tango6 (tango6)


Basic Information

Item Value
gene id tango6
gene name tango6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12491395 ~ 12518992 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927619.2
CATGACGTTTAATTCGCGCGACGTAGTTTCGCATGTGCTTATCTCGTGTTGTTGACAAACATGACCACGGCGCTTATAACTGCACTGAGCATCCTTACCAAACCTATTCGAGaGGCCAATTTGAGTGGCCCACAAACAACCCAACAGGAAGTGATTGTGTCTGCTCTCCAGAGGAACCAGTTGGAACTGAAGCGATTGTTAGATGGCGGAGAGCTGGAGGAGGCCCGCCGTTTACTGGAGGAAGTCAGGAGCGAGACACAGTGGTTCTGTGCTCACACTGAGGACCTAACCTGGAGCTTTGTACAGGAATGcctcctcctgctgctctgCTTGGCACGCAACCTCAGCAGGCTGGTGGAGGCTTTTAACCGGGACTCAAGTCCTGCTGTTCCAAACCCTCGTGCTCCGGAGGCAGCTCCGCCATTACCTCCTGATGTCCTTAGTGTATCTCAACAGAAGACCCTAGGCACTGTGCTACAGTTTCTTGTCACCCTGGGCCTGTGTCCATACTTGGTCCCTGGGGTGGGGGTGAGTCTGGCGCTGCGCTCTGCGTTTGGGGTTGCTGTGGAAGGTGCAGTGCGTTGTGATGTAGCCCCACCCTGTGAACGCAGACTTCTCATAACCACTACTGTTTTTCTTGAGGTGGCTGCGCTGTCGTCCCTGGCCACTCTGGTCTTTACTCGCCACCTGGGTGACCTTATGGCGGCGCTTTGCCAGTTAGGGTATCGGCCTCATCGGCCTGAAGGAGACGGTGCAGAAAATAATAAGggCCTCACTGTGGAAGAGCGGAAGACATGCAAGCAAGAACTTCAGAGTCTTCTGGGAAGAGTTTATCAGCCAATTGTTATCAAAGAGCTGCTGGTTCTTCAAGGGGGCCCCAAGGCAGTTCCAGGCTCCAGGTTGCACCAGGCTCCTGCCTGGTTGAGGCGTCTTTGTGGCCAGCTGCTCTCTGAGAGGTTGATGCAGCCACATGGGGTCCAAGCGGTGGTAAGAGCCATCCTGGAGGGATCAGCAGgtggaGACTCAGATTGGAGAAAATGTGATGCTGTAGCCAAGATCCTGGTGACTTGCCCCCAGCAGTCGCTCTCTTCTGAGAGCTATTACAGTCAAGTGTGCCCACAGGTTCTAGAGCTTCTCCATTTCAAAGACAAGATAACAGCACTGCAGTTCCAGCGAGTGGCCACCAGGGTGGCGCTCACCATGGTGGAGGAACAACCTGAGTTTGCCCAGCACTTCCTactgtctcctctcctcttACCTTTACAGCACTGTGCATCCGTcccagaggCAGCAGGTACTACAGGAGAGGATGTAGTACCTGAGTCTGAGCTGACCTGTTGTGTGGAGGATGTATATAAAATCTATGTGGTGGGTAACAGCCCATCAGGAATGCTGCTAAGCGCACTGGGGGAAGTAATTCCCACAATTGTCAGCCTGTTTTGTTACACCAAACAAAATGTCTCACACCTACGCACCCCCTGTCAGGAGATCTTGCAGTGGTACCTGTCTCATGTGGAGCAGTCATCAGCACTCTTACTGCTCAAACACCTGTGTGTCATGCAGGGGGGTGGAGCTGGAGTTGCACCAGGCTACCATTTCTCACCTGGCAGTGAAGGAGGCGTCAGGCTCACCCGAAAAGACCCAGACTGTGATGAGGATGATGCTCTGTATGAGAAAGTGTCAGGGGATCAGTGGAAAGTGGAGTGTGTCGTGCAGCTCTTGGCTGAGATGAAGGACACTGATCTGCCTGGAGAATTCTTCCTCTCACTCCTGCAGGATCTGACAGACTTAGCAGCAGAGCAGCAGAAGCCTGAAAAGGAAGTAGACACATCTTCCATGACGCTGCTGGAGCTGGAGAAACACCTCACTGGGTGTGTGAGTGGCTATGGTCAGAGGCTGGCTCTCCTACAGACTCTGGCTGTTATGTGTGAGattctgccacacacacagctactgcGTAAGGCCACCCAGgTGGTGAGCTTCATAGAGGCCATGCTACAGAGGGCATGTGTAGGTCTAGAACATGGCTCAGAGAGCTCAGTTGAGAGTCAGACTCTGAGTATGGGAATGGGTCTGGTGGCCACTCTGCTGTCTGGAGCTGCACAGCTGACTCCAGAGGACTACTCCTCCATGGCCAGGCTTCTGGCTCCTTTGGAGCAGATTTCACAGCAGCACCCAGAGCCTGTGATCCAGGAGCTAGCGTCAGATCTGCGGGCTACTATAGCTACACGAGGGGCTTATCACTCAGACTCTGTGACTAATGCTGCCCAATGCTATAGCCATAGCAGTTATGCTCAAACAAAGAATCAGGTGACAAGCCAGAACAAAGGAAATCCTGTCAAACCTAGTGGAAGCTCAGAGAGCCCAAGAGCCCATGTTAGTCAGAACACTGAGATGCCACATATCAGTCAACAGTCACCTAAGGTTCCACCTACCTGCTGTTCAGTCAGTGCACAGTCCACTGCCTCTGTGCCTTCACATTCCCAAAATACAGCAAGTCTTGTCACAGTTAGCACCTCTGCAGAAGTGAGAGAGCAGGCCCAGAATTTGCAGCATAGAgatgaaagaaatggaaaatcaTTTACACTGAAGCCTGCtgccagcacacacacctctgcttcCACTAATCCAACTCCAGAGAAGGGCTTCTCTGAGTGGCTGCTGGAGGCCTGTGACCCCGATGTGCCCACCCGGGCCATGGCACTGCGAGCACTCACCCAATATGTAAAAGAGGGAACCAAGGATGCACTACAGGCCCGTGACAAGCTTCTGATGATATTtttggagaacctggagcatgAAGACTCATTTGTATACCTTTCTGCCATTCAAGgcCTGGTCCTGTTGGCTGACTCATTTCCTGAGCAGATCCTGCAGCGGCTGTTGGCCGAATATCAGGCAGCTCCAAATGCAGCTTCCTCCAGCAGGGGGCGATGTCTGGAGACACGCCTCAAGGTGGGGGAGGCTTTGATGAGAGCTAGTAGAGCCATGGgTGACCTTGCACCACACTATGGCCGCCCTCTGATTGGGGCATTCCTAAGTGGCACACGGGACAACGACAGCAGCGTTCGTGCCAGCTGCCTATCCAACCTGGGAGAGTTGTGCCAGCGCTTACATTTCTCCCTCGGTCCACTGGCACAGGAGTTGAGCATGTGTCTCACAACCCtgataaagacagaaaaagaggctGAAGTGCGGAGAGCTGCAGTCCATGTCATTGCTTTACTACTGAGGGGCCTCAGTGATAAAACCACTCAGGTTCTAGGAGATGTTCTTTTGGAGCTGTATCGGGCTTTGAAGTGGGTGGTTCGCTCTGACCCGGATGAGGTGGCTGTACTCCATGCTCAACTGGCCCTGGAAGAACTTGATGATGTTATGAGGAAATTCATTTTCCCTCAGCAGAAACTGGAGAAGAAGATTGTGGTTTTgccctgactctgaatacctaCATGGCTAAACCTAAAATGTTCCTCTGGCATAAATGTGGTTAAAATAAGAAATTCCCACTACTCATACTCTGAACTTTTGGTGCCTGACAAAGTAGTAGTCAGGCTTTTGTCATCAGACACAGAGGTCAAAGGGCAGGAAGTGTAAAGTAGAGCAAAGCAAAAGACTGAGATTGGCGTTACTCTGCATAAATGACAGAACAGCAGGCTACTCTATGCTATGTACTTAGTTCCTCTTTCCCTCACCCCCACCCTTTTGCACTACATATAGAAAAAGACAGGGTTTTGATATCACAGAAAACGAAGACAAAGCAGGCTGATTCATTACTCCATGTAAAGGTGTCCTTTAAAAGAGGTGAACATGCTACCGAACCTTTCCATATCCTTTAGCTTCCAGAAAGAATTTGTCCTTGATATATTACACATTTGTgctataaattaaattgaataattATAAAGGGAAAATTATTTATCACACAgtgaataaatgtgaatgtttttttttcctttactgcCTTTATAATCCATTCTGATAAAACCATATAGATGTTTGATCATGTTCTGATCATTGTTATACTATTCCATCTATATCCCTATCTATTCccattattttttccttttattttatgatggtTTGATCACAGAAGATTCAGATTATCTCACTTTCACATACAAGGACATTATCACGAGCTAGTACCTTTACAGACTTGCAGGTGGACTAGTTGTTAAAATGTGTCGCATCACTGTGACTAAATTCTGTGAAATGTCCAAAAGTATCAGTTTTGATcataatttagttttttttttttgccaataatATGATTTGACAACTCTGTGTTTACTCTAAGAAAGCAAATAAATGTTATCAAAATGTCAtgggaatgtttttatttggctGCTTTCTAACCGTGCTTTGAAATCTGCCTGCAAAAATCACATTGGATAAGGTGTCAGTTTAAGAAGACATCTTTGGGCAGATAGTGCTGAAGCGAAATGGATTTAAGCCTAATATAGTTCATTTTGGAGCTGTCAAATTGTCTGCAATACATCCTCACAACAGAGAAGAGTTCTTACATGCTCT

