tbc1d15 (tbc1d15,LOC107672302,LOC107686258,LOC107749074)


Basic Information

Item Value
gene id tbc1d15
gene name tbc1d15,LOC107672302,LOC107686258,LOC107749074
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12466146 ~ 12476898 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927754.2
gtctgcgcatgcgcagtccGGGCCACGCGGAAGATGACTTGTCAGTGTTGTTGTGGAAAGCTGACAGGCACGTGAGCTGTGCGACGTCGAGTAGCGATAGCAGGCGACATGGCGGCCACAACTCCTCCCAAGGTAATATTTGAACACGAAGGGGTTTTTATCCATTCAAACACAGAAGAATCAGAGGATCAGGATTCACTAATATCAGGGTTCCTTCGGATCGTCGATAAGgaTGGTGAAACATTTGtggaatataaacctgtggagGATACAGTGGATCTTTCAAATATGCTTTGTGCCTGCAAGGACTCCAGCTCAGTGGTGGAGTGGACACAGAGGCCTCATCGTCCTTTGGACCAGCAGCTAAGCTATGAGACTGAGTGGGACATGGTTAACACAGTCTCCTTTAAGAGGAAGATCCATACTAATGGCGAAGGGGGTTCAAACCACTTTAATGAGCGCAACAAGTGGGCCTTCTCCTTTAATGTCAGTGAACTCAGAACTGTCACAGTTAAAGACGAAGGCTGGTCATACCTAATTTTCTGCTTGAGAGATGATGCAAAATTGCCTGCCATTCACTTCCATCAAGGAGGCAGCCAAGGGTTCCTGGATGGCTTGAGGAAATCAGTTCATCTCAGCGAGAGTCCTGATGACAAAAACATTCTGGTAGTTGCCACATATAACAAAGCAATTTCACAGTCCTTTGAGAATCTTCTAGATGACTCCAATTATGGCCTTGTTCAGAAGTTCAGAAAGGATCCCTACACAACAACTTTTGGTGGTTTCTCTAAAGTCACAAACTACATCTTTGATGCGTTTCGGCCGTCCGAGTCTGAATGCCAGCAGCGCCCTGCTGAGGAAGTGGCAGACATTCTGGGGGAACTGATCCCAGGCCTGGAGATCAACCAGCAGGAGGAGCCTGGCTTTGAGGTCATCACCAGAGTTGACTTGGGCACAAGGCCAGATGTGCAGAGGAGAGAGCCAGTAATGTTGGTGGACTGGACAAAGCACTCAGACTCAGAGGGAAGAGTGTCCAATGTGCCTCACTTAAAGCACCTTATTTTCAAAGGgGGTCTGTGCCATGctgtgagaaaagaagcttgGAAATTTTTGCTGGGCTATTATCCCTGGGACAGTACAcatgaagaaaggaaaaatctGCAGAAAAGGAAAACGGACGAGTACTTCAGAATGAAGCTGCAGTGGAAATCAGTCAGCGAGGAGCAGGAAAAGAGAAATTCCAGGTTACGGGATTATAAAAGCCTTATCGaGAAAGATGTAAACAGGACTGACCGCAACAACAAGTTCTACGAGGGCCTGGACAACCCTGGACTGATATTGCTGCATGACATCCTTATGACGTATTGCATGTATGACTTTGATTTGGGCTATGTACAAGGCATGAGTGATCTGCTCTCTCCCATCCTCTATGTTATGGAGAATGAAGTGGATGCGTTCTGGTGCTTTGTCTCCTTCATGGATCAGATGCATGAGAACTTTGAAGAGCAGATGCAGGGCATGAAGACTCAGCTGATCCAGCTTAGCACATTGCTACGGCTCCTAGACTTAGCCTTCTGGAACTACCTGGAGGCTCAGGATTCTGGgtatctgtatttctgttttcGGTGGTTACTGATCCGCTTCAAGAGGGAACTCTACTTTCAGGATGTGCTTCGCCTCTGGGAGGTGATGTGGACAGGCCTGCCTTGCCAGAATTTTCACCTTCTGGTATGCTGTGCCATTTTGGattcagaaaaacagaaaataatggaCAGACATTATGGATTTAATGAAATTCTTAAGCACATAAATGAACTCTCCTTGAAACTGGACATTGAGGAAATCCTTATTAAATCAGAGGCTATATATATGCAGTTAAAGAATTGCAAGGATTTGCCCCATTCAGTGAGTGAGATTCTGGGCTTGAATGCAGTTGCAGGGAGCTCTACATTAGAAACCAGTGAATACAGCGTGCTTGAATCACCTCAGACCTCACCAAGATCTGCACACAGGCAAGACGAGGCCTACTCCAACGGCCATGGACTCTTACAAGAAACGTCACACAACACATGTAAAGTCGGCTTTATTTCATAGGACATTTCATAGGTTTTATTAATGCCTGTATATCAGTAAGATAAACAGTGTTTGGTATCATGTAGATATTTGCTACCAGATGTGACATTGTAAAGTATCCCAGATAAAACCATAGAAAAGagtatgtatgaatgtaaaatTGGGATCAAATGTGATCCTAAAgctattatttttgtaattttcttgTACCATATTGTCTTTCATTGAAATAATCATTCCTTCTCACTGTATAAAGTTTTCAAAATGTAAAGATGGAATTTCCATTGTTGATTTTAAATGCTGATTTATTTCCCCCATTTTTCTGAATCATGCAGTTGAACCAATTAAAATCTGGTCTCTTCCTGGTG

