znf143b (znf143,znf143b,LOC107672322)


Basic Information

Item Value
gene id znf143b
gene name znf143,znf143b,LOC107672322
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12396507 ~ 12405281 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927480.2
CCTTGTCATACTACATCCCGCCCATTGACAGGCATCACGCGGTTATTCATGTTCCGGGGTTGTGGTCTCTGCAGAGCGTTTCCTGCCCTGATGCATGGCGGTCGAACGAAGGGATTGTTGGAAAATTTTTGGAGGTAGACCATGCTCTTGGCCCAGGTGAATCGGGACACCCAGAGCATGGAGTTCCAAAGTGTTGAGGGTGACCCACAGCAGGTCACCCTTTGCCTCACTGAGGCTGTGACAGTTGCAGACAGTGACCACATTGAGGCAATGGATACAGTGAGTTTGCAGGCAGTGACTCTGGTAGATGGCTCCACTGCATACATACAACACAGTCCTAAAGataacAAGATAATGGAAGGACAGGTGATCCAGTTGGAGGATGGATCTGCGGCGTATGTGCAGCACCTCCCAATGCCGAAAGCAGGTGGAGAAGGTCTAAGACTAGAGGATGGCCAAACTGTGCAACTAGAGGATGGGACAACGGCATACATTCATGCACCCAAAGaAACATATGATCAGGGTGGATTACAGGCTGTCCAGTTGGAGGATGGCACGACTGCCTACATCCAGCACATGCCCCAGTCGAGCACCATTCTGGCTATTCAGGCTGATGGCACAGTGGCAGACCTGCAAGCTGAGGGCACTATTGACCCTGACACCATCAGTGTGCTGGAACAGTATTCTGCCAAGATGGAGGGAACAGAATGTGGCACAGGGCTGCTTAGTAGAGGCGACGCTGATGGCAGTGTGCATATGCAGATTGTACTCCAGGGTCAGGAGGGCAGGTCTCCAAGAGTGCAGCATATTGGGGAAAAGGCCTTTCGCTGTGAACATGAGGGCTGTGGAAAACTCTACACAACAGCAcatcatttaaaaGTACATGAACGATCACATACTGGGGATAAACCTTACATATGCGATCATCTCGGATGTGGAAAAAAGTTTGCGACAGGATATGGCCTAAAAAGTCATGTTCGAACACACACTGGTGAAAAACCATACCGCTGCCAGGAGCTCAACTGCCTTAAGTCTTTCAAGACATCTGGAGACCTACAAAAACACACGCGAACACACACTGGGGAGAAGCCTTTCAAGTGCCCATTTGAAGGTTGTGGGAGATCTTTCACCACCTCAAATATTCGAAAGGTTCACATCCGAACACACACTGGTGAGCGGCCGTACTACTGCTCTGAACCCAACTGTGGAAGAGCTTTTGCCAGCGCCACCAACTACAAAAACCACATGAGGATCCACACAGGTGAGAAGCCATATGTGTGCACTGTGCCTGGCTGTGATAAGCGCTTTACTGAATACTCCAGTCTCTACAAACACCATGTGGTCCATACTCCCTGCAAGCCCTACAACTGCAACCACTGTGGGAAGACCTACAAGCAGATCTCCACGTTAGCCATGCACAAACGCACGGCACACAATGACACCGAGCCCAttgaggaggagcaggaggccTACTTTGAGCCACCTACAGAGGCCATTGATGACCCTGCATTAACATTTACCCCTGCTGTGgtggaggaggatggaggatCAGAGCAGGTTTCAGCAGGAACAGAGATCATGAGTCAGCAGCACGTAGCACTCATCTCTCAGGACGGCACACAGCAGGTTTTTTCTCAGGCAGACGTTCAAGCAATGAGTGGCACAATAACGATGGTAACACAAGAAGGAACAACTATAACCATCCCTGCCCATGAGGCAATGCTTTCCTCCGGAGAAGGTCATTCTGTCACCATGGTTTCTGCAGATGGCACAGAAGGACAGGTGGCAATTGTGACGCCAGATCTGTCCGTGTTCCAGACTGAGGACGGAGAGCTGGTGCATGAACAGCAGCAGCGGCCGGTGGTATCCACCAGCCCACATCCAGTTACTCTGCTGGCTACCTCTAACGGCACACACATTGCTGTGCAgcTCAGCGATCAGCCTTCGCTGGAGGAGGCCATCAGAATCGCATCACGCATTCAACAAGGAGAAACCCCAGGCCTAGATGATTAAAGCATGACCTTCAATTAAGCAAAatcaccatgtgtgtgtgccgGATGTTCGTGCATGTGCTTGCAGTGAACAACTGAGAAAGTCAAGTATCCAAAAAAATTTGATAGCATCATGATTGCTCTGTTTGAAGAGGactgaatatatttttgtgtggatttatGTACATAACAATGTTTTGAAACTGGAGTTTttgctgtaaatatttatttgattcttCTATTGAAATACTTGACTTTTTAGGatcttaataaatgaaaattgaacAACATTCCA
