si:ch211-245j22.3 (si:ch211-245j22.3,LOC108264234,LOC105895582,LOC104937698,LOC107749310,LOC108425778)


Basic Information

Item Value
gene id si:ch211-245j22.3
gene name si:ch211-245j22.3,LOC108264234,LOC105895582,LOC104937698,LOC107749310,LOC108425778
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11578245 ~ 11581884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927540.2
AATTACATTTGAGGCCCCCCAACGTGCTTGTGCCCCCTGCTAAGAGATTAGGTTTGCCTAATTTCATGGCTGCAGGAGGGAATCTGTAAGAGTGATTAAGCTTGAGAGAGGTAAGCTGGGCTTTGGTATATAAACGTGTGTGCCTGAAGTAGCTGATAGTGGAACACAAGTGAGGATGGGACAGGCTGCGACTTTACCCTGCAGAAGCGGAGGCACCTACGTCACAGAACTTTATGAATGGTTTAGGAAGTTCTTAATCGAGTGTCCGAGTGGCCTGATCACTCTGCATGAGTTCAGACGTCACTTCTGTGATGGAACTGTGGGACTGGAGTCTGCAGAATACGCTGAGCAGATCTTCCGTACACTAGACAACAACGGGGATGGTTTCGTTGACTTCCGAGAATATGTGATGGCCATTAGCATGCTGTTAGAAGGCTCATCAGTGGAGAAGCTTCGCTGGTCATTTAAACTTTATGACAAGGACAAGGATGGAGCCATAACACGAGCAGAGATGCTTGACATCATGCAGGCTGTGTATAAGATGAGTGTTGCAGCCTCTCTAACCAAACCTAATCCACTGACTGCTGAGGAATGCACCAACAGGATATTCATACAACTAGACAAAGACAACAATGCCATCATCAGTCTGGAGGAGTTCATTGAGGGGGCACTGGATGATGAGTGGATAAGAGAGATGTTGGCGTGTGACCCCAACACTGTAAAGGTAGAGCGACCTCGTAAGGGTTCCTCTGGATCTAAAGCATTGGGTTCATCTGAGCCTACAGAATGAAGGATGTCCAATCTGCTGGAGCAGTAAAACAGTATTTCTGGCACTCCCCCTACGCCACACATCTAAAGGGTtactgctctaacacacccagaCCCTTGAGATTTAActtttttagattaataaacactaaaatttGAAGGCATGATGATGAAAGACCATGTTTTGGAAACACTACACCAAAGGCAGCTTTCTGCTGGGTGTGtaatgttcaataaataaaataaaattattgcgTTGATAAATGTGTCTGACCCTCTCACAGTTCTCATGAGACTGTATTGTTTGCTATGTACTGTGATGCTAAAGCATTTTAGGATGACTATTATGTCATATTTGATATAAGAGGCTGTAGAGACATCAAGACATTTCAGCTTTAAA

Function

symbol description
si:ch211-245j22.3 Predicted to enable calcium ion binding activity.

NR:

description
guanylyl cyclase inhibitory protein-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927540.2 True 1168 mRNA 0.44 5 11578245 11581884

Neighbor

gene id symbol gene type direction distance location
ppfibp1b ppfibp1 coding downstream 1257 11543660 ~ 11576988 (-)
endouc LOC108264851,LOC108425714 coding downstream 35864 11537242 ~ 11542381 (-)
polr3b polr3b,LOC107664690 coding downstream 42581 11508775 ~ 11535664 (-)
rfx4 rfx4 coding downstream 71555 11489642 ~ 11506690 (-)
ric8b ric8b coding downstream 93787 11470088 ~ 11484458 (-)
si:ch211-219a15.3 LOC108264201 coding upstream 90497 11672381 ~ 11675853 (-)
slc6a15 slc6a15,LOC107553966,LOC107740320,LOC107672330,LOC106573109 coding upstream 323724 11905608 ~ 11926257 (-)
rassf9 rassf9 coding upstream 454090 12035974 ~ 12047751 (-)
mgat4c mgat4c,LOC107740326,LOC107553950 coding upstream 485146 12067030 ~ 12191361 (-)
LOC113534448 NA coding upstream 685449 12267333 ~ 12269117 (-)
G97831 NA non-coding downstream 101131 11396116 ~ 11477114 (-)
G97607 NA non-coding downstream 387405 11190641 ~ 11190840 (-)
G97601 NA non-coding downstream 390222 11187495 ~ 11188023 (-)
G97246 mlycd non-coding downstream 917193 10657192 ~ 10661052 (-)
G97225 NA non-coding downstream 1057248 10520795 ~ 10520997 (-)
G97932 NA non-coding upstream 98845 11680729 ~ 11696665 (-)
G97931 NA non-coding upstream 109113 11690997 ~ 11693079 (-)
G98342 NA non-coding upstream 692391 12274275 ~ 12275411 (-)
G98343 NA non-coding upstream 693838 12275722 ~ 12276229 (-)
G98383 NA non-coding upstream 896019 12477903 ~ 12478277 (-)
pdf pdf,spata2l other downstream 398637 11172687 ~ 11179608 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 996343 10527110 ~ 10581902 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 1283422 10266978 ~ 10294823 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other downstream 1659764 9822233 ~ 9918481 (-)
LOC113534661 NA other downstream 1806225 9750882 ~ 9772020 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 4173 11586057 ~ 11610964 (-)
plekhg7 plekhg7,LOC107583891 other upstream 170641 11752525 ~ 11769986 (-)
sspn sspn other upstream 289024 11870908 ~ 11878204 (-)
admb NA other upstream 729938 12311822 ~ 12345452 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 814623 12396507 ~ 12405281 (-)

Expression


Co-expression Network