Function

symbol description
tbc1d15 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in polster. Orthologous to human TBC1D15 (TBC1 domain family member 15).

NR:

description
PREDICTED: TBC1 domain family member 15

GO:      GO:0005097,GO:0032313

KEGG:

id description
K20168 TBC1D15; TBC1 domain family member 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927754.2 True 2441 mRNA 0.44 17 12466146 12476898

Neighbor

gene id symbol gene type direction distance location
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding downstream 2905 12458515 ~ 12463241 (-)
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding downstream 70484 12388873 ~ 12395662 (-)
swap70b swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307 coding downstream 80793 12363559 ~ 12385353 (-)
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding downstream 162449 12282297 ~ 12303697 (-)
LOC113534448 NA coding downstream 197029 12267333 ~ 12269117 (-)
has3 has3,LOC107740342,LOC107672271,LOC107707223 coding upstream 5333 12482231 ~ 12489322 (-)
tango6 tango6 coding upstream 14497 12491395 ~ 12518992 (-)
il17c il17c coding upstream 42647 12519545 ~ 12522723 (-)
zc3h18 zc3h18,LOC106573693 coding upstream 47361 12524259 ~ 12552261 (-)
zfpm1 zfpm1 coding upstream 130975 12607873 ~ 12680438 (-)
G98343 NA non-coding downstream 189917 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 190735 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 769481 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 773067 11690997 ~ 11693079 (-)
G97831 NA non-coding downstream 989032 11396116 ~ 11477114 (-)
G98383 NA non-coding upstream 1005 12477903 ~ 12478277 (-)
G98551 NA non-coding upstream 235196 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 251546 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 262051 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 287001 12763899 ~ 12774207 (-)
akip1 LOC108264820 other downstream 42168 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 60865 12396507 ~ 12405281 (-)
admb NA other downstream 120694 12311822 ~ 12345452 (-)
sspn sspn other downstream 587942 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 696160 11752525 ~ 11769986 (-)
G98770 NA other upstream 568925 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1073782 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1859038 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2870268 15347166 ~ 15357563 (-)
G101178 NA other upstream 5710549 18187447 ~ 18196806 (-)

Expression


Co-expression Network