ric8b (ric8b)


Basic Information

Item Value
gene id ric8b
gene name ric8b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11470088 ~ 11484458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927467.2
actctctATGACGTGACGTTTCTCAGGGAAAAGTTGAAAAGAGAGGTTTTCGGTGAGGCGGAACCAAAACATCTGCTGCTACTTGTGTAAGACTTCAGTCACTGTTCTGTTAGTTAGGGTGGTCAGTCTCCAGCCATGGATCTGAGTGGAATTCTGCTGCAGATTGAAAACGGGAACGATGAGGAAATTGAAAAGCGTTTGCAGGAATACAACGCAGAGaactgTAGGACTTTTGCCTTTGACTGCAAACAAGAGGAGGCTCGAATAAAGCTGTGTCAGGGAATACTCACAGTGCTCAGGCAGCCTGTGCGGCCCCAATGTCAGAGCACCTGTCTGGAGACCATGCGCATCCTGTCTCGTGATAAGCGTGTCCTTGGGCCTGTAGCCACCCACGACGGCATAGTCACTCTTGCCCGGCTGGCGCGCATCCCGCTGCCTGATGTCGATGTGGAGCGTCTAGAGAAAACAGAGTCAGCAGCTGAGGAGAGGGTAGTGGTGGAGGCGCTCAAGTGCCTGTGTAACGTGATGTTTAACAGCGTGGCAGCGCAGCAGGTGGGTGCAGACGTGCAGCTAGGACTGGGTTTGTGTGCCTGTCTGCGCATGGCCAGCTCCGCCAACCATGACGTGGAGCTCTTCTCTCTCCGTTTGCTCTTCCTGCTTTCGGCCCTGAGGCCAGACATCCGGAGAGGACTGCGCCAGGACTCAGATGCTGTGGAGCTGCTCACTGGTGTACTCGAGCGCACCTTGGATGTGCGCTGGGCGGGGCCGTACGAAGTCACGTGTCCTGACTCACAGGCCCCACCCATTCCTCTAGAGAGGAACGAGCGGGCAATGGAGTCACTCAAAGCTCTGTTCAACATCACCATGGCTGACTCCAATGATCAGCATAATGATCACCAACTGAGGCGTATAGCAGCCATAATGAGGCATATTCTAATGCTGAGGGTTCAGACAGAGGAGAAAACGGAGGAAGTTCACAGTCATGCCATAAATCTTCTGAGCAACCTTCCTGTGTCCTGCTTGGATGTCCTGATCGACGTGCCTGTACAGGGAGGACTTGAGGAATATGGTGGAAAGAACGTGAATGCTCTGCAGGTGCTTCTGGACTTCATGGAGAAAAGAATAGACAAGGGGTCAAATTACAAAGAAGGCCTGACTCCAGTGCTGAGCCTAATGACGGAAAGTTCCAGATACCACAGGGAGATTCGCAGATACCTCAAAGCTAAGGTTTTGCCACCTCTAAAAGATGTGAAAGTGAGACCAGAAGTGGGCAGCACCGTGCGCAACAAACTGGTCCGCCTCATGACTCACATAGACATGGGGGTGAAACAGGGGGCTGCGGAGTTCCTTTTTGTCCTCTGCAAGGAAAGCGTGGACAACCTGTTGAAGTATACTGGCTATGGCAATGCTGCAGGGCTGCTGGTGGCTCGGGGGCTGCTGGCAGGGGGCAGAGGAGACACTGAGTACTCTCCTGATGAGGATTCAGACACCGAAGAGTACAAATCAGCAAAACCATTCATTAACCCCATTACAGGCCACATAGAGGAGCCAATGCCAAACCCTATTGAGGACATGACAGAGGAACAGAAGGAATACGAAGCTCAGAAACTTGCAAACATGATCGGCGAGTTGTCAAGGCAGCAACTGATCAGGCCAATGGGAGTGAGGAAGGATGGCTCACTAGCTCCCCTAGAGGAGGCGCTACACACATGCAAGATTCCAGACAGCAGTGACTCAGACTCGGATTAAGACACGCCAAcgttactcactcactcacttgctGAATTGCCACGAAGTCAGCGCTCcatatgaaaagaaatgatATAAAACTTGTCattagtttttgtgtttgtattagaAACAATATAGTTTGTGCCTCTTTGATTTGTGAGACATGATGTGTTATATGTCAGTGCAAATTCATGACCAAGAGTGAGTCACAGTGAGGTGGTCAGATGTTGAGGTTTAATGCTCTGTGACGTTACTCTCGACCATAAATTTACAATGGACAATTAGCCATTTTATCTCAGAAACCAAATGAAACATTTGATTGCATTTCTTTTCAGTGTTGTGCCGCATTCTTGAGTTCCTCACTGATGCTCAGGGCAAGGCTAGGGAAAGAATCTGATGAAATCCACATCAGTCTCGGACCATAACGATCCCACTGTCCCACTCAGAAGCAGaaagaacattttttgttttttctgggaGATCAGTTTGGAATTTTACTTAAACTTGCTACTTTGGTAATCATTCCTTACCTTACTCTAGGTACACTGAACTGTTAACAGGCATTTACACCTAACAGGGATGGAGAAACTGTAGGACATTAGACTGTTAATATTATCTTGTAAGTGTAAATAGCACAGTTAGCATGGGCTGCTCTTGCCACTCTGGCGTAGGTCTTTATAGAAGGAGGGAGAGCAGTAACATATATCACTAAGCATATTGTAGTTATATATAAAAGACTAAAGGTAATCGTGGGGAATCACTGAATGTCTCTTATCACTAGTGTGGCTTTAAAGACAGGTACATACACACCAGGCTAGTCTTTATAATTTTAGTGTGACTTCACTGCTTCAATATTACATTTGGACAAtcttattaataattttttttgtataagatttttttttttgaagatttaAATGAATACTCGGTCCATGCGAATATTGTTTAATAGATTAGTATTATTAACTAAagtgaatttgttaataatgctAAAGAGAATGCTGGAATCACATGGAAGtaggaaaaacttttttttttaaatccataacTTGAAGTAGTggtaaaagtgtgtaaaaaaaacaaacaaaaaaaagattaactgtcactatgtacagtataatgtcTATAACACTGCTGCATAAATCTGATCTGTAGAGACATTCACTGATGTTTGAACATTtagcttttcatttctttttgaacAAAAGCCTTATTTCTCTTGAGTGGGCATCCATGAGCCTCTTTCCtttgtgctgaaaaacagaaatctgtaaaaagctgttaaaaaaaagtgtatttacATTTCTCTGGCCTTACAGTGAAATCTGTTTGTATTAAAGTCCCTCGTTCAGCTCCTGGAACATCACATTTCCAACTAAATTTAGATTTTAGGATTTTCTGGTATCTGTTTTTCTGGTAAAATTtatttcaagattttttttagattaataatAGCTCAAAATGGTTcacatttatcaaaaaaaaaaatatttagcgaaatgaagtcattttcattttagaCGGTTCACTGAATATTTATGTTTACGCATCCACTTCTTCTTAGAATTCTCAGAACACGGACTTTCTGTAAGTTTGCTTATTATTCTGTAAACTGGGGAATCATGGCTTTCTAgttgtgttataaagtgctgGGAACATAAATGCTAGAACTACAGATTCAAGTGACTCATATTTTAAAAGCTGGTTTGCCTTAGGAATcatcactgttttatttatttattataaaacagcCTGTATGGTGATAAATGTAAAGTGCATGTAAATTAAGCAAAACATTACCTATGGTTTAAGAATTGTTTCCACATTTTAATACTTTTGTTTCCTCACCATCATTAATAATTTTGCAGGCCATCTGATGGTATGTCCCCACATTCAGTCACAACATATTCCTGACACTTTTCTGGAATTCTAAGAACAGATTAGTATTTTGAATATTTGTGCGCTTTTGTAAAAATTTCCTTAGCACCTGTATGATAAATATACACAATGTGTGTAATCTATCATTTTTTATACTGTACTAAACACTGTTTAAATGAG