>XM_026927481.2
CCTTGTCATACTACATCCCGCCCATTGACAGGCATCACGCGGTTATTCATGTTCCGGGGTTGTGGTCTCTGCAGAGCGTTTCCTGCCCTGATGCATGGCGGTCGAACGAAGGGATTGTTGGAAAATTTTTGGAGGTAGACCATGCTCTTGGCCCAGGTGAATCGGGACACCCAGAGCATGGAGTTCCAAAGTGTTGAGGGTGACCCACAGCAGGTCACCCTTTGCCTCACTGAGGCTGTGACAGTTGCAGACAGTGACCACATTGAGGCAATGGATACAGTGAGTTTGCAGGCAGTGACTCTGGTAGATGGCTCCACTGCATACATACAACACAGTCCTAAAGataacAAGATAATGGAAGGACAGGTGATCCAGTTGGAGGATGGATCTGCGGCGTATGTGCAGCACCTCCCAATGCCGAAAGCAGGTGGAGAAGGTCTAAGACTAGAGGATGGCCAAACTGTGCAACTAGAGGATGGGACAACGGCATACATTCATGCACCCAAAGaAACATATGATCAGGGTGGATTACAGGCTGTCCAGTTGGAGGATGGCACGACTGCCTACATCCAGCACATGCCCCAGTCGAGCACCATTCTGGCTATTCAGGCTGATGGCACAGTGGCAGACCTGCAAGCTGAGGGCACTATTGACCCTGACACCATCAGTGTGCTGGAACAGTATTCTGCCAAGATGGAGGGAACAGAATGTGGCACAGGGCTGCTTAGTAGAGGCGACGCTGATGGCAGTGTGCATATGCAGATTGTACTCCAGGGTCAGGAGGGCAGGTCTCCAAGAGTGCAGCATATTGGGGAAAAGGCCTTTCGCTGTGAACATGAGGGCTGTGGAAAACTCTACACAACAGCAcatcatttaaaaGTACATGAACGATCACATACTGGGGATAAACCTTACATATGCGATCATCTCGGATGTGGAAAAAAGTTTGCGACAGGATATGGCCTAAAAAGTCATGTTCGAACACACACTGGGGAGAAGCCTTTCAAGTGCCCATTTGAAGGTTGTGGGAGATCTTTCACCACCTCAAATATTCGAAAGGTTCACATCCGAACACACACTGGTGAGCGGCCGTACTACTGCTCTGAACCCAACTGTGGAAGAGCTTTTGCCAGCGCCACCAACTACAAAAACCACATGAGGATCCACACAGGTGAGAAGCCATATGTGTGCACTGTGCCTGGCTGTGATAAGCGCTTTACTGAATACTCCAGTCTCTACAAACACCATGTGGTCCATACTCCCTGCAAGCCCTACAACTGCAACCACTGTGGGAAGACCTACAAGCAGATCTCCACGTTAGCCATGCACAAACGCACGGCACACAATGACACCGAGCCCAttgaggaggagcaggaggccTACTTTGAGCCACCTACAGAGGCCATTGATGACCCTGCATTAACATTTACCCCTGCTGTGgtggaggaggatggaggatCAGAGCAGGTTTCAGCAGGAACAGAGATCATGAGTCAGCAGCACGTAGCACTCATCTCTCAGGACGGCACACAGCAGGTTTTTTCTCAGGCAGACGTTCAAGCAATGAGTGGCACAATAACGATGGTAACACAAGAAGGAACAACTATAACCATCCCTGCCCATGAGGCAATGCTTTCCTCCGGAGAAGGTCATTCTGTCACCATGGTTTCTGCAGATGGCACAGAAGGACAGGTGGCAATTGTGACGCCAGATCTGTCCGTGTTCCAGACTGAGGACGGAGAGCTGGTGCATGAACAGCAGCAGCGGCCGGTGGTATCCACCAGCCCACATCCAGTTACTCTGCTGGCTACCTCTAACGGCACACACATTGCTGTGCAgcTCAGCGATCAGCCTTCGCTGGAGGAGGCCATCAGAATCGCATCACGCATTCAACAAGGAGAAACCCCAGGCCTAGATGATTAAAGCATGACCTTCAATTAAGCAAAatcaccatgtgtgtgtgccgGATGTTCGTGCATGTGCTTGCAGTGAACAACTGAGAAAGTCAAGTATCCAAAAAAATTTGATAGCATCATGATTGCTCTGTTTGAAGAGGactgaatatatttttgtgtggatttatGTACATAACAATGTTTTGAAACTGGAGTTTttgctgtaaatatttatttgattcttCTATTGAAATACTTGACTTTTTAGGatcttaataaatgaaaattgaacAACATTCCA
