nutf2 (nutf2)


Basic Information

Item Value
gene id nutf2
gene name nutf2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15105315 ~ 15119718 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927495.2
CGAATGTGCGTTATTAGTGCGCATGCGCAAAAGAGCAGGCGGCTGAACTTCTCCACCGCGCGCTGTAATCGCCATAACTGGACCCGAGGATAGCTACGGTTAGGGCTCGCGGAGTGCCTGTAGCTGGGTGAATCAGGATGGGAGACAAGCCGATCTGGGAACAAATAGGATCCAGCTTTGTTCAACATTACTATCAACTGTTTGACACGGACAGAACTCAGCTTGGATCAATATATATTGATGCCTCATGCCTTACGTGGGAAGGACAGCAATTCCAGGGAAAAGCAGCGATTGTCGAGAAACTCTCTAGCCTGCCCTTCACAAAAATAGcccacagcataacagcacAAGATCACCAGCCCACTCCTGACAGCTGCATATTGAGTATGGTAGTAGGACAACTAAAAGCAGATGATGATCCCATCATGGGATTCCATCAGAGCTTCATCCTGAAGAACATTAACGATGCGTGGGTGTGCACCAACGACATGTTCCGCCTAGCAATCCACAACTTTGGCTAAAAAGCACCACGGCTGTCGGGGGAAATGGGGGAAGGTGGAGAACGGGGCATATCGCCCCCCAGCGATGCCTGAACCTCAGTCTGCCCTTCATTCATCTTTGAGATTCAGCACCGGATTCCAAGAAGTCAAATCACAGataacacacaggcacacagtaGCGCCTCTGCTCCAGACATGAGAAGTGTTTCTTTGCTGAAAGCCCACAGTTCCATCAAAGTGACCCCTTTCCCCTCTGCTGATGTGCATGATGATGGCGAGCTCGAATATCAGAGGACACTgacctgggaaaaaaaaaaaaacagacatattaACATACCTTCTGCCAGTTActactatttacattttagttccTGAGTTCGACTTTGAATTAATAGCTGTCTTAACTGCCTTTCATTGCTTTAGTACTTATTGTGTTATCTGCTTGCTTTTAGAGTTTGCTTCttggcacttttttttcttcttccttttccctCTTGAACATTGGAGCCTCCATTCATTGTGATGTCAGGTTGCTCTAGCTATCCAAAGAAACGTTAAAGTAAACACCCCCCCCAGATCCCCCACCCCTTCAGACCAGTGTGCTTCTCATCTTCTGCTCACTGCTCTCTGTGACAATAATTACCAagccacaagacacaataaaaCCTTTGACTTTTTCTTAACCATTGCATCATCTTGTTCCTCCCACTGTCTGGTCTTACATatgtcttttttgtttatgtataaCCAGTTTCTTAATGCTACTGGAAATCGTTTTGGAAATAGTATTccttaatgaagaaaaagaattgAAGAATCTGGTAATCTTCTATCAAGAGTCATTTGCCTAACTAGCAGAATAAGCAGTCGATCCTCTAATATTATATGTATTTGGTTTTCTAATGTAGTAATGACTTCGCTATTGTATTTGTTTTGCATGCATTACAGATATAAATTCAGTATTGGAAACACTGAACCAATAGTTATATCAAACTTCCTTTGTTCGATAATGATAACGGACTAAAGAGGAAGATAATATTGTGGAGACACAAGAGGTCTTGTGAAAAAATCCTTCTGGCTAGAAATATTTCTGTGAAGGTAGAAGACAGTCATTCTTCTATTGCTGCACGCTTAAGTAGATAATTATGTGGAAATGGTTTGTGCTTAAATAAGTACTAATACCTTGCAGGCTGAAATATCACTGTGCCTCCATCTGACTACTCCTCATGTACACCAACTCACCAGTAGGTCTTATtatcaaataatattaatgaagaCTAATTGTAACTATTTGGATTTGTGAAAGTTTGTTTAGACAGTGAAGAGAGGCTTTGAGGAAAAATCAGTTTACAGGAGCAATAAAGTGATGTAAAAGGATTACATGTAAGCTATTCCTATTGGCATGACTATGACTTTGAGCTGACTGTACAGATGTTGGAAATAGCCTTAACTGTGGATTGTGTCCTCTTGCTTAAGCACTCAGGTGTTTAAAGAAGTGTTACTGGAACCTCAGATAGAAGCTGACGTGATTTACCCCAAGTCTCGTTTGCTACATTTCTTTCTAGTCTCATGcaaatgatttgttttgttatacTCTGCATGCGTGCTCTGCTTTATGGAGATTCACCTCTCCAGTAAGTGGTAgcagaagaaggaaaaagaaagtattttccttttaaaacaaaagcaacaaaTGGCGTGTAATACGGACAGTATTTCAATTTCTGCCATGTAAGTTATATGGAAATAAAGGCCATCAAATCGA

Function

symbol description
nutf2 Predicted to be involved in protein import into nucleus. Predicted to be part of nuclear pore central transport channel. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human NUTF2 (nuclear transport factor 2).

NR:

description
PREDICTED: nuclear transport factor 2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927495.2 True 2265 mRNA 0.41 5 15105315 15119718

Neighbor

gene id symbol gene type direction distance location
edc4 edc4,LOC107733561,LOC107726309 coding downstream 205 15075874 ~ 15105110 (-)
nrn1la nrn1l coding downstream 32820 15043298 ~ 15072495 (-)
pskh1 pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554 coding downstream 78447 15018958 ~ 15026868 (-)
mbtps1 mbtps1,LOC107672278,LOC107694940,LOC107596929 coding downstream 90178 14988788 ~ 15015137 (-)
slc38a8a slc38a8 coding downstream 127165 14969784 ~ 14978150 (-)
tsnaxip1 tsnaxip1 coding upstream 1329 15121047 ~ 15132206 (-)
pard6a pard6a,LOC107692936 coding upstream 57493 15177211 ~ 15200248 (-)
LOC113534617 LOC108264368 coding upstream 351911 15471629 ~ 15473015 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding upstream 366295 15486013 ~ 15499252 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding upstream 955229 16074947 ~ 16083613 (-)
G99493 NA non-coding downstream 456322 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 501843 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 569305 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 585531 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 652208 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 29685 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 40485 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 51593 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 56457 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 177887 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 758307 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1542741 13550680 ~ 13562574 (-)
G98770 NA other downstream 2053004 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2681337 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2700034 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 227448 15347166 ~ 15357563 (-)
G101178 NA other upstream 3067729 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4860351 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5276148 20395866 ~ 20416574 (-)
G102566 NA other upstream 5833884 20953602 ~ 20966910 (-)

Expression


Co-expression Network