il17c (il17c)


Basic Information

Item Value
gene id il17c
gene name il17c
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12519545 ~ 12522723 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927641.2
CTTTGATGTGGACTAACAGACCAAACTAAAGATGTGGTCTTCTCTGATAGTCGGAGTTTTGCTCCTTTCCCTCACGGATGTTCTGACAGGCCAGAAGCATAAAGGCTGTTTGCCTCAGGATGAGCTGATGATCCAGGCGAAGAAGTTCCTGCGGCGGACAGGCAGACACTCTGAGCACAGAGCTGCACGTGCTGTATCCGCCGCGTCCTGCTCCGATTTCACACACTGGGTCTTCTCATCTGATCTGAAGAACCGATCCCTGTCTCCCTGGCGATCAAGAGTTGAGACTGCACATGACCTGATCCCTTCAGTATATGAAGTGGCCGAGTGTCTGTGTTCCGGCTGCATCATTGACGGCTCTGAAAACACCGACTACAACTCAGTCCCGGTGATGCAGAGCGTCATGTTCCTGAAGAAGGTCTCGTGCACCTCTGATCCGGAGAAATACTCTTTAGAAGTTGTGTATAAAACAGTCCCGGTCGCCTGCACGTGCGCCGTGCCCAAACAATAACCTCTTGTAGAGGCATTAGCATTTAAACCAAGACAAAAATGTAGAGACGTGTCTCATGTatggttgtgtttgttttaaaatgcaaaactgTTAAGATTTTtggggtgtttttttatttttatttttattttttttgtataaacagCACTACGTGCTATGTTTATGTTCCATAAGCTGCATTTTCAGCATGAAATTACTATGCAATCAAAGTTGCAGTTTGGTACATTGTCGTACATACactactgtattttttatttatgtaataatttattgactatttatttaaattattcgACTTCTGTTTTGAAGTTctgttttaaagctttattttattttagttgtaTAACTTATAGGCTGCAAgtaatactgtatttaaaatgtattataattatattataattatattttaatataaagtatatgtGTCC

Function

symbol description
il17c Predicted to enable cytokine activity. Acts upstream of or within cellular response to lipopolysaccharide. Predicted to be located in extracellular space. Is expressed in gill. Orthologous to human IL17C (interleukin 17C).

NR:

description
PREDICTED: interleukin-17C isoform X2

GO:

id name namespace
GO:0071222 cellular response to lipopolysaccharide biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927641.2 True 939 mRNA 0.40 3 12519545 12522723

Neighbor

gene id symbol gene type direction distance location
tango6 tango6 coding downstream 553 12491395 ~ 12518992 (-)
has3 has3,LOC107740342,LOC107672271,LOC107707223 coding downstream 30223 12482231 ~ 12489322 (-)
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding downstream 42647 12466146 ~ 12476898 (-)
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding downstream 56304 12458515 ~ 12463241 (-)
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding downstream 123883 12388873 ~ 12395662 (-)
zc3h18 zc3h18,LOC106573693 coding upstream 1536 12524259 ~ 12552261 (-)
zfpm1 zfpm1 coding upstream 85150 12607873 ~ 12680438 (-)
foxl1 foxl1,LOC102233982 coding upstream 199023 12721746 ~ 12724527 (-)
b3gnt9 b3gnt9 coding upstream 219630 12742353 ~ 12745627 (-)
bbs2 bbs2,LOC107686271 coding upstream 225291 12748014 ~ 12762639 (-)
G98383 NA non-coding downstream 41268 12477903 ~ 12478277 (-)
G98343 NA non-coding downstream 243316 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 244134 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 822880 11680729 ~ 11696665 (-)
G98551 NA non-coding upstream 189371 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 205721 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 216226 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 241176 12763899 ~ 12774207 (-)
G98588 NA non-coding upstream 280075 12802798 ~ 12803608 (-)
akip1 LOC108264820 other downstream 95567 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 114264 12396507 ~ 12405281 (-)
admb NA other downstream 174093 12311822 ~ 12345452 (-)
sspn sspn other downstream 641341 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 749559 11752525 ~ 11769986 (-)
G98770 NA other upstream 523100 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1027957 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1813213 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2824443 15347166 ~ 15357563 (-)
G101178 NA other upstream 5664724 18187447 ~ 18196806 (-)

Expression


Co-expression Network