pard6a (pard6a,LOC107692936)


Basic Information

Item Value
gene id pard6a
gene name pard6a,LOC107692936
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15177211 ~ 15200248 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927748.2
TTTCGCCGACGCTCTAACGCGCGAGCCTGTGTTTTTCTCCGGCAGTGTTGCGGAGTGACGGATCTGCGTCGTTGTTCGGGCTCGCGCGAGCTAATGCGCCTTACAGGCAGCTGAGTCAGTGGCTTGTCGATTCAGCCCAAGCCGTGGACGCTGAGGCTACTCGCGGGATTAAACATGTCGAGGAATCAGAGGACGCCGCAGAAAAACACGGACAGTGTGGTCGAGGTGAAGAGCAAATTTGAAGCAGAATACCGGCGATTTGCGCTACAGAGGAACGGCACCGTCAGCTTCCAGGAGTTTTACCGGCTGCTGCAGAAGGTGCACCACATTCCAGGCGTTGATGTGCTACTGGGCTACGCTGATGTCCACGGAGACCTGCTTCCCATCAACAATGATGACAACTTCCACAAAGCGCTGTCTTCTGCCAATCCTCTGCTGAGGATTATCATCCAGAGGAGAGATGTGGACGAGCCCGTGGTCTTTGGCACGAACTCTctgcagagaagaaaaaaaggcctGGCAGGTCTGCGTGTCACCCAGCAGAAGAGCAAATCAGGTCTATTGATCAGCCTCCCACAGGACTTCCGCCAGATCTCTTCCATCATCGATGTGGACATCCTGCCTGAGACACACCGCCGTGTGCGCCTGCATAAGCATGGCACCCACAAACCTCTGGGCTTCTATATTCGTGATGGTGTGAGCGTTCGTGTCACGCCACAGGGTGTCGAGAAAGTGCCTGGTGTCTTCATCTCGCGTCTGGTTAAGGGCGGCCTGGCTGAGAGCACAGGTTTGCTCGGGGTCAACGATGAGATACTGGAAGTTAACGGCATTGACGTGGCTGGCAAGTCACTGGACCAGGTTACAGACATGATGGTGGCCAACAGCCACAATCTGATTGTGACGGTCAAGCCAGCCAATCAGCACAACAACGTGATACACAGATCGAGCAAAACCTCAGCTGGCAACAACTCTGCCGGCTCAGGAGGATCCGTGCTTTCCCAGGACTCCATTCCTAGTCCTGCCTCTCAAACCGTTAGCCAATACAGTAACAGCAACAGTGTGATGGAAGGGGACAGCGATGAAGATGAAACCGACCTCATTATCGAGAGTGATAACCTGCCTGCTTATACGTCACATCATCTGACCAATGGAAATGGCATTGTTTCTTCATTGGCTACTTATGGGCAGAGGCCTCTCCCCCAGAGCGTCTCATTGCCTAGTACCAGCTCTATGAGCTCGCACAACAGCAGTCCCAATAAGACAAGCAGCAGCCAAGAAAGCATGAGAGAGGACGGCAACTTCATCACATTGTGAAACACctcaaaaatatttcttatcATATCATATGAACATCCTCATACAAAGTTTTTATGCACAACTAGAACAAAGTGAAGGATAAATGTTTTATGGTACTGTACCTACTGACACAAAACATCAAGTTGATGTTGATCTCCCTAAGAACTCGCCCCCCAGTTGAAGGGGGGATGTGAGCATGGTGAGGGGAAAATGCGGCCTGGACCGTCTCCAGAGTAAATGTGTGCACATCACCTCATGGAAGTGCCTTATGGACCCATTTTTATCTAATAACTGAACAAAAGATCATTCATATCATATAGAGTACATACATTGTGCCACAACTGATGAAGGAGCAGAAActagcacacaaacacacactctcttcatgGTGGTGTTGACACCTTGATGCCTAGTCCGATCTCCACCTGCACTATAGTAGTGGTGGAGTCTGTGTTCTCCACCACATATACTCTGCAGAGACACTGGAATGTTTATCTGATGCTTCCTGCATGTCAAAATGGCATAGTAGCATTGGTAAGAATGATGAAGAATTTAATAATGCACATGTAATAGAGCTGTCCTGATCCATGATGTATGTGTTATGCATCTCTGATTTCTGTGATTTGGGCTCCAGGAAATTCTGTTAGGACACACCATGTCATCTTTATAGTATCACTTATAGTATACATTCTAGCTGTGGCTTTTGTATTTGCTTCTACTTTACAGTAACTAGCTATCTGCCTTTCACCATACAATCTCTTCTACAACTTGCCTTTGATGGTGTAATGTTGGGTCAATTTTGCTGCTAGATGTAATTCAGCCTTATAAATCTGTCCTATGTTTTAAATTTCATGGCTAAGTACACACCAAATGTTGCCTACTGGCTAATGAATTGCAGCAAAAAGGAAGAGGAACAATACAATAATCTACGATCTATAATCTTACATGAGGAAATGGCAAATCCAGTCCTAATGACATTTGAAAGCCAAGTTCCCTCTCTATCAACTCATGCTATCAGATTCCATTCATTCACTCTGTCAGTTCTCACATAGCTCTCACTGAACTACGTTTATGTTTATATGCACTAAAATTCAGGATCTGTCTAGTTTCATTTCTCTCCGAACGCACAAAGTGTTTCAGAAGGTATCGGAtactgtctctctcagtctgtctcccCAGACCTGTCTCACCTCAAGCTGCTTAAAGTGTTATGATCCCAGGGATAGCTGCTTGGCCCCAGAGTTGGGTAGCCTCTCTGCTTTTGAAGCTGGCTGCCTACATTCGCCCGCCTGGGGTTGTTATCCACTCTCCCTAGAAATATATCAATAATAGATGTTTTACTCGCACTGAGATGTgcctcagagagagagggggccTTGACCTCTAGTGGACCCAGCTGTCTGCGTGCTGTCTGATgtactctgtgtttgtgtttaaaaaaaaaaaaaaaaaaaaaaaggaaattccTT

