si:dkey-12e7.4 (LOC108264682,LOC108424351,LOC106560815,LOC107578981)


Basic Information

Item Value
gene id si:dkey-12e7.4
gene name LOC108264682,LOC108424351,LOC106560815,LOC107578981
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14730120 ~ 14735155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927554.2
TTTACTCAAAGCCAGATCTGTGTCATCACACGTGTTGTCTGGGTGTGCCACATGCAGCTCTGCTGTCCTGCAACTGTACACCACTGATCTGGTCACTCCAGTGTTTGCAAGGGCAAAGCTTACAGTGAGATCGGCTTACAGTAATCATCTGAGCGAAATTCTTTAACGTGCCTGGCTCCAGTTTCCAGCAGGCTGGAAGAATAACCGCAATCCACTCCAAAAGAAAGGATCGAGTAGGTGTTTTAATCGCATCATGAGTAGCGTGTTTCGAAACTGCAAATCTGTCCTTGTAACCGGTGCTAACCGAGGCCTCGGTTTACAAATAGTTGAAAGCTTAGTAACTGGAGGAGGTTATGCAGGAAAGGTCATCGCTACTGCACGCAGTCCAGGCGAAGCCGAGGAATTGCAGAACCTGTCCAAGAACCATCCAAacatacacaccatcacacttgATGTTGTCAGTGAAGAGAGTATAAAGAAGGCTGCTGTGGAAGTAGAACAGATTGTTCAGGAGGATGGCCTCAACTGCCTTATCAACAATGCTGGCATCAACGTCATAGCCGACTTTGAAACAGTGACCGCTGAGAAAATGTTGGAGAACTTTCATACAAATTCTGTAGGACCCCTCATGATCACCAAGGCTATGCTTCCTATGTTAAAGCGGGCTGCTGCAAAAGGGGTAGGAATGGGCATCCACCGAGCCGCAGTCATCAACATGACCTCACTCTTGGGCTCAGTGGAGCTCAATTGGGGAGAACGTGCCAAGGACTTCAAATGGTACCCATACAGAACATCAAAGAGCGCACTGAACATGATCACTAGATGTATGGCAGTGGACCTGGAGGCTGATGGGATCCTCTGTATGGCTATTCATCCTGGCTGGGTGCGCACAGATATGGGAGGGCAAGAGGCACCATTGAGTACAGAAGAGAGCATCAGCTCTGTCTTGGCCGTGATTGGCAGCTTGACTGAGAAGGATCATGGAACTTTTCTGCACTACACTGGTGAAGCTCTGCCTTGGTGATGTTGCTGAGGATgagcaatatacagtattagaaATTATAAAACTGCTAAAAggtttgtgtgttatttgttaGATATTGCTGATGTATGCTTTGTTAAAAATTTAAGTTCCACTTTGTTTCTAAATATTCTCTAGGGAAATATGCTAACCAAATTAAAACCGTGATATTTTAATCCTTGCAATAGTTAGAGCAACACCGGTTTCTTAAAAATATTGAAAGATTTGCTGATGTTCAATGTGCAcagtattaattatattatgcaTAAAACACAGTAGAGATAGATCATTTCACTGTATTTGAGATAAGTCTCCTTAAGTAGGTATGTGTGAAGTCAACTggaaatacatgtaaatgtatatattatttaaatacatgaaATATCTTAATAAATAATCTATATTTGTGTGTAGTTATTATGTAGAGAGCTTTTCTTATTAAAAGTATCAGACAGAGCTATTCTTTTTCATGTGACCTGTGAAGTAAACATTGTTGTCATTGGGTCACGTGTTAACTAGCAAATAAACCTAAAACCAACAAGACACCTTACTTTCATCCATCTGCCACAGTGAGCCCTGTTTCCTTTTCTTGTTCATTACTgttagctgtgttttttt

Function

NR:

description
uncharacterized protein LOC110495324

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927554.2 True 1639 mRNA 0.42 6 14730120 14735155

Neighbor

gene id symbol gene type direction distance location
syt19 LOC108263939 coding downstream 514 14719885 ~ 14729606 (-)
si:dkey-12e7.1 si:dkey-12e7.1,LOC108264421,LOC108427511,LOC103035474,LOC107596938,LOC107583743,LOC107738678,LOC105904526 coding downstream 56758 14670313 ~ 14673362 (-)
anpepa anpep coding downstream 62389 14657970 ~ 14667731 (-)
igf1ra igf1r,igf1ra,LOC107672255,LOC107596941 coding downstream 100169 14536079 ~ 14629951 (-)
synm synm coding downstream 200263 14520667 ~ 14529857 (-)
got2a got2,LOC107694944,LOC107596935,LOC107738675,LOC107726360 coding upstream 258 14735413 ~ 14742680 (-)
calb2a calb2,calb2a,LOC108264862,LOC107672188 coding upstream 13467 14748622 ~ 14760494 (-)
pnp6 LOC108264829,LOC108424368,LOC103033869 coding upstream 36125 14771280 ~ 14781553 (-)
slc38a8a slc38a8 coding upstream 234629 14969784 ~ 14978150 (-)
mbtps1 mbtps1,LOC107672278,LOC107694940,LOC107596929 coding upstream 253633 14988788 ~ 15015137 (-)
G99493 NA non-coding downstream 81127 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 126648 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 194110 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 210336 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 277013 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 414248 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 425048 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 436156 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 441020 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 562450 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 383112 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1167546 13550680 ~ 13562574 (-)
G98770 NA other downstream 1677809 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2306142 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2324839 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 612011 15347166 ~ 15357563 (-)
G101178 NA other upstream 3452292 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 5244914 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5660711 20395866 ~ 20416574 (-)
G102566 NA other upstream 6218447 20953602 ~ 20966910 (-)

Expression


Co-expression Network