symbol gene type direction distance location
si:dkey-12e7.4 LOC108264682,LOC108424351,LOC106560815,LOC107578981 coding downstream 258 14730120 ~ 14735155 (-)
syt19 LOC108263939 coding downstream 5807 14719885 ~ 14729606 (-)
si:dkey-12e7.1 si:dkey-12e7.1,LOC108264421,LOC108427511,LOC103035474,LOC107596938,LOC107583743,LOC107738678,LOC105904526 coding downstream 62051 14670313 ~ 14673362 (-)
anpepa anpep coding downstream 67682 14657970 ~ 14667731 (-)
igf1ra igf1r,igf1ra,LOC107672255,LOC107596941 coding downstream 105462 14536079 ~ 14629951 (-)
calb2a calb2,calb2a,LOC108264862,LOC107672188 coding upstream 5942 14748622 ~ 14760494 (-)
pnp6 LOC108264829,LOC108424368,LOC103033869 coding upstream 28600 14771280 ~ 14781553 (-)
slc38a8a slc38a8 coding upstream 227104 14969784 ~ 14978150 (-)
mbtps1 mbtps1,LOC107672278,LOC107694940,LOC107596929 coding upstream 246108 14988788 ~ 15015137 (-)
pskh1 pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554 coding upstream 276278 15018958 ~ 15026868 (-)
G99493 NA non-coding downstream 86420 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 131941 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 199403 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 215629 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 282306 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 406723 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 417523 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 428631 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 433495 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 554925 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 388405 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1172839 13550680 ~ 13562574 (-)
G98770 NA other downstream 1683102 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2311435 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2330132 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 604486 15347166 ~ 15357563 (-)
G101178 NA other upstream 3444767 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 5237389 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5653186 20395866 ~ 20416574 (-)
G102566 NA other upstream 6210922 20953602 ~ 20966910 (-)

Expression


Co-expression Network