paqr5a (paqr5,LOC108263988)


Basic Information

Item Value
gene id paqr5a
gene name paqr5,LOC108263988
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14266084 ~ 14276651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927471.2
GAGCCACAGCTGACAACGAAAACAAAGAAAGGTATGTTTTCCCTCTAAAGCTGCTGGCTGTGTCACTGTCAGGGAGAAAGATGGAAGAAATTCCCGTCATTTAGCACTGCACAGGTCCACGGGCAGCACTTTTCCACAGCTTTACATCGTTTATATGCTCAGAGGAGTAAGTACACTGGGTGATCCAGGAAAAGGGTGGAGCAACTAAAGAGAACATTACAAGCACAGTTCATGCCAGATTCTCTCACCTTTCAATGTTGACTGCTAGTGGATTATAGGATCATGTTGAGCCTTATCAAACTACCTCGAGTCTTAACCATCAACCAAGTTCCAAAAGTGTTCCATGAGGATGGGATCATATCTGGGTATCGATATCCATACAGCTCCGCTAAAGACTGTGTTCTAAGTATCTTCCAGCTAACTAATGAAACCCTCAACATTTGGACCCACTTTCTTCCTACATGGTTCTTCTTGTGGAAGCTCCTTGTGGTGCTAATAGAGGAAGACTGGCAGGACTCCTACTGTTGGCCTCTGCTGGTCTTCCTGTTGTCCAGCTGCTTGTACCCACTGGCTTCCAGCTGTGCACACACCTTCAGTACCATGTCTGAACGTGCCAGACACATCTGCTTCTTCTTCGACTATGGAGCACTCAGCTTCTACAGCTTAGGTTCTGCCATCGCATACTCCTCCTATATATTTCCTGAGAAATGGGTGAACAGtgttttccataaatattacattccCACTGCCATGCTCAACTCTATCCTCTCCACTGGACTGGCCTGCTACTCAAGGCTTGGATTACCTTTCATTGAGTACAACTACCGTTTAAATAAAAGgtcTGTTGAGAAAACAAGTGTGAAACTAGAGAAAATTCTGCGCATTGTGTCCTTTGCACTTCCGTATCTCTTTGACAACATCCCTTTGTTCTATAGGatttttgtgtgtgttggagaggaTTGCACACTCAATGAAGCCATTACTGTTCACTACCAGCACACTGCACTGGCACTACTTACAGGATTCCTCTTTGCCTCACACCTACCTGAACGCCTGGCACCTGGAAGTTTTGACTATATAGgACACAGTCACCAGCTCTTTCATGTGTTCGCAATCACTGGCACGTACTTCCAGCTCGCTGCAGTTGAGCTAGACATGACCTTACGGAAGCAATGGCTTCTGACTCATTCACAACCCATTACCTTCACCAACACAGTAGGTGCAGCATTGCTTTGTGCAGCCTTCAGTCTATGTATAATCTATGTCTTCAGTAAGGCACTTTTCTGCACAAGGATTTGGAAGGACAATGATTTGAAAAGGTCACATTTTGCTGCAGTTTCTGACTCACAGCATgcaaaagtgtgttttattttaagacaGGAAAAATTAAggtgaaggattttttttcatggacTGAAGCATGTTCTATACAAGACTGATATCTGTGTTAATTATTCAAGATCTCCTGTTAGAGATCTGTTAATTAgattttgttataaaataagtTGAAAACTGAAATGAGGATTCATGCTGTGCCTTTCACTGGGTTGTGTTTACAATTATGACACTCAGtatgtgatttattattattttttgcttcAATTTCAAGACCTGGATTCCCCACATGTACActgaaaatttttttatttctgtgaagtTTTGTT
>XM_034305434.1
GAGCCACAGCTGACAACGAAAACAAAGAAAGGTATGTTTTCCCTCTAAAGCTGCTGGCTGTGTCACTGTCAGGGAGAAAGATGGAAGAAATTCCCGTCATTTAGCACTGCACAGGTCCACGGGCAGCACTTTTCCACAGCTTTACATCTAAACCTTCCACAAAGCTACCATGCACAGGCTCTGATACTGTGCTGAAGCAGCCGCCCACTTTCCCCTGgGTTTATATGCTCAGAGGAGTAAGTACACTGGGTGATCCAGGAAAAGGGTGGAGCAACTAAAGAGAACATTACAAGCACAGTTCATGCCAGATTCTCTCACCTTTCAATGTTGACTGCTAGTGGATTATAGGATCATGTTGAGCCTTATCAAACTACCTCGAGTCTTAACCATCAACCAAGTTCCAAAAGTGTTCCATGAGGATGGGATCATATCTGGGTATCGATATCCATACAGCTCCGCTAAAGACTGTGTTCTAAGTATCTTCCAGCTAACTAATGAAACCCTCAACATTTGGACCCACTTTCTTCCTACATGGTTCTTCTTGTGGAAGCTCCTTGTGGTGCTAATAGAGGAAGACTGGCAGGACTCCTACTGTTGGCCTCTGCTGGTCTTCCTGTTGTCCAGCTGCTTGTACCCACTGGCTTCCAGCTGTGCACACACCTTCAGTACCATGTCTGAACGTGCCAGACACATCTGCTTCTTCTTCGACTATGGAGCACTCAGCTTCTACAGCTTAGGTTCTGCCATCGCATACTCCTCCTATATATTTCCTGAGAAATGGGTGAACAGtgttttccataaatattacattccCACTGCCATGCTCAACTCTATCCTCTCCACTGGACTGGCCTGCTACTCAAGGCTTGGATTACCTTTCATTGAGTACAACTACCGTTTAAATAAAAGgtcTGTTGAGAAAACAAGTGTGAAACTAGAGAAAATTCTGCGCATTGTGTCCTTTGCACTTCCGTATCTCTTTGACAACATCCCTTTGTTCTATAGGatttttgtgtgtgttggagaggaTTGCACACTCAATGAAGCCATTACTGTTCACTACCAGCACACTGCACTGGCACTACTTACAGGATTCCTCTTTGCCTCACACCTACCTGAACGCCTGGCACCTGGAAGTTTTGACTATATAGgACACAGTCACCAGCTCTTTCATGTGTTCGCAATCACTGGCACGTACTTCCAGCTCGCTGCAGTTGAGCTAGACATGACCTTACGGAAGCAATGGCTTCTGACTCATTCACAACCCATTACCTTCACCAACACAGTAGGTGCAGCATTGCTTTGTGCAGCCTTCAGTCTATGTATAATCTATGTCTTCAGTAAGGCACTTTTCTGCACAAGGATTTGGAAGGACAATGATTTGAAAAGGTCACATTTTGCTGCAGTTTCTGACTCACAGCATgcaaaagtgtgttttattttaagacaGGAAAAATTAAggtgaaggattttttttcatggacTGAAGCATGTTCTATACAAGACTGATATCTGTGTTAATTATTCAAGATCTCCTGTTAGAGATCTGTTAATTAgattttgttataaaataagtTGAAAACTGAAATGAGGATTCATGCTGTGCCTTTCACTGGGTTGTGTTTACAATTATGACACTCAGtatgtgatttattattattttttgcttcAATTTCAAGACCTGGATTCCCCACATGTACActgaaaatttttttatttctgtgaagtTTTGTT
>XM_034305435.1
CAGTTTGGCTATgttgtgtgaatgagtgtgtgaaggagtgaatggtgccctgcgatggattggtGTCCCATGTAGGATGCATTCTCCAGCCTTGCGCCCAGTGTTTTTAGGATTGGCTCCGGATTcaactgcaaccctgaccagagcaaagcagttactgaagatgaatgaatgaatgaaaagatacATCAGTAACTTAACTGTATGGCCCTGGTTTATATGCTCAGAGGAGTAAGTACACTGGGTGATCCAGGAAAAGGGTGGAGCAACTAAAGAGAACATTACAAGCACAGTTCATGCCAGATTCTCTCACCTTTCAATGTTGACTGCTAGTGGATTATAGGATCATGTTGAGCCTTATCAAACTACCTCGAGTCTTAACCATCAACCAAGTTCCAAAAGTGTTCCATGAGGATGGGATCATATCTGGGTATCGATATCCATACAGCTCCGCTAAAGACTGTGTTCTAAGTATCTTCCAGCTAACTAATGAAACCCTCAACATTTGGACCCACTTTCTTCCTACATGGTTCTTCTTGTGGAAGCTCCTTGTGGTGCTAATAGAGGAAGACTGGCAGGACTCCTACTGTTGGCCTCTGCTGGTCTTCCTGTTGTCCAGCTGCTTGTACCCACTGGCTTCCAGCTGTGCACACACCTTCAGTACCATGTCTGAACGTGCCAGACACATCTGCTTCTTCTTCGACTATGGAGCACTCAGCTTCTACAGCTTAGGTTCTGCCATCGCATACTCCTCCTATATATTTCCTGAGAAATGGGTGAACAGtgttttccataaatattacattccCACTGCCATGCTCAACTCTATCCTCTCCACTGGACTGGCCTGCTACTCAAGGCTTGGATTACCTTTCATTGAGTACAACTACCGTTTAAATAAAAGgtcTGTTGAGAAAACAAGTGTGAAACTAGAGAAAATTCTGCGCATTGTGTCCTTTGCACTTCCGTATCTCTTTGACAACATCCCTTTGTTCTATAGGatttttgtgtgtgttggagaggaTTGCACACTCAATGAAGCCATTACTGTTCACTACCAGCACACTGCACTGGCACTACTTACAGGATTCCTCTTTGCCTCACACCTACCTGAACGCCTGGCACCTGGAAGTTTTGACTATATAGgACACAGTCACCAGCTCTTTCATGTGTTCGCAATCACTGGCACGTACTTCCAGCTCGCTGCAGTTGAGCTAGACATGACCTTACGGAAGCAATGGCTTCTGACTCATTCACAACCCATTACCTTCACCAACACAGTAGGTGCAGCATTGCTTTGTGCAGCCTTCAGTCTATGTATAATCTATGTCTTCAGTAAGGCACTTTTCTGCACAAGGATTTGGAAGGACAATGATTTGAAAAGGTCACATTTTGCTGCAGTTTCTGACTCACAGCATgcaaaagtgtgttttattttaagacaGGAAAAATTAAggtgaaggattttttttcatggacTGAAGCATGTTCTATACAAGACTGATATCTGTGTTAATTATTCAAGATCTCCTGTTAGAGATCTGTTAATTAgattttgttataaaataagtTGAAAACTGAAATGAGGATTCATGCTGTGCCTTTCACTGGGTTGTGTTTACAATTATGACACTCAGtatgtgatttattattattttttgcttcAATTTCAAGACCTGGATTCCCCACATGTACActgaaaatttttttatttctgtgaagtTTTGTT

