syt19 (LOC108263939)


Basic Information

Item Value
gene id syt19
gene name LOC108263939
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14719885 ~ 14729606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927725.2
GCCAAATCTATCGCCATAGCTGAACAATAGCTGAAGCCTATCGACAACCAGAGCTGAGAATCTTTTTGTAAAGTGCTGTACATGGCAGGGGGAAATGTTGCTGCCAGCTACTTTAGAGAACTCCTTGTGGGACATTCGGATACCATTCTCAGAGAAAGTTAAGTACTGGGCTTTAGGgatttctgtgtttctttttctcattgCCATCTGTATACTAATATGGCAAATTTATCGATACTGGACACAACTGACTGCTTCCAAGCATACTGTTAATGGCTCACTATTAGACAGCCAGTCTGCAAAAAACCAAACATTTCAAAGCTCACAGATACCCAACGACCAGCTGTATTTCCACAATGATGAATTGGAACCCTTAAGTTGCTGCCTGTCCAGCAGCTCTGATCTGGCCAGCAGTACAGACAGTCTTGGGGATGTGGATGAGGAACAGATTCAGGGCACGCTGCGCTTCTCACTCTTCTATGATCAGCTGCAATCTCGGTTGGTGGTGACTGTATTGGAGGCAAGAGGCCTAATGGCACGAACATTCAGCCAGTGTGTGAACCCCTTTGTCCATGTACGAGTGATGTGGGTAGAAGTGGAGGATGAAGAGCAACAGCTGACTTGTGTGCTTCAGGAGTGGCAGACACGCCCAGTCAAGGACAGCTACAACCCTACATTTGGAGATCAGTTCTCCTGCACAGTGAGTGAGGAAGAAGTGCCCAGGGTCACAGTGCGGCTGGAGGTGAGAGATTTTGATAAATACTCTCGACATGGTATTCTGGGGGAGGTCCGTGCATCTCTGAATGGTCTAAAAATCTCACATCCACTGGAAATGCTGGAAGACCTACAAAGACCAAAGAAAGACATTGTTGGTGAGGTCCTTCTGTCTCTCAAATATATGCCCACGTCTCATAGACTGGAGGTGGGAGTCCTGAAGATAAGGACAGTTTTCCGATCTAGTAAGACGGAAAGAGttttatatgCCAGAACCAAAATTGTGTGTAACCAGTGTAGGATTAGACATCAGAGAACCTCTGAGAGGACTCGTTGGGACGTGACCGTGTTCAATGAGGTCCTGATCTTCGCACTACCAGAAGCTCAGATTAGGGAATGCATCCTCACTTTGTCTGTCTATGAGCTCTGTCCCCGAAAGAGGTCTAAGCGCCTAATTGGTCAGCTAAGCTTTGGGAAGAGTCAAAGCGTGGAGGACGAGCACTGGAAGTTAATGATGTGTGCACCTCGACAGCCAGTCGCCAAATGGCATTTGCTCTACTTATAAATGTAACCACAACATGGACATAAATATGGACTTGACACAATGAACAGTATTGTATTAtacaaaatattgtattatatttcgtataatattgtattatacaaaataatttgtGAACAACATTAAGAAACCACACCGGTGAATTAAAGGATAACTTCCTTAAAACACATCCTGTGACATCTCCAGAAATTTAGGGCATGGACTGTCCTTGTAGGCCAAGATGATGTCGTCCACCTCCCAATGAGCCAACCTCTGCTTAGACAAAGCAGTATACCCTCTAGCAGTATGCTATAAATATACTAACTTTATATACTTAATTAATA

Function

NR:

description
synaptotagmin 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927725.2 True 1599 mRNA 0.44 7 14719885 14729606

Neighbor

gene id symbol gene type direction distance location
si:dkey-12e7.1 si:dkey-12e7.1,LOC108264421,LOC108427511,LOC103035474,LOC107596938,LOC107583743,LOC107738678,LOC105904526 coding downstream 46523 14670313 ~ 14673362 (-)
anpepa anpep coding downstream 52154 14657970 ~ 14667731 (-)
igf1ra igf1r,igf1ra,LOC107672255,LOC107596941 coding downstream 89934 14536079 ~ 14629951 (-)
synm synm coding downstream 190028 14520667 ~ 14529857 (-)
cttnbp2 cttnbp2 coding downstream 217655 14454337 ~ 14502230 (-)
si:dkey-12e7.4 LOC108264682,LOC108424351,LOC106560815,LOC107578981 coding upstream 514 14730120 ~ 14735155 (-)
got2a got2,LOC107694944,LOC107596935,LOC107738675,LOC107726360 coding upstream 5807 14735413 ~ 14742680 (-)
calb2a calb2,calb2a,LOC108264862,LOC107672188 coding upstream 19016 14748622 ~ 14760494 (-)
pnp6 LOC108264829,LOC108424368,LOC103033869 coding upstream 41674 14771280 ~ 14781553 (-)
slc38a8a slc38a8 coding upstream 240178 14969784 ~ 14978150 (-)
G99493 NA non-coding downstream 70892 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 116413 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 183875 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 200101 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 266778 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 419797 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 430597 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 441705 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 446569 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 567999 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 372877 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1157311 13550680 ~ 13562574 (-)
G98770 NA other downstream 1667574 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2295907 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2314604 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 617560 15347166 ~ 15357563 (-)
G101178 NA other upstream 3457841 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 5250463 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5666260 20395866 ~ 20416574 (-)
G102566 NA other upstream 6223996 20953602 ~ 20966910 (-)

Expression


Co-expression Network