>XR_003403510.2
CCTTGTCATACTACATCCCGCCCATTGACAGGCATCACGCGGTTATTCATGTTCCGGGGTTGTGGTCTCTGCAGAGCGTTTCCTGCCCTGATGCATGGCGGTCGAACGAAGGGATTGTTGGAAAATTTTTGGAGGTAGACCATGCTCTTGGCCCAGGTGAATCGGGACACCCAGAGCATGGAGTTCCAAAGTGTTGAGGGTGACCCACAGCAGGTCACCCTTTGCCTCACTGAGGCTGTGACAGTTGCAGACAGTGACCACATTGAGGCAATGGATACAGTGAGTTTGCAGGCAGTGACTCTGGTAGATGGCTCCACTGCATACATACAACACAGTCCTAAAGataacAAGATAATGGAAGGACAGGTGATCCAGTTGGAGGATGGATCTGCGGCGTATGTGCAGCACCTCCCAATGCCGAAAGCAGGTGGAGAAGGTCTAAGACTAGAGGATGGCCAAACTGTGCAACTAGAGGATGGGACAACGGCATACATTCATGCACCCAAAGaAACATATGATCAGGGTGGATTACAGGCTGTCCAGTTGGAGGATGGCACGACTGCCTACATCCAGCACATGCCCCAGTCGAGCACCATTCTGGCTATTCAGGCTGATGGCACAGTGGCAGACCTGCAAGCTGAGGGCACTATTGACCCTGACACCATCAGTGTGCTGGAACAGTATTCTGCCAAGATGGAGGGAACAGAATGTGGCACAGGGCTGCTTAGTAGAGGCGACGCTGATGGCAGTGTGCATATGCAGATTGTACTCCAGGGTCAGGAGGGCAGGTCTCCAAGAGTGCAGCATATTGGGGAAAAGGCCTTTCGCTGTGAACATGAGGGCTGTGGAAAACTCTACACAACAGCAcatcatttaaaaGTACATGAACGATCACATACTGGGGATAAACCTTACATATGCGATCATCTCGGATGTGGAAAAAAGTTTGCGACAGGATATGGCCTAAAAAGTCATGTTCGAACACACACTGGTGAAAAACCATACCGCTGCCAGGAGCTCAACTGCCTTAAGTCTTTCAAGACATCTGGAGACCTACAAAAACACACGCGAACACACACTGGGGAGAAGCCTTTCAAGTGCCCATTTGAAGGTTGTGGGAGATCTTTCACCACCTCAAATATTCGAAAGGTTCACATCCGAACACACACTGGTGAGCGGCCGTACTACTGCTCTGAACCCAACTGTGGAAGAGCTTTTGCCAGCGCCACCAACTACAAAAACCACATGAGGATCCACACAGGTGAGAAGCCATATGTGTGCACTGTGCCTGGCTGTGATAAGCGCTTTACTGAATACTCCAGTCTCTACAAACACCATGTGGTCCATACTCCCTGCAAGCCCTACAACTGCAACCACTGTGGGAAGACCTACAAGCAGATCTCCACGTTAGCCATGCACAAACGCACGGCACACAATGACACCGAGCCCAttgaggaggagcaggaggccTACTTTGAGCCACCTACAGAGGCCATTGATGACCCTGCATTAACATTTACCCCTGCTGTGgtggaggaggatggaggatCAGAGCAGGTTTCAGCAGGAACAGAGATCATGAGTCAGCAGCACGTAGCACTCATCTCTCAGGACGGCACACAGCAGGTTTTTTTCTCAGGCAGACGTTCAAGCAATGAGTGGCACAATAACGATGGTAACACAAGAAGGAACAACTATAACCATCCCTGCCCATGAGGCAATGCTTTCCTCCGGAGAAGGTCATTCTGTCACCATGGTTTCTGCAGATGGCACAGAAGGACAGGTGGCAATTGTGACGCCAGATCTGTCCGTGTTCCAGACTGAGGACGGAGAGCTGGTGCATGAACAGCAGCAGCGGCCGGTGGTATCCACCAGCCCACATCCAGTTACTCTGCTGGCTACCTCTAACGGCACACACATTGCTGTGCAg

