LOC113534617 (LOC108264368)


Basic Information

Item Value
gene id LOC113534617
gene name LOC108264368
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15471629 ~ 15473015 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927538.2
tgcaaattatatatgaGTATAATAACATTTAGGTGTAGATTAGTTTCATAAtttttgaagagagagagagagagagagagagatgggttcTAGTGGATTCTAACTTTTTGGAAATGTGTTTAAGGAAGCTATGGTTTGAAAGACAAGTTCTCTCAGCGGTTTTTCACACGCAATATAGTAGCCTGTTTCCACACGTATGCACAACCTTCAAGAGGAACAAGAGAGTTTTTGAACTCCAGTCTGGAACAAAGTGTTTACTCTTGGCTGTACAGTTGCTTGACGATGGAGCATCACAACTTTAGCGTCAATCAGACTTCTGAGTCTGATTTTGTCATCACCAACAGTACTGTGGGCTCCAAACAGGTAGGCGCTGCAGTATTTCTAAGCATGTGCTGCTTGGTTGGATTGCCCAGCAACATTGCAGTTATCGTCACCATCGTTCGTCAATGGAACAAACGTATGAGCTTCACTGTGAAGCTAATGCTAAACCTGGCTATATCTGATTCTTTGGTCCTCAGTTTGACTCCTTTTGGAGTTTCTGGTCTGCTGTATGGATGGACTTTTGGCCTTTGGTCATGCAAGATTCTGATGTATCTCATCTACTGTGCTATGTATGGTAGTGTGTTGACTGTGACTATGATGGCTGCACATCACTACCACACAATTAAGTCAAAAGTTCCTAATCTCAGTGCTCTGGAAAGACTGCAGAAGGTTCGTAGACACTTGCTGTTAATTGGGCTCTGGAGTTTATCCATAGTTTTTGCCTTGCCCATACTTTTCATTCAAGATGTTCAGGTCAAGAGGGGATCTCAAAGGTGCCAGAGGACCATAACATCACCCTCTGTAAAGGTTACAGTTCTTGTGTTAGAGGTCCTCTTTGGATATGTTCTCCCTTTCATCATTATAGCTGCATCTTACTGCTGGATCTGCAAGACACAGCTACAAGGAGGTAGAATAATTGAGGAACGGAAGAAGAGAATGAGAATGCTCGTGATCAGTATTGTCACAGCCTTCTTTATTTTCTGGACTCCTGTACATATCATCAACGTGATTGACATTGCTACTACTCTGACTAAGACATCGAATCCAGCTCTCTATGATCAACTGAAACTGTTTCGTCGAGCAACCGGAGATTTGAGCAAAACTGTCTCTGTACTTAACTGCTGTGTGAACCCCTTTCTGTATGCAGTCGCATCAGGGATCTTCAAGAAAAGGAGGCCTTGccaagaaaaggaaaacaacacagaaaacacattaGTGTAgtatttctttattcttcttaaacTCTCATGTTGTACTTTATTGCTATGTGAAGCATtttgaaatttgttttattgcatttggTGACTCCTGTTTGCcttatattgtgtatatgtaaTGGACTGTA

Function

NR:

description
PREDICTED: leukotriene B4 receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927538.2 True 1387 mRNA 0.41 1 15471629 15473015

Neighbor

gene id symbol gene type direction distance location
pard6a pard6a,LOC107692936 coding downstream 271381 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 339423 15121047 ~ 15132206 (-)
nutf2 nutf2 coding downstream 351911 15105315 ~ 15119718 (-)
edc4 edc4,LOC107733561,LOC107726309 coding downstream 366519 15075874 ~ 15105110 (-)
nrn1la nrn1l coding downstream 399134 15043298 ~ 15072495 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding upstream 12998 15486013 ~ 15499252 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding upstream 601932 16074947 ~ 16083613 (-)
LOC113534689 NA coding upstream 1108347 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 1207907 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 1465876 16938891 ~ 16944430 (-)
LOC113534479 NA non-coding downstream 34713 15433395 ~ 15436916 (-)
G99941 NA non-coding downstream 153762 15317509 ~ 15317867 (-)
G99915 ctcf non-coding downstream 172051 15297605 ~ 15299578 (-)
G99801 NA non-coding downstream 290717 15176175 ~ 15180912 (-)
G99784 NA non-coding downstream 298195 15171311 ~ 15173434 (-)
G100023 NA non-coding upstream 4486 15477501 ~ 15478166 (-)
G100027 NA non-coding upstream 9814 15482829 ~ 15483037 (-)
G100028 NA non-coding upstream 10988 15484003 ~ 15484301 (-)
G100034 NA non-coding upstream 73561 15546576 ~ 15548763 (-)
G100007 NA non-coding upstream 130244 15603259 ~ 15603536 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 114066 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 1124621 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1909055 13550680 ~ 13562574 (-)
G98770 NA other downstream 2419318 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 3047651 12420437 ~ 12423978 (-)
G101178 NA other upstream 2714432 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4507054 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 4922851 20395866 ~ 20416574 (-)
G102566 NA other upstream 5480587 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 5522326 20995341 ~ 21013100 (-)

Expression


Co-expression Network