Function

symbol description
tango6 Predicted to be involved in protein secretion. Orthologous to human TANGO6 (transport and golgi organization 6 homolog).

NR:

description
transport and Golgi organization protein 6 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927619.2 True 4527 mRNA 0.49 18 12491395 12518992

Neighbor

gene id symbol gene type direction distance location
has3 has3,LOC107740342,LOC107672271,LOC107707223 coding downstream 2073 12482231 ~ 12489322 (-)
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding downstream 14497 12466146 ~ 12476898 (-)
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding downstream 28154 12458515 ~ 12463241 (-)
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding downstream 95733 12388873 ~ 12395662 (-)
swap70b swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307 coding downstream 106042 12363559 ~ 12385353 (-)
il17c il17c coding upstream 553 12519545 ~ 12522723 (-)
zc3h18 zc3h18,LOC106573693 coding upstream 5267 12524259 ~ 12552261 (-)
zfpm1 zfpm1 coding upstream 88881 12607873 ~ 12680438 (-)
foxl1 foxl1,LOC102233982 coding upstream 202754 12721746 ~ 12724527 (-)
b3gnt9 b3gnt9 coding upstream 223361 12742353 ~ 12745627 (-)
G98383 NA non-coding downstream 13118 12477903 ~ 12478277 (-)
G98343 NA non-coding downstream 215166 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 215984 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 794730 11680729 ~ 11696665 (-)
G98551 NA non-coding upstream 193102 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 209452 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 219957 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 244907 12763899 ~ 12774207 (-)
G98588 NA non-coding upstream 283806 12802798 ~ 12803608 (-)
akip1 LOC108264820 other downstream 67417 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 86114 12396507 ~ 12405281 (-)
admb NA other downstream 145943 12311822 ~ 12345452 (-)
sspn sspn other downstream 613191 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 721409 11752525 ~ 11769986 (-)
G98770 NA other upstream 526831 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1031688 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1816944 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2828174 15347166 ~ 15357563 (-)
G101178 NA other upstream 5668455 18187447 ~ 18196806 (-)

Expression


Co-expression Network