hsf4 (hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602)


Basic Information

Item Value
gene id hsf4
gene name hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15486013 ~ 15499252 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927603.2
ATGCAGGAGTCACCAGGTTCCATAGGTGTGGATGGAGGCTATGCCAACAACGTGCCGGCATTCCTCACCAAGCTGTGGACGCTGGTGGAAGACCCGGAGACCAACCATCTCATCTGTTGGAGCACTACTGGTACCAGTTTCCATGTGTTTGACCAAGGCAGGTTTGCCAAAGAGGTTCTGCCCAAATACTTCAAGCACAACAACATGGCCAGCTTTGTGCGCCAGCTCAACATGTATGGCTTCAGGAAGGTGGTGAATATTGAACAGAGTGGGCTGGTGAAGCCAGAGAGAGATGATACAGAGTTTCAGCACCTGTACTTCCTCCAAGGCCATGAGCATCTTCTAGAACACATCAAGCGCAAGGTGTCTATAGTAAAAAGTGAAGAGACTAAATTCAGGCAGGAGGACCTAAGCAAGCTCCTGTATGAAGTACAGGTGCTTCGCAGCCAACAAGAGAACATGGAGTGCCAGATGCAAGATATGAAACAGCAGAACGAAGTATTGTGGAGGGAAGTGGTGTCACTGagacagaaccacacacaccagcagaAAGTTATgaacaagCTGATTCAGTTCCTGTTCAGCCAGATGCAGGCGAGCCCCCCCAACACGGTCGGAATGAAGAGAAAATTGCCCCTGATGTTAGATGATGGCTCCACCACTCCTCCTACCTCCAAACTCAGTCACAGCCAATCCATGGAGTCCATACAAGAGGCCTTCTACATTCAATCGCCATCCACAGAGGCTGCCTCTTGTTCCACTAGCAACACAATGACAGTAGGGCCAATCATCTCCGATGTTACTGACATGTCACAGCCTAGTGCGATGGCTATTCAAATGGAGGAAGCAAGGGAAAGATGTCCAATGATTATTAAGGAAGAGCCAGTGAGTCCAGGTGTGCACAGGTGGAGTGAGGACGTTTCTTGTGGTGTGTGTACTGAACCCCCCATTCTCCCCTTGGCCATGGTACAATCCGTCCTAGAGGGCCGAGGACCAGGCTCTGGAGAGAGGAGGGCCAAGAGGACCATGGACAGGCCAGAAACTTCTGAAGCTGTTGAAAATGTGGACATGAGCTTTGAGGAGCTACAGCTGCTCCTGAGAAGCCACCAGCAGAGTATGGAGTCCAGCTCTGCCAATGTGGATACATTTACTTTTAGTATGCCCATGAATGAGTGGAACTTCACAGAGATGGACCCAAATCTCAAATCAGAGTTGGCCAACATCCTTGTCCCTGCTGCTATGTCTCAGTACATGTTCCAGTGTCAGGAGGGTGAAGTGTGCAATGCTAATGGCTGTGAGGAACAGTAAGATCCTGACACTGCATCTGGCACAAGTTCCTCTTCTCGGACCATCAGgtcatcctgcaaatCATTTCAACTGACTACTGGCTTCTCTcgtaccttccttatcattagtgtGAGAGCGGGTTGTGAAAGCTTGTGTGGCACACCTATCCGGGGATGATTAGTTGTGGTTTCATGAACTTTTGACCTGCATATTATTGAACCAGCTGTACCTACAGGGATGTTTAAGATTTTTGCTATGGCTCTAtagtttttttccatttaaggGGTGTTGTccctttaggaagctccttcaccatgattgctatTTCTTGTGTGAAATCTTCCTGATCAATGCCAAAGTTTTTTATAATGACACCCAGTACAATTTGCATGAGAACTTTTTTG

Function

symbol description
hsf4 Enables sequence-specific DNA binding activity. Involved in maintenance of lens transparency. Acts upstream of or within lens development in camera-type eye; positive regulation of deoxyribonuclease activity; and regulation of lens fiber cell differentiation. Predicted to be active in nucleus. Is expressed in eye; lens; and solid lens vesicle. Used to study cataract. Human ortholog(s) of this gene implicated in cataract and cataract 5 multiple types. Orthologous to human HSF4 (heat shock transcription factor 4).

NR:

description
PREDICTED: heat shock factor protein 1-like

GO: NA

KEGG:

id description
K09417 HSF4; heat shock transcription factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927603.2 True 1691 mRNA 0.48 13 15486013 15499252

Neighbor

gene id symbol gene type direction distance location
LOC113534617 LOC108264368 coding downstream 12998 15471629 ~ 15473015 (-)
pard6a pard6a,LOC107692936 coding downstream 285765 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 353807 15121047 ~ 15132206 (-)
nutf2 nutf2 coding downstream 366295 15105315 ~ 15119718 (-)
edc4 edc4,LOC107733561,LOC107726309 coding downstream 380903 15075874 ~ 15105110 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding upstream 575695 16074947 ~ 16083613 (-)
LOC113534689 NA coding upstream 1082110 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 1181670 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 1439639 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 1589389 17088641 ~ 17307902 (-)
G100028 NA non-coding downstream 1712 15484003 ~ 15484301 (-)
G100027 NA non-coding downstream 2976 15482829 ~ 15483037 (-)
G100023 NA non-coding downstream 7847 15477501 ~ 15478166 (-)
LOC113534479 NA non-coding downstream 49097 15433395 ~ 15436916 (-)
G99941 NA non-coding downstream 168146 15317509 ~ 15317867 (-)
G100034 NA non-coding upstream 47324 15546576 ~ 15548763 (-)
G100007 NA non-coding upstream 104007 15603259 ~ 15603536 (-)
G100072 NA non-coding upstream 154134 15653386 ~ 15655787 (-)
LOC113534668 NA non-coding upstream 191029 15690281 ~ 15726357 (-)
G100154 NA non-coding upstream 364328 15863580 ~ 15863779 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 128450 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 1139005 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1923439 13550680 ~ 13562574 (-)
G98770 NA other downstream 2433702 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 3062035 12420437 ~ 12423978 (-)
G101178 NA other upstream 2688195 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4480817 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 4896614 20395866 ~ 20416574 (-)
G102566 NA other upstream 5454350 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 5496089 20995341 ~ 21013100 (-)

Expression


Co-expression Network