Function

symbol description
znf143b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and positive regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in forebrain; hindbrain; and midbrain. Orthologous to human ZNF143 (zinc finger protein 143).
znf143 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of snRNA transcription by RNA polymerase II. Predicted to be located in nucleoplasm.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K20828 ZNF143_76, STAF; zinc finger protein 143/76

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927480.2 True 2286 mRNA 0.49 16 12396507 12405281
XM_026927481.2 False 2196 mRNA 0.49 16 12396507 12405281
XR_003403510.2 False 1930 misc_RNA 0.51 15 12397687 12405281

Neighbor

gene id symbol gene type direction distance location
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding downstream 845 12388873 ~ 12395662 (-)
swap70b swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307 coding downstream 11154 12363559 ~ 12385353 (-)
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding downstream 92810 12282297 ~ 12303697 (-)
LOC113534448 NA coding downstream 127390 12267333 ~ 12269117 (-)
mgat4c mgat4c,LOC107740326,LOC107553950 coding downstream 205146 12067030 ~ 12191361 (-)
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding upstream 53234 12458515 ~ 12463241 (-)
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding upstream 60865 12466146 ~ 12476898 (-)
has3 has3,LOC107740342,LOC107672271,LOC107707223 coding upstream 76950 12482231 ~ 12489322 (-)
tango6 tango6 coding upstream 86114 12491395 ~ 12518992 (-)
il17c il17c coding upstream 114264 12519545 ~ 12522723 (-)
G98343 NA non-coding downstream 120278 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 121096 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 699842 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 703428 11690997 ~ 11693079 (-)
G97831 NA non-coding downstream 919393 11396116 ~ 11477114 (-)
G98383 NA non-coding upstream 72622 12477903 ~ 12478277 (-)
G98551 NA non-coding upstream 306813 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 323163 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 333668 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 358618 12763899 ~ 12774207 (-)
admb NA other downstream 51055 12311822 ~ 12345452 (-)
sspn sspn other downstream 518303 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 626521 11752525 ~ 11769986 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other downstream 785543 11586057 ~ 11610964 (-)
pdf pdf,spata2l other downstream 1216899 11172687 ~ 11179608 (-)
akip1 LOC108264820 other upstream 15156 12420437 ~ 12423978 (-)
G98770 NA other upstream 640542 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1145399 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1930655 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2941885 15347166 ~ 15357563 (-)

Expression


Co-expression Network