LOC113534689


Basic Information

Item Value
gene id LOC113534689
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16581362 ~ 16610310 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927644.2
ATGCAGCTGGTGATGAAAGCTTCCTATTGGCTAGGAGAAATAATGGAGCAGCAACAGATCAATTGGCTGTgcccaaaacaacaaaatacagGCTACAAGGGATTTATAAAATTGGAAGGTACTCTTCCTAGAACATCTGCCTACAGAAGGAACGTCTTGAAAAGAACTCATTTTACAGAAGGACATGTGGTCAATAGCCAAGGAGAGAAAAGGAACCTGGAGGGAGAAAAGGATTTTAGAGATGAAGAGGTGGAGAACTGTGGGCAAGAGGAGAGAACAGGAGAAAATGGCAGCCAGGGTAGAGCAGGGAGAGAGGAAAGCCAAGAGGAATGTACAGGAAAGGACAGGAGACAAAAGGAGACTGCAAAAGGCAAGAGAATACAGGAAAACGCTGGAAAGGAGAGGGGACAGGAGAAAAGAGATGAGGAGGAAAGTGCAGAAGAGGGGAGAGGACAGGAGGAATATGAAGAAAATTGGAGAGAGGACCAAAGAGGATCTCTAAGAGAAACTAGACATGAAAATCATCTTATGTCCTTGAAGACATGTTACTACTGAGATACCAGtcatcctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927644.2 True 573 mRNA 0.44 5 16581362 16610310

Neighbor

gene id symbol gene type direction distance location
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 497749 16074947 ~ 16083613 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 1082110 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 1108347 15471629 ~ 15473015 (-)
pard6a pard6a,LOC107692936 coding downstream 1381114 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 1449156 15121047 ~ 15132206 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 70612 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 328581 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 478331 17088641 ~ 17307902 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 812051 17422361 ~ 17478285 (-)
LOC117597582 NA coding upstream 1110235 17720545 ~ 17725320 (-)
G100324 NA non-coding downstream 110748 16470357 ~ 16470614 (-)
G100323 NA non-coding downstream 111102 16469648 ~ 16470260 (-)
G100322 NA non-coding downstream 116320 16464830 ~ 16465042 (-)
G100315 NA non-coding downstream 196574 16384557 ~ 16384788 (-)
G100309 NA non-coding downstream 224547 16356598 ~ 16356815 (-)
G100396 NA non-coding upstream 5598 16615908 ~ 16616224 (-)
G100397 NA non-coding upstream 44630 16654940 ~ 16655237 (-)
G100399 NA non-coding upstream 47336 16657646 ~ 16657909 (-)
G100402 NA non-coding upstream 55527 16665837 ~ 16666054 (-)
G100405 NA non-coding upstream 57888 16668198 ~ 16668540 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 1223799 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 2234354 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 3018788 13550680 ~ 13562574 (-)
G98770 NA other downstream 3529051 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 4157384 12420437 ~ 12423978 (-)
G101178 NA other upstream 1577137 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 3369759 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 3785556 20395866 ~ 20416574 (-)
G102566 NA other upstream 4343292 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 4385031 20995341 ~ 21013100 (-)

Expression


Co-expression Network