Function

symbol description
pard6a Predicted to enable protein kinase C binding activity. Acts upstream of or within neural tube formation. Located in apical plasma membrane. Orthologous to human PARD6A (par-6 family cell polarity regulator alpha).

NR:

description
partitioning defective 6 homolog alpha

GO: NA

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927748.2 True 2765 mRNA 0.47 3 15177211 15200248

Neighbor

gene id symbol gene type direction distance location
tsnaxip1 tsnaxip1 coding downstream 45005 15121047 ~ 15132206 (-)
nutf2 nutf2 coding downstream 57493 15105315 ~ 15119718 (-)
edc4 edc4,LOC107733561,LOC107726309 coding downstream 72101 15075874 ~ 15105110 (-)
nrn1la nrn1l coding downstream 104716 15043298 ~ 15072495 (-)
pskh1 pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554 coding downstream 150343 15018958 ~ 15026868 (-)
LOC113534617 LOC108264368 coding upstream 271381 15471629 ~ 15473015 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding upstream 285765 15486013 ~ 15499252 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding upstream 874699 16074947 ~ 16083613 (-)
LOC113534689 NA coding upstream 1381114 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 1480674 16680922 ~ 16741071 (-)
G99784 NA non-coding downstream 3777 15171311 ~ 15173434 (-)
G99775 NA non-coding downstream 8785 15160203 ~ 15168426 (-)
G99780 NA non-coding downstream 26896 15149403 ~ 15150315 (-)
G99493 NA non-coding downstream 528218 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 573739 14601223 ~ 14603472 (-)
G99915 ctcf non-coding upstream 97357 15297605 ~ 15299578 (-)
G99941 NA non-coding upstream 117261 15317509 ~ 15317867 (-)
LOC113534479 NA non-coding upstream 233147 15433395 ~ 15436916 (-)
G100023 NA non-coding upstream 277253 15477501 ~ 15478166 (-)
G100027 NA non-coding upstream 282581 15482829 ~ 15483037 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 830203 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1614637 13550680 ~ 13562574 (-)
G98770 NA other downstream 2124900 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2753233 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2771930 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 146918 15347166 ~ 15357563 (-)
G101178 NA other upstream 2987199 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4779821 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5195618 20395866 ~ 20416574 (-)
G102566 NA other upstream 5753354 20953602 ~ 20966910 (-)

Expression


Co-expression Network