Function

symbol description
ric8b Predicted to enable G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Acts upstream of or within pigment cell development. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RIC8B (RIC8 guanine nucleotide exchange factor B).

NR:

description
PREDICTED: synembryn-B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927467.2 True 3789 mRNA 0.42 10 11470088 11484458

Neighbor

gene id symbol gene type direction distance location
tmem263 tmem263,LOC107664679,LOC107583827,LOC107740170 coding downstream 16210 11449484 ~ 11453878 (-)
mterf2 mterf2 coding downstream 61768 11406563 ~ 11408320 (-)
btbd11b btbd11,btbd11b,LOC107553977,LOC107664686,LOC107730921,LOC107672238,LOC107583829 coding downstream 87497 11320829 ~ 11382591 (-)
mlc1 mlc1 coding downstream 151896 11308950 ~ 11318192 (-)
panx2 panx2,LOC107583834,LOC107730920 coding downstream 163047 11293326 ~ 11307041 (-)
rfx4 rfx4 coding upstream 5184 11489642 ~ 11506690 (-)
polr3b polr3b,LOC107664690 coding upstream 24317 11508775 ~ 11535664 (-)
endouc LOC108264851,LOC108425714 coding upstream 52784 11537242 ~ 11542381 (-)
ppfibp1b ppfibp1 coding upstream 59202 11543660 ~ 11576988 (-)
si:ch211-245j22.3 si:ch211-245j22.3,LOC108264234,LOC105895582,LOC104937698,LOC107749310,LOC108425778 coding upstream 93787 11578245 ~ 11581884 (-)
G97607 NA non-coding downstream 279248 11190641 ~ 11190840 (-)
G97601 NA non-coding downstream 282065 11187495 ~ 11188023 (-)
G97246 mlycd non-coding downstream 809036 10657192 ~ 10661052 (-)
G97225 NA non-coding downstream 949091 10520795 ~ 10520997 (-)
G97224 NA non-coding downstream 950783 10519097 ~ 10519305 (-)
G97932 NA non-coding upstream 196271 11680729 ~ 11696665 (-)
G97931 NA non-coding upstream 206539 11690997 ~ 11693079 (-)
G98342 NA non-coding upstream 789817 12274275 ~ 12275411 (-)
G98343 NA non-coding upstream 791264 12275722 ~ 12276229 (-)
G98383 NA non-coding upstream 993445 12477903 ~ 12478277 (-)
pdf pdf,spata2l other downstream 290480 11172687 ~ 11179608 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 888186 10527110 ~ 10581902 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 1175265 10266978 ~ 10294823 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other downstream 1551607 9822233 ~ 9918481 (-)
LOC113534661 NA other downstream 1698068 9750882 ~ 9772020 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 101599 11586057 ~ 11610964 (-)
plekhg7 plekhg7,LOC107583891 other upstream 268067 11752525 ~ 11769986 (-)
sspn sspn other upstream 386450 11870908 ~ 11878204 (-)
admb NA other upstream 827364 12311822 ~ 12345452 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 912049 12396507 ~ 12405281 (-)

Expression


Co-expression Network