Function

symbol description
paqr5 Predicted to enable signaling receptor activity. Predicted to be involved in oogenesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: membrane progestin receptor gamma-A-like

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005496 steroid binding molecular_function

KEGG:

id description
K25041 PAQR5, MPRG; membrane progestin receptor gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927471.2 False 1664 mRNA 0.42 9 14266084 14276651
XM_034305434.1 True 1734 mRNA 0.43 10 14266084 14276651
XM_034305435.1 False 1729 mRNA 0.42 9 14266084 14272578

Neighbor

gene id symbol gene type direction distance location
kif23 kif23,LOC107672274,LOC107686310 coding downstream 821 14256547 ~ 14265263 (-)
aagab aagab coding downstream 304698 13956433 ~ 13961386 (-)
snapc5 snapc5,LOC107672220,LOC107596973,LOC107686356,LOC107583772 coding downstream 456091 13806984 ~ 13809993 (-)
lctlb lctl coding downstream 460910 13797624 ~ 13805174 (-)
LOC113534839 NA coding downstream 477237 13788751 ~ 13788847 (-)
LOC113534338 NA coding upstream 12374 14289025 ~ 14294440 (-)
ighmbp2 ighmbp2 coding upstream 39184 14315835 ~ 14324438 (-)
bcl2l13 bcl2l13 coding upstream 90156 14366807 ~ 14384784 (-)
wnt2 wnt2,LOC107708232,LOC107738769,LOC107596948,LOC107660945 coding upstream 113248 14389899 ~ 14398268 (-)
asz1 asz1 coding upstream 125217 14401868 ~ 14422777 (-)
G99202 NA non-coding downstream 230543 14035267 ~ 14035541 (-)
G99187 smad3b,smad3,LOC108264458,LOC107738715,LOC108424035,LOC107686302,LOC107672260 non-coding downstream 315363 13950147 ~ 13950721 (-)
G99188 smad3,LOC108264458,LOC107686302,LOC108424035 non-coding downstream 319173 13944751 ~ 13946911 (-)
G99184 LOC101268919,LOC101159109 non-coding downstream 333150 13932553 ~ 13932934 (-)
G99166 NA non-coding downstream 421847 13843999 ~ 13844237 (-)
G99396 NA non-coding upstream 2792 14279443 ~ 14630745 (-)
G99408 NA non-coding upstream 52276 14328927 ~ 14334134 (-)
G99401 wee2 non-coding upstream 73067 14349718 ~ 14355619 (-)
G99433 NA non-coding upstream 172205 14448856 ~ 14453107 (-)
LOC113534271 NA non-coding upstream 234273 14510924 ~ 14519784 (-)
c6h15orf39 c4h15orf39 other downstream 703510 13550680 ~ 13562574 (-)
G98770 NA other downstream 1213773 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 1842106 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1860803 12396507 ~ 12405281 (-)
admb NA other downstream 1920632 12311822 ~ 12345452 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 59285 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1070515 15347166 ~ 15357563 (-)
G101178 NA other upstream 3910796 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 5703418 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 6119215 20395866 ~ 20416574 (-)

Expression


